RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 PREX1Q8TCU6 1659 aa18.23■□□□□ 0.51
HOXC11-202ENST00000546378 TMPOP42166 694 aaKnown RBP18.23■□□□□ 0.51
HOXC11-202ENST00000546378 THEMISQ8N1K5 641 aaPredicted RBP18.23■□□□□ 0.51
HOXC11-202ENST00000546378 DDX19BQ9UMR2 479 aa18.23■□□□□ 0.51
HOXC11-202ENST00000546378 NEXMIFQ5QGS0 1516 aa18.22■□□□□ 0.51
HOXC11-202ENST00000546378 GOLGA6L22H0YM25 854 aa18.22■□□□□ 0.51
HOXC11-202ENST00000546378 GAS2L2Q8NHY3 880 aa18.22■□□□□ 0.51
HOXC11-202ENST00000546378 MIS18AQ9NYP9 233 aa18.22■□□□□ 0.51
HOXC11-202ENST00000546378 NASPP49321 788 aaPredicted RBP18.22■□□□□ 0.51
HOXC11-202ENST00000546378 XPCQ01831 940 aaPredicted RBP18.22■□□□□ 0.51
HOXC11-202ENST00000546378 PRPF40AO75400 957 aaKnown RBP18.21■□□□□ 0.51
HOXC11-202ENST00000546378 KIAA1211Q6ZU35 1233 aa18.21■□□□□ 0.51
HOXC11-202ENST00000546378 OTUD7AQ8TE49 926 aaPredicted RBP18.21■□□□□ 0.51
HOXC11-202ENST00000546378 CHD1LQ86WJ1 897 aa18.2■□□□□ 0.5
HOXC11-202ENST00000546378 TAOK2Q9UL54 1235 aa18.2■□□□□ 0.5
HOXC11-202ENST00000546378 DDX11L8A8MPP1 907 aa18.2■□□□□ 0.5
HOXC11-202ENST00000546378 GDPD2Q9HCC8 539 aa18.2■□□□□ 0.5
HOXC11-202ENST00000546378 NRXN1Q9ULB1 1477 aa18.19■□□□□ 0.5
HOXC11-202ENST00000546378 TMEM2Q9UHN6 1383 aa18.19■□□□□ 0.5
HOXC11-202ENST00000546378 FAM177BA6PVY3 158 aa18.19■□□□□ 0.5
HOXC11-202ENST00000546378 HDGFL2Q7Z4V5 671 aaPredicted RBP18.19■□□□□ 0.5
HOXC11-202ENST00000546378 PRDM10Q9NQV6 1147 aa18.19■□□□□ 0.5
HOXC11-202ENST00000546378 ASXL1Q8IXJ9 1541 aa18.19■□□□□ 0.5
HOXC11-202ENST00000546378 TERF2IPQ9NYB0 399 aa18.18■□□□□ 0.5
HOXC11-202ENST00000546378 ZRANB1Q9UGI0 708 aa18.18■□□□□ 0.5
HOXC11-202ENST00000546378 TBC1D9Q6ZT07 1266 aa18.18■□□□□ 0.5
HOXC11-202ENST00000546378 C14orf37Q86TY3 774 aa18.17■□□□□ 0.5
HOXC11-202ENST00000546378 AMOTL2Q9Y2J4 779 aa18.17■□□□□ 0.5
HOXC11-202ENST00000546378 MYO5BQ9ULV0 1848 aa18.17■□□□□ 0.5
HOXC11-202ENST00000546378 CALD1Q05682 793 aaKnown RBP18.17■□□□□ 0.5
HOXC11-202ENST00000546378 RRS1Q15050 365 aaKnown RBP18.17■□□□□ 0.5
HOXC11-202ENST00000546378 CHMP3Q9Y3E7 222 aa18.16■□□□□ 0.5
HOXC11-202ENST00000546378 ZGPATQ8N5A5 531 aaKnown RBP18.16■□□□□ 0.5
HOXC11-202ENST00000546378 ZC3H13Q5T200 1668 aaKnown RBP18.16■□□□□ 0.5
HOXC11-202ENST00000546378 TMEM131LA2VDJ0 1609 aa18.16■□□□□ 0.5
HOXC11-202ENST00000546378 DIAPH1O60610 1272 aaKnown RBP18.15■□□□□ 0.5
HOXC11-202ENST00000546378 ADGRB1O14514 1584 aa18.15■□□□□ 0.5
HOXC11-202ENST00000546378 IPO8O15397 1037 aaKnown RBP18.15■□□□□ 0.5
HOXC11-202ENST00000546378 PHACTR3Q96KR7 559 aa18.15■□□□□ 0.5
HOXC11-202ENST00000546378 INSRP06213 1382 aa18.14■□□□□ 0.5
HOXC11-202ENST00000546378 PPLO60437 1756 aa18.14■□□□□ 0.5
HOXC11-202ENST00000546378 JARID2Q92833 1246 aaPredicted RBP18.14■□□□□ 0.49
HOXC11-202ENST00000546378 TSC1Q92574 1164 aa18.14■□□□□ 0.49
HOXC11-202ENST00000546378 IQGAP1P46940 1657 aa18.14■□□□□ 0.49
HOXC11-202ENST00000546378 WDR63Q8IWG1 891 aa18.13■□□□□ 0.49
HOXC11-202ENST00000546378 NUDT16Q96DE0 195 aaKnown RBP18.13■□□□□ 0.49
HOXC11-202ENST00000546378 EMILIN1Q9Y6C2 1016 aa18.13■□□□□ 0.49
HOXC11-202ENST00000546378 POLR1AO95602 1720 aaPredicted RBP18.13■□□□□ 0.49
HOXC11-202ENST00000546378 WASLO00401 505 aaPredicted RBP18.13■□□□□ 0.49
HOXC11-202ENST00000546378 MAP4K4O95819 1239 aaPredicted RBP18.13■□□□□ 0.49
HOXC11-202ENST00000546378 RILPL2Q969X0 211 aa18.13■□□□□ 0.49
HOXC11-202ENST00000546378 ZFYVE9O95405 1425 aa18.12■□□□□ 0.49
HOXC11-202ENST00000546378 LAMC1P11047 1609 aa18.12■□□□□ 0.49
HOXC11-202ENST00000546378 DDX54Q8TDD1 881 aaKnown RBP18.12■□□□□ 0.49
HOXC11-202ENST00000546378 ZNF830Q96NB3 372 aaPredicted RBP18.12■□□□□ 0.49
HOXC11-202ENST00000546378 TRIM6-TRIM34B2RNG4 842 aa18.11■□□□□ 0.49
HOXC11-202ENST00000546378 TRIM35Q9UPQ4 493 aa18.11■□□□□ 0.49
HOXC11-202ENST00000546378 REREQ9P2R6 1566 aa18.11■□□□□ 0.49
HOXC11-202ENST00000546378 SYCE3A1L190 88 aa18.11■□□□□ 0.49
HOXC11-202ENST00000546378 K7ELQ4 463 aaPredicted RBP18.11■□□□□ 0.49
HOXC11-202ENST00000546378 CLCN1P35523 988 aa18.11■□□□□ 0.49
HOXC11-202ENST00000546378 ALKQ9UM73 1620 aa18.1■□□□□ 0.49
HOXC11-202ENST00000546378 SPATA31D1Q6ZQQ2 1576 aa18.1■□□□□ 0.49
HOXC11-202ENST00000546378 SBNO2Q9Y2G9 1366 aa18.1■□□□□ 0.49
HOXC11-202ENST00000546378 ANKLE2Q86XL3 938 aa18.1■□□□□ 0.49
HOXC11-202ENST00000546378 A0A1W2PP64 1363 aa18.09■□□□□ 0.49
HOXC11-202ENST00000546378 UPF3BQ9BZI7 483 aaKnown RBP18.09■□□□□ 0.49
HOXC11-202ENST00000546378 F6X3S4 739 aa18.08■□□□□ 0.49
HOXC11-202ENST00000546378 NEURL4Q96JN8 1562 aa18.08■□□□□ 0.48
HOXC11-202ENST00000546378 FYB1O15117 783 aa18.08■□□□□ 0.48
HOXC11-202ENST00000546378 KCNA6P17658 529 aa18.08■□□□□ 0.48
HOXC11-202ENST00000546378 NME9Q86XW9 330 aa18.08■□□□□ 0.48
HOXC11-202ENST00000546378 ZBTB40Q9NUA8 1239 aa18.08■□□□□ 0.48
HOXC11-202ENST00000546378 CCDC61Q9Y6R9 512 aa18.07■□□□□ 0.48
HOXC11-202ENST00000546378 ROBO2Q9HCK4 1378 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 FSD2A1L4K1 749 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 BAG4O95429 457 aaKnown RBP18.06■□□□□ 0.48
HOXC11-202ENST00000546378 NUTM2GQ5VZR2 741 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 MCM10Q7L590 875 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 C17orf53Q8N3J3 647 aaPredicted RBP18.06■□□□□ 0.48
HOXC11-202ENST00000546378 C8orf58Q8NAV2 365 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 NGDNQ8NEJ9 315 aaKnown RBP18.06■□□□□ 0.48
HOXC11-202ENST00000546378 IFT172Q9UG01 1749 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 ABCC11Q96J66 1382 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 PRIM1P49642 420 aaKnown RBP18.06■□□□□ 0.48
HOXC11-202ENST00000546378 NEK4P51957 841 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 TWISTNBQ3B726 338 aaPredicted RBP18.06■□□□□ 0.48
HOXC11-202ENST00000546378 EXOC6BQ9Y2D4 811 aa18.06■□□□□ 0.48
HOXC11-202ENST00000546378 HSPA2P54652 639 aa18.05■□□□□ 0.48
HOXC11-202ENST00000546378 CCDC27Q2M243 656 aa18.05■□□□□ 0.48
HOXC11-202ENST00000546378 SETBP1Q9Y6X0 1596 aa18.05■□□□□ 0.48
HOXC11-202ENST00000546378 NUCB1Q02818 461 aa18.05■□□□□ 0.48
HOXC11-202ENST00000546378 PTPRMP28827 1452 aa18.05■□□□□ 0.48
HOXC11-202ENST00000546378 KDM5AP29375 1690 aaKnown RBP18.04■□□□□ 0.48
HOXC11-202ENST00000546378 ANKRD36BQ8N2N9 1353 aa18.04■□□□□ 0.48
HOXC11-202ENST00000546378 KIAA1210Q9ULL0 1709 aa18.04■□□□□ 0.48
HOXC11-202ENST00000546378 LTV1Q96GA3 475 aaPredicted RBP18.03■□□□□ 0.48
HOXC11-202ENST00000546378 TULP4Q9NRJ4 1543 aa18.03■□□□□ 0.48
HOXC11-202ENST00000546378 ANO2Q9NQ90 1003 aa18.03■□□□□ 0.48
HOXC11-202ENST00000546378 NSFL1CQ9UNZ2 370 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms