RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 FAM161AQ3B820 660 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 ANTXR1Q9H6X2 564 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 SHPRHQ149N8 1683 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 MCM4P33991 863 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 GABPB1Q06547 395 aaPredicted RBP11.62□□□□□ -0.55
PTCH1-220ENST00000550136 CEP83Q9Y592 693 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 MTUS2Q5JR59 1369 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 TMEM2Q9UHN6 1383 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 TRAK2O60296 914 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 SIRT1Q96EB6 747 aa11.62□□□□□ -0.55
PTCH1-220ENST00000550136 EIF2AK4Q9P2K8 1649 aaKnown RBP11.62□□□□□ -0.55
PTCH1-220ENST00000550136 PITPNM1O00562 1244 aa11.61□□□□□ -0.55
PTCH1-220ENST00000550136 VIRMAQ69YN4 1812 aaKnown RBP11.61□□□□□ -0.55
PTCH1-220ENST00000550136 TET3O43151 1660 aa11.61□□□□□ -0.55
PTCH1-220ENST00000550136 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.61□□□□□ -0.55
PTCH1-220ENST00000550136 BRPF1P55201 1214 aaPredicted RBP11.61□□□□□ -0.55
PTCH1-220ENST00000550136 SEMA3FQ13275 785 aa11.61□□□□□ -0.55
PTCH1-220ENST00000550136 NBPF11Q86T75 865 aa11.61□□□□□ -0.55
PTCH1-220ENST00000550136 ARHGEF5Q12774 1597 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 KDM5AP29375 1690 aaKnown RBP11.6□□□□□ -0.55
PTCH1-220ENST00000550136 CT47A1Q5JQC4 288 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-220ENST00000550136 MROH1Q8NDA8 1641 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 AHDC1Q5TGY3 1603 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-220ENST00000550136 C8orf34Q49A92 452 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 FAM9BQ8IZU0 186 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 ZNF710Q8N1W2 664 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 MYRIPQ8NFW9 859 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 EXOC6Q8TAG9 804 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 CALCOCO1Q9P1Z2 691 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 ARHGAP31Q2M1Z3 1444 aa11.6□□□□□ -0.55
PTCH1-220ENST00000550136 EHBP1L1Q8N3D4 1523 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 PIP4P2Q8N4L2 257 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 NCAPGQ9BPX3 1015 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 HIRIP3Q9BW71 556 aaPredicted RBP11.59□□□□□ -0.55
PTCH1-220ENST00000550136 RAI14Q9P0K7 980 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 NOL7Q9UMY1 257 aaKnown RBP11.59□□□□□ -0.55
PTCH1-220ENST00000550136 CCDC184Q52MB2 194 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 SMC4Q9NTJ3 1288 aa11.59□□□□□ -0.55
PTCH1-220ENST00000550136 PIK3C2BO00750 1634 aa11.58□□□□□ -0.56
PTCH1-220ENST00000550136 CEP152O94986 1710 aa11.58□□□□□ -0.56
PTCH1-220ENST00000550136 CCDC172P0C7W6 258 aa11.58□□□□□ -0.56
PTCH1-220ENST00000550136 MFAP1P55081 439 aaKnown RBP11.58□□□□□ -0.56
PTCH1-220ENST00000550136 MAP2K1Q02750 393 aaPredicted RBP11.58□□□□□ -0.56
PTCH1-220ENST00000550136 PRDM16Q9HAZ2 1276 aa11.58□□□□□ -0.56
PTCH1-220ENST00000550136 TTC36A6NLP5 189 aa11.57□□□□□ -0.56
PTCH1-220ENST00000550136 GOLIM4O00461 696 aa11.57□□□□□ -0.56
PTCH1-220ENST00000550136 MCM5P33992 734 aa11.57□□□□□ -0.56
PTCH1-220ENST00000550136 GTF2F1P35269 517 aaKnown RBP eCLIP11.57□□□□□ -0.56
PTCH1-220ENST00000550136 RRP1P56182 461 aaKnown RBP11.57□□□□□ -0.56
PTCH1-220ENST00000550136 RBM33Q96EV2 1170 aaKnown RBP11.57□□□□□ -0.56
PTCH1-220ENST00000550136 MAST1Q9Y2H9 1570 aa11.57□□□□□ -0.56
PTCH1-220ENST00000550136 XPCQ01831 940 aaPredicted RBP11.56□□□□□ -0.56
PTCH1-220ENST00000550136 EFCAB6Q5THR3 1501 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 RGS12O14924 1447 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 NCOA3Q9Y6Q9 1424 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 TSPY4P0CV99 314 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 TSPY10P0CW01 314 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 GPATCH11Q8N954 259 aa11.56□□□□□ -0.56
PTCH1-220ENST00000550136 SLKQ9H2G2 1235 aaPredicted RBP11.56□□□□□ -0.56
PTCH1-220ENST00000550136 FEZ2Q9UHY8 353 aaPredicted RBP11.56□□□□□ -0.56
PTCH1-220ENST00000550136 KTN1Q86UP2 1357 aaKnown RBP11.55□□□□□ -0.56
PTCH1-220ENST00000550136 NBPF9Q3BBW0 867 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 FEZ1Q99689 392 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 CFAP65Q6ZU64 1925 aaKnown RBP11.55□□□□□ -0.56
PTCH1-220ENST00000550136 GTF2A1P52655 376 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-220ENST00000550136 CTR9Q6PD62 1173 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 SLC26A8Q96RN1 970 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 MRS2Q9HD23 443 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 VPS8Q8N3P4 1428 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 DIP2AQ14689 1571 aa11.55□□□□□ -0.56
PTCH1-220ENST00000550136 ANAPC15P60006 121 aa11.54□□□□□ -0.56
PTCH1-220ENST00000550136 RNF217Q8TC41 542 aa11.54□□□□□ -0.56
PTCH1-220ENST00000550136 PANK3Q9H999 370 aa11.54□□□□□ -0.56
PTCH1-220ENST00000550136 AFF2P51816 1311 aa11.54□□□□□ -0.56
PTCH1-220ENST00000550136 DDX11L8A8MPP1 907 aa11.54□□□□□ -0.56
PTCH1-220ENST00000550136 NOP2P46087 812 aaKnown RBP11.54□□□□□ -0.56
PTCH1-220ENST00000550136 RBM6P78332 1123 aaKnown RBP11.54□□□□□ -0.56
PTCH1-220ENST00000550136 SPDYE4A6NLX3 237 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 SLFN14P0C7P3 912 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 TNNT3P45378 269 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-220ENST00000550136 FXR2P51116 673 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTCH1-220ENST00000550136 MPNDQ8N594 471 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 PRIMPOLQ96LW4 560 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 KIF16BQ96L93 1317 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 ATAD2Q6PL18 1390 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 MKRN4PQ13434 485 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-220ENST00000550136 BRMS1Q9HCU9 246 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.53□□□□□ -0.56
PTCH1-220ENST00000550136 STAG3Q9UJ98 1225 aa11.53□□□□□ -0.56
PTCH1-220ENST00000550136 SETBP1Q9Y6X0 1596 aa11.52□□□□□ -0.57
PTCH1-220ENST00000550136 GAS2L3Q86XJ1 694 aa11.52□□□□□ -0.57
PTCH1-220ENST00000550136 CHD2O14647 1828 aaKnown RBP11.52□□□□□ -0.57
PTCH1-220ENST00000550136 HMGN5P82970 282 aaKnown RBP11.52□□□□□ -0.57
PTCH1-220ENST00000550136 OGFRQ9NZT2 677 aa11.52□□□□□ -0.57
PTCH1-220ENST00000550136 STK26Q9P289 416 aa11.52□□□□□ -0.57
PTCH1-220ENST00000550136 NASPP49321 788 aaPredicted RBP11.51□□□□□ -0.57
PTCH1-220ENST00000550136 NBPF10Q6P3W6 841 aaKnown RBP11.51□□□□□ -0.57
PTCH1-220ENST00000550136 PDCL2Q8N4E4 241 aa11.51□□□□□ -0.57
PTCH1-220ENST00000550136 ZKSCAN5Q9Y2L8 839 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms