RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 RIMBP3BA6NNM3 1639 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 RIMBP3Q9UFD9 1639 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 ABCC4O15439 1325 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 MON2Q7Z3U7 1717 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 IBTKQ9P2D0 1353 aaPredicted RBP10.92□□□□□ -0.66
TDP1-204ENST00000545686 ZBTB7BO15156 539 aaPredicted RBP10.92□□□□□ -0.66
TDP1-204ENST00000545686 CLEC17AQ6ZS10 378 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 KIF2CQ99661 725 aa10.92□□□□□ -0.66
TDP1-204ENST00000545686 AK9Q5TCS8 1911 aa10.91□□□□□ -0.66
TDP1-204ENST00000545686 K7ELQ4 463 aaPredicted RBP10.91□□□□□ -0.66
TDP1-204ENST00000545686 IDI1Q13907 227 aa10.91□□□□□ -0.66
TDP1-204ENST00000545686 MRPL50Q8N5N7 158 aaKnown RBP10.91□□□□□ -0.66
TDP1-204ENST00000545686 NFE2L2Q16236 605 aa10.91□□□□□ -0.66
TDP1-204ENST00000545686 IFT57Q9NWB7 429 aa10.91□□□□□ -0.66
TDP1-204ENST00000545686 AKAP12Q02952 1782 aa10.9□□□□□ -0.66
TDP1-204ENST00000545686 NPM1P06748 294 aaKnown RBP eCLIP10.9□□□□□ -0.66
TDP1-204ENST00000545686 GNAI1P63096 354 aa10.9□□□□□ -0.66
TDP1-204ENST00000545686 SAFB2Q14151 953 aaKnown RBP eCLIP10.9□□□□□ -0.66
TDP1-204ENST00000545686 NUTM2DQ5VT03 806 aaPredicted RBP10.9□□□□□ -0.66
TDP1-204ENST00000545686 PRAM1Q96QH2 718 aa10.9□□□□□ -0.66
TDP1-204ENST00000545686 ITSN1Q15811 1721 aa10.9□□□□□ -0.66
TDP1-204ENST00000545686 NRKQ7Z2Y5 1582 aa10.9□□□□□ -0.67
TDP1-204ENST00000545686 MINK1Q8N4C8 1332 aaPredicted RBP10.9□□□□□ -0.67
TDP1-204ENST00000545686 VAMP4O75379 141 aa10.9□□□□□ -0.67
TDP1-204ENST00000545686 PRKAR2BP31323 418 aa10.9□□□□□ -0.67
TDP1-204ENST00000545686 TBC1D9Q6ZT07 1266 aa10.9□□□□□ -0.67
TDP1-204ENST00000545686 CDC45O75419 566 aa10.89□□□□□ -0.67
TDP1-204ENST00000545686 ANKRD45Q5TZF3 282 aa10.89□□□□□ -0.67
TDP1-204ENST00000545686 ARXQ96QS3 562 aa10.89□□□□□ -0.67
TDP1-204ENST00000545686 STK26Q9P289 416 aa10.89□□□□□ -0.67
TDP1-204ENST00000545686 ESPNB1AK53 854 aa10.88□□□□□ -0.67
TDP1-204ENST00000545686 GOLGA6L22H0YM25 854 aa10.88□□□□□ -0.67
TDP1-204ENST00000545686 HSP90AA1P07900 732 aaKnown RBP10.88□□□□□ -0.67
TDP1-204ENST00000545686 ZNF853P0CG23 659 aa10.88□□□□□ -0.67
TDP1-204ENST00000545686 LMOD3Q0VAK6 560 aa10.88□□□□□ -0.67
TDP1-204ENST00000545686 EDC4Q6P2E9 1401 aaKnown RBP10.88□□□□□ -0.67
TDP1-204ENST00000545686 API5Q9BZZ5 524 aaKnown RBP10.87□□□□□ -0.67
TDP1-204ENST00000545686 CPSF1Q10570 1443 aaKnown RBP10.87□□□□□ -0.67
TDP1-204ENST00000545686 AATKQ6ZMQ8 1374 aa10.87□□□□□ -0.67
TDP1-204ENST00000545686 C3P01024 1663 aa10.87□□□□□ -0.67
TDP1-204ENST00000545686 CDK19Q9BWU1 502 aa10.87□□□□□ -0.67
TDP1-204ENST00000545686 POLKQ9UBT6 870 aa10.87□□□□□ -0.67
TDP1-204ENST00000545686 TRIM44Q96DX7 344 aaPredicted RBP10.86□□□□□ -0.67
TDP1-204ENST00000545686 NAP1L5Q96NT1 182 aaPredicted RBP10.86□□□□□ -0.67
TDP1-204ENST00000545686 RABEP1Q15276 862 aa10.86□□□□□ -0.67
TDP1-204ENST00000545686 SIRT2Q8IXJ6 389 aa10.86□□□□□ -0.67
TDP1-204ENST00000545686 RIMS2Q9UQ26 1411 aa10.86□□□□□ -0.67
TDP1-204ENST00000545686 TUBGCP6Q96RT7 1819 aa10.86□□□□□ -0.67
TDP1-204ENST00000545686 KLHL40Q2TBA0 621 aa10.85□□□□□ -0.67
TDP1-204ENST00000545686 CD2BP2O95400 341 aaKnown RBP10.85□□□□□ -0.67
TDP1-204ENST00000545686 CCDC173Q0VFZ6 552 aa10.85□□□□□ -0.67
TDP1-204ENST00000545686 CABP1Q9NZU7 370 aa10.85□□□□□ -0.67
TDP1-204ENST00000545686 GAS2L3Q86XJ1 694 aa10.84□□□□□ -0.67
TDP1-204ENST00000545686 MBIPQ9NS73 344 aa10.84□□□□□ -0.67
TDP1-204ENST00000545686 TWISTNBQ3B726 338 aaPredicted RBP10.84□□□□□ -0.67
TDP1-204ENST00000545686 PPP1R9BQ96SB3 815 aa10.84□□□□□ -0.67
TDP1-204ENST00000545686 C1orf115Q9H7X2 142 aa10.84□□□□□ -0.67
TDP1-204ENST00000545686 IL13P35225 146 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 HAP1P54257 671 aaPredicted RBP10.83□□□□□ -0.68
TDP1-204ENST00000545686 NUCB2P80303 420 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 TSPYL6Q8N831 410 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 GAS2L2Q8NHY3 880 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 PHACTR3Q96KR7 559 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 DCTPP1Q9H773 170 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 ATP10DQ9P241 1426 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 ERBB4Q15303 1308 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 TTC22Q5TAA0 569 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 PLEKHM2Q8IWE5 1019 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 NRXN3Q9Y4C0 1643 aa10.83□□□□□ -0.68
TDP1-204ENST00000545686 RRP9O43818 475 aaKnown RBP10.82□□□□□ -0.68
TDP1-204ENST00000545686 BAG4O95429 457 aaKnown RBP10.82□□□□□ -0.68
TDP1-204ENST00000545686 GSPT1P15170 499 aaKnown RBP10.82□□□□□ -0.68
TDP1-204ENST00000545686 SSFA2P28290 1259 aa10.82□□□□□ -0.68
TDP1-204ENST00000545686 SPATA31D1Q6ZQQ2 1576 aa10.82□□□□□ -0.68
TDP1-204ENST00000545686 N4BP2Q86UW6 1770 aaPredicted RBP10.82□□□□□ -0.68
TDP1-204ENST00000545686 RAPGEF3O95398 923 aa10.82□□□□□ -0.68
TDP1-204ENST00000545686 INTS3Q68E01 1043 aaKnown RBP10.82□□□□□ -0.68
TDP1-204ENST00000545686 CACNA1FO60840 1977 aa10.82□□□□□ -0.68
TDP1-204ENST00000545686 RGPD1P0DJD0 1748 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 NALCNQ8IZF0 1738 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 CYP2E1P05181 493 aaPredicted RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 ZNF445P59923 1031 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 GLIPR1L2Q4G1C9 344 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 ANP32BQ92688 251 aaKnown RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 RGS12O14924 1447 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 HMOX1P09601 288 aa10.81□□□□□ -0.68
TDP1-204ENST00000545686 NASPP49321 788 aaPredicted RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 RBM42Q9BTD8 480 aaKnown RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 CWC22Q9HCG8 908 aaKnown RBP10.81□□□□□ -0.68
TDP1-204ENST00000545686 A2ML1A8K2U0 1454 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 TPM2P07951 284 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.8□□□□□ -0.68
TDP1-204ENST00000545686 RPAP2Q8IXW5 612 aaPredicted RBP10.8□□□□□ -0.68
TDP1-204ENST00000545686 ANKRD44Q8N8A2 993 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 DDX49Q9Y6V7 483 aaKnown RBP10.8□□□□□ -0.68
TDP1-204ENST00000545686 FMN2Q9NZ56 1722 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 AGLP35573 1532 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 CASC1Q6TDU7 716 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 C8orf58Q8NAV2 365 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms