RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 SAMD1Q6SPF0 538 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-218ENST00000545889 CCDC34Q96HJ3 373 aa10.63□□□□□ -0.71
CLIP1-218ENST00000545889 A2ML1A8K2U0 1454 aa10.63□□□□□ -0.71
CLIP1-218ENST00000545889 CLTCQ00610 1675 aaKnown RBP10.62□□□□□ -0.71
CLIP1-218ENST00000545889 SPHKAPQ2M3C7 1700 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 CCAR1Q8IX12 1150 aaKnown RBP10.62□□□□□ -0.71
CLIP1-218ENST00000545889 C19orf44Q9H6X5 657 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 DDX17Q92841 729 aaKnown RBP10.62□□□□□ -0.71
CLIP1-218ENST00000545889 FRMPD1Q5SYB0 1578 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 CNKSR2Q8WXI2 1034 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 RBM42Q9BTD8 480 aaKnown RBP10.62□□□□□ -0.71
CLIP1-218ENST00000545889 A0A1W2PP64 1363 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 PIK3C2GO75747 1445 aa10.62□□□□□ -0.71
CLIP1-218ENST00000545889 ABCC11Q96J66 1382 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 TTC21BQ7Z4L5 1316 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 RWDD1Q9H446 243 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-218ENST00000545889 ANKRD36BQ8N2N9 1353 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 CHAF1AQ13111 956 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-218ENST00000545889 TOM1L2Q6ZVM7 507 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 ARHGEF40Q8TER5 1519 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 HSP90B1P14625 803 aaKnown RBP10.61□□□□□ -0.71
CLIP1-218ENST00000545889 USHBP1Q8N6Y0 703 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 CABLES1Q8TDN4 633 aa10.61□□□□□ -0.71
CLIP1-218ENST00000545889 GZF1Q9H116 711 aaPredicted RBP10.61□□□□□ -0.71
CLIP1-218ENST00000545889 MSH6P52701 1360 aa10.6□□□□□ -0.71
CLIP1-218ENST00000545889 FAM177BA6PVY3 158 aa10.6□□□□□ -0.71
CLIP1-218ENST00000545889 NECTIN2Q92692 538 aa10.6□□□□□ -0.71
CLIP1-218ENST00000545889 DHX16O60231 1041 aaKnown RBP10.6□□□□□ -0.71
CLIP1-218ENST00000545889 LRRFIP1Q32MZ4 808 aaKnown RBP10.6□□□□□ -0.71
CLIP1-218ENST00000545889 L1TD1Q5T7N2 865 aaKnown RBP10.6□□□□□ -0.71
CLIP1-218ENST00000545889 ROBO2Q9HCK4 1378 aa10.6□□□□□ -0.71
CLIP1-218ENST00000545889 HSCBQ8IWL3 235 aa10.6□□□□□ -0.71
CLIP1-218ENST00000545889 NLRP1Q9C000 1473 aa10.59□□□□□ -0.71
CLIP1-218ENST00000545889 CAMSAP1Q5T5Y3 1602 aa10.59□□□□□ -0.71
CLIP1-218ENST00000545889 DNTTIP2Q5QJE6 756 aaKnown RBP10.59□□□□□ -0.71
CLIP1-218ENST00000545889 PLEKHG1Q9ULL1 1385 aa10.59□□□□□ -0.71
CLIP1-218ENST00000545889 MYOM2P54296 1465 aa10.59□□□□□ -0.71
CLIP1-218ENST00000545889 CHRNA2Q15822 529 aa10.59□□□□□ -0.71
CLIP1-218ENST00000545889 LMTK2Q8IWU2 1503 aa10.58□□□□□ -0.72
CLIP1-218ENST00000545889 E9PSI1 815 aa10.58□□□□□ -0.72
CLIP1-218ENST00000545889 HMGB2P26583 209 aaKnown RBP10.58□□□□□ -0.72
CLIP1-218ENST00000545889 HSP90AB2PQ58FF8 381 aa10.58□□□□□ -0.72
CLIP1-218ENST00000545889 AGLP35573 1532 aa10.58□□□□□ -0.72
CLIP1-218ENST00000545889 DDX54Q8TDD1 881 aaKnown RBP10.58□□□□□ -0.72
CLIP1-218ENST00000545889 THUMPD2Q9BTF0 503 aaKnown RBP10.58□□□□□ -0.72
CLIP1-218ENST00000545889 ADAMTS2O95450 1211 aa10.58□□□□□ -0.72
CLIP1-218ENST00000545889 AKAP17AQ02040 695 aaKnown RBP10.58□□□□□ -0.72
CLIP1-218ENST00000545889 RICTORQ6R327 1708 aa10.57□□□□□ -0.72
CLIP1-218ENST00000545889 HTATSF1O43719 755 aaKnown RBP10.57□□□□□ -0.72
CLIP1-218ENST00000545889 TSR2Q969E8 191 aaKnown RBP10.57□□□□□ -0.72
CLIP1-218ENST00000545889 NGLY1Q96IV0 654 aa10.57□□□□□ -0.72
CLIP1-218ENST00000545889 APPP05067 770 aa10.57□□□□□ -0.72
CLIP1-218ENST00000545889 KIAA2012Q0VF49 1180 aa10.57□□□□□ -0.72
CLIP1-218ENST00000545889 BBXQ8WY36 941 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-218ENST00000545889 ZMYM4Q5VZL5 1548 aa10.57□□□□□ -0.72
CLIP1-218ENST00000545889 NPHP4O75161 1426 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-218ENST00000545889 UBAP1LF5GYI3 381 aa10.56□□□□□ -0.72
CLIP1-218ENST00000545889 PDE4AP27815 886 aa10.56□□□□□ -0.72
CLIP1-218ENST00000545889 DCTN1Q14203 1278 aa10.56□□□□□ -0.72
CLIP1-218ENST00000545889 NINLQ9Y2I6 1382 aa10.56□□□□□ -0.72
CLIP1-218ENST00000545889 TATP17735 454 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-218ENST00000545889 AIMP1Q12904 312 aaKnown RBP10.56□□□□□ -0.72
CLIP1-218ENST00000545889 SYNE3Q6ZMZ3 975 aa10.56□□□□□ -0.72
CLIP1-218ENST00000545889 ASXL1Q8IXJ9 1541 aa10.55□□□□□ -0.72
CLIP1-218ENST00000545889 KCNH5Q8NCM2 988 aa10.55□□□□□ -0.72
CLIP1-218ENST00000545889 POLKQ9UBT6 870 aa10.55□□□□□ -0.72
CLIP1-218ENST00000545889 AAMPQ13685 434 aa10.55□□□□□ -0.72
CLIP1-218ENST00000545889 ZNF335Q9H4Z2 1342 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-218ENST00000545889 FKBP5Q13451 457 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-218ENST00000545889 RIC3Q7Z5B4 369 aa10.55□□□□□ -0.72
CLIP1-218ENST00000545889 PUS7Q96PZ0 661 aaKnown RBP10.55□□□□□ -0.72
CLIP1-218ENST00000545889 FAM13BQ9NYF5 915 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 ADGRB3O60242 1522 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 PARD3Q8TEW0 1356 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 KIF3AQ9Y496 699 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 TMEM94Q12767 1356 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 TSPYL4Q9UJ04 414 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 PRR36Q9H6K5 1346 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 WWC1Q8IX03 1113 aa10.54□□□□□ -0.72
CLIP1-218ENST00000545889 CPLX2Q6PUV4 134 aaKnown RBP10.53□□□□□ -0.72
CLIP1-218ENST00000545889 NPHP3Q7Z494 1330 aa10.53□□□□□ -0.72
CLIP1-218ENST00000545889 TMPOP42166 694 aaKnown RBP10.53□□□□□ -0.72
CLIP1-218ENST00000545889 ZNF530Q6P9A1 599 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-218ENST00000545889 FCHSD2O94868 740 aa10.53□□□□□ -0.72
CLIP1-218ENST00000545889 PLEKHO1Q53GL0 409 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-218ENST00000545889 SLKQ9H2G2 1235 aaPredicted RBP10.53□□□□□ -0.72
CLIP1-218ENST00000545889 AEBP1Q8IUX7 1158 aa10.52□□□□□ -0.72
CLIP1-218ENST00000545889 MIS18AQ9NYP9 233 aa10.52□□□□□ -0.72
CLIP1-218ENST00000545889 EXOSC9Q06265 439 aaKnown RBP10.52□□□□□ -0.73
CLIP1-218ENST00000545889 G3BP1Q13283 466 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLIP1-218ENST00000545889 MCM10Q7L590 875 aa10.52□□□□□ -0.73
CLIP1-218ENST00000545889 CEP89Q96ST8 783 aa10.52□□□□□ -0.73
CLIP1-218ENST00000545889 CCDC43Q96MW1 224 aaKnown RBP10.52□□□□□ -0.73
CLIP1-218ENST00000545889 LMTK3Q96Q04 1460 aa10.52□□□□□ -0.73
CLIP1-218ENST00000545889 ZFYVE9O95405 1425 aa10.52□□□□□ -0.73
CLIP1-218ENST00000545889 MROH1Q8NDA8 1641 aa10.51□□□□□ -0.73
CLIP1-218ENST00000545889 COG6Q9Y2V7 657 aa10.51□□□□□ -0.73
CLIP1-218ENST00000545889 NSD2O96028 1365 aa10.51□□□□□ -0.73
CLIP1-218ENST00000545889 TTC21AQ8NDW8 1320 aa10.51□□□□□ -0.73
CLIP1-218ENST00000545889 GAS2L2Q8NHY3 880 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms