RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 ADAM33Q9BZ11 813 aa7.37□□□□□ -1.23
CLIP1-217ENST00000543205 PLA2R1Q13018 1463 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 CCDC144AA2RUR9 1427 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 IL27Q8NEV9 243 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 ZNF428Q96B54 188 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 TRPM2O94759 1503 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 SPHKAPQ2M3C7 1700 aa7.36□□□□□ -1.23
CLIP1-217ENST00000543205 ZNF142P52746 1687 aaPredicted RBP7.36□□□□□ -1.23
CLIP1-217ENST00000543205 PTGDRQ13258 359 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 HIC1Q14526 733 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 ZNF326Q5BKZ1 582 aaKnown RBP7.35□□□□□ -1.23
CLIP1-217ENST00000543205 ANKLE2Q86XL3 938 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 PIK3C2BO00750 1634 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 GNPATO15228 680 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 RAD21O60216 631 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 HDGFP51858 240 aaKnown RBP7.35□□□□□ -1.23
CLIP1-217ENST00000543205 C6orf132Q5T0Z8 1188 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 EID1Q9Y6B2 187 aa7.35□□□□□ -1.23
CLIP1-217ENST00000543205 ANKRD30BQ9BXX2 1392 aa7.34□□□□□ -1.23
CLIP1-217ENST00000543205 RGS22Q8NE09 1264 aa7.34□□□□□ -1.23
CLIP1-217ENST00000543205 DHX57Q6P158 1386 aaKnown RBP7.34□□□□□ -1.23
CLIP1-217ENST00000543205 ADGRB3O60242 1522 aa7.34□□□□□ -1.23
CLIP1-217ENST00000543205 TXNDC2Q86VQ3 553 aa7.34□□□□□ -1.24
CLIP1-217ENST00000543205 TMEM2Q9UHN6 1383 aa7.33□□□□□ -1.24
CLIP1-217ENST00000543205 CLTCL1P53675 1640 aa7.33□□□□□ -1.24
CLIP1-217ENST00000543205 UBR1Q8IWV7 1749 aa7.33□□□□□ -1.24
CLIP1-217ENST00000543205 PPP1R15AO75807 674 aaPredicted RBP7.33□□□□□ -1.24
CLIP1-217ENST00000543205 RGL3Q3MIN7 710 aa7.33□□□□□ -1.24
CLIP1-217ENST00000543205 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.33□□□□□ -1.24
CLIP1-217ENST00000543205 IFFO2Q5TF58 517 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 CCDC82Q8N4S0 544 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 BCL2L12Q9HB09 334 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 NPDC1Q9NQX5 325 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-217ENST00000543205 MTMR7Q9Y216 660 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 TMEM131LA2VDJ0 1609 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 KDM5AP29375 1690 aaKnown RBP7.32□□□□□ -1.24
CLIP1-217ENST00000543205 RIMS2Q9UQ26 1411 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 LTKP29376 864 aa7.32□□□□□ -1.24
CLIP1-217ENST00000543205 NUTM2DQ5VT03 806 aaPredicted RBP7.32□□□□□ -1.24
CLIP1-217ENST00000543205 RPGRIP1LQ68CZ1 1315 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 SLIT1O75093 1534 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 FECHP22830 423 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 PTPREP23469 700 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 MAP2K5Q13163 448 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 SCAF11Q99590 1463 aaKnown RBP7.31□□□□□ -1.24
CLIP1-217ENST00000543205 ARHGAP23Q9P227 1491 aa7.31□□□□□ -1.24
CLIP1-217ENST00000543205 NEUROD1Q13562 356 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 AK7Q96M32 723 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 KIF1BO60333 1816 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 CCER1Q8TC90 406 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-217ENST00000543205 SIN3AQ96ST3 1273 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 NPHP4O75161 1426 aaPredicted RBP7.3□□□□□ -1.24
CLIP1-217ENST00000543205 ZFYVE9O95405 1425 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 SPATA31E1Q6ZUB1 1445 aa7.3□□□□□ -1.24
CLIP1-217ENST00000543205 MINK1Q8N4C8 1332 aaPredicted RBP7.29□□□□□ -1.24
CLIP1-217ENST00000543205 CDK11BP21127 795 aaKnown RBP7.29□□□□□ -1.24
CLIP1-217ENST00000543205 FOXD4L5Q5VV16 416 aaPredicted RBP7.28□□□□□ -1.24
CLIP1-217ENST00000543205 FOXD4L4Q8WXT5 416 aaPredicted RBP7.28□□□□□ -1.24
CLIP1-217ENST00000543205 CCDC102AQ96A19 550 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 KCNK17Q96T54 332 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 MYO5BQ9ULV0 1848 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 MED14O60244 1454 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 STRCQ7RTU9 1775 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 PLEKHG1Q9ULL1 1385 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 PPP1R3GB7ZBB8 358 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 COL9A1P20849 921 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 PADI6Q6TGC4 694 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 IQSEC2Q5JU85 1478 aa7.28□□□□□ -1.24
CLIP1-217ENST00000543205 NEURL4Q96JN8 1562 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 IRF6O14896 467 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 DCAF11Q8TEB1 546 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 NEXMIFQ5QGS0 1516 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 POLR1AO95602 1720 aaPredicted RBP7.27□□□□□ -1.25
CLIP1-217ENST00000543205 STAC3Q96MF2 364 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 SLC26A8Q96RN1 970 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 CHMP4AQ9BY43 222 aa7.27□□□□□ -1.25
CLIP1-217ENST00000543205 CLSPNQ9HAW4 1339 aa7.26□□□□□ -1.25
CLIP1-217ENST00000543205 PRSS12P56730 875 aa7.26□□□□□ -1.25
CLIP1-217ENST00000543205 CDCA7LQ96GN5 454 aa7.26□□□□□ -1.25
CLIP1-217ENST00000543205 ADGRF5Q8IZF2 1346 aa7.26□□□□□ -1.25
CLIP1-217ENST00000543205 IQGAP1P46940 1657 aa7.26□□□□□ -1.25
CLIP1-217ENST00000543205 UBAP1LF5GYI3 381 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 TRIM66O15016 1216 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 RBM25P49756 843 aaKnown RBP7.25□□□□□ -1.25
CLIP1-217ENST00000543205 AEBP1Q8IUX7 1158 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 RBM27Q9P2N5 1060 aaKnown RBP7.25□□□□□ -1.25
CLIP1-217ENST00000543205 TBX22Q9Y458 520 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 LTBP4Q8N2S1 1624 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 TONSLQ96HA7 1378 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 PSEN2P49810 448 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 L3MBTL2Q969R5 705 aa7.25□□□□□ -1.25
CLIP1-217ENST00000543205 PPLO60437 1756 aa7.24□□□□□ -1.25
CLIP1-217ENST00000543205 TK2O00142 265 aa7.24□□□□□ -1.25
CLIP1-217ENST00000543205 HSP90B1P14625 803 aaKnown RBP7.24□□□□□ -1.25
CLIP1-217ENST00000543205 KDM4CQ9H3R0 1056 aa7.24□□□□□ -1.25
CLIP1-217ENST00000543205 ARHGAP33O14559 1287 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 ADGRD1Q6QNK2 874 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 AXIN2Q9Y2T1 843 aa7.23□□□□□ -1.25
CLIP1-217ENST00000543205 ZNF335Q9H4Z2 1342 aaPredicted RBP7.23□□□□□ -1.25
CLIP1-217ENST00000543205 ADAMTS13Q76LX8 1427 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms