RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MTHFSP49914 203 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 HDGFL2Q7Z4V5 671 aaPredicted RBP10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 BACH2Q9BYV9 841 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 EDC4Q6P2E9 1401 aaKnown RBP10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 FAM43AQ8N2R8 423 aa10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 SLC26A8Q96RN1 970 aa10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 GGNBP2Q9H3C7 697 aa10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 CCDC146Q8IYE0 955 aa10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 NKTRP30414 1462 aaKnown RBP10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 EXOC6Q8TAG9 804 aa10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 NUDT16Q96DE0 195 aaKnown RBP10.23□□□□□ -0.77
PDLIM5-221ENST00000542407 NCKAP5LQ9HCH0 1330 aa10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 SKAP1Q86WV1 359 aa10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 ZNF592Q92610 1267 aa10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 DDRGK1Q96HY6 314 aa10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 PNPLA6Q8IY17 1366 aa10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 HSP90AA1P07900 732 aaKnown RBP10.22□□□□□ -0.77
PDLIM5-221ENST00000542407 RGL2O15211 777 aa10.21□□□□□ -0.77
PDLIM5-221ENST00000542407 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.77
PDLIM5-221ENST00000542407 HMGB1P09429 215 aaKnown RBP10.21□□□□□ -0.78
PDLIM5-221ENST00000542407 TRMT2AQ8IZ69 625 aaKnown RBP10.21□□□□□ -0.78
PDLIM5-221ENST00000542407 APAF1O14727 1248 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 DUSP27Q5VZP5 1158 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 TMED8Q6PL24 325 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 ZNF830Q96NB3 372 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 AMOTL2Q9Y2J4 779 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 CCDC61Q9Y6R9 512 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 PIK3R4Q99570 1358 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 SPRYD3Q8NCJ5 442 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 RCAN3Q9UKA8 241 aa10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 FRAT2O75474 233 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-221ENST00000542407 CHD2O14647 1828 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 RRP1P56182 461 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 SLFN5Q08AF3 891 aa10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 NGEFQ8N5V2 710 aa10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 CFAP53Q96M91 514 aa10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 SPINK5Q9NQ38 1064 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-221ENST00000542407 SSH2Q76I76 1423 aa10.18□□□□□ -0.78
PDLIM5-221ENST00000542407 DMRT2Q9Y5R5 561 aa10.18□□□□□ -0.78
PDLIM5-221ENST00000542407 NALCNQ8IZF0 1738 aa10.18□□□□□ -0.78
PDLIM5-221ENST00000542407 GOLGA2Q08379 1002 aa10.18□□□□□ -0.78
PDLIM5-221ENST00000542407 RUNDC1Q96C34 613 aa10.18□□□□□ -0.78
PDLIM5-221ENST00000542407 FMN2Q9NZ56 1722 aa10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 PLEKHG3A1L390 1219 aa10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 NME9Q86XW9 330 aa10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 AATKQ6ZMQ8 1374 aa10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 RGPD8O14715 1765 aaPredicted RBP10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 MAP2P11137 1827 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-221ENST00000542407 USP6P35125 1406 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 PLEKHF1Q96S99 279 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 POLKQ9UBT6 870 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 CDK12Q9NYV4 1490 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 OVOS2A0A0J9YW53 1432 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 OVOS2Q6IE36 1432 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 RRAGDQ9NQL2 400 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 ZRANB1Q9UGI0 708 aa10.16□□□□□ -0.78
PDLIM5-221ENST00000542407 SETD1BQ9UPS6 1966 aaKnown RBP10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 MS4A1P11836 297 aa10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 KCNA6P17658 529 aa10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 ZNF692Q9BU19 519 aaPredicted RBP10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 FAM43BQ6ZT52 329 aaPredicted RBP10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 TCP11L2Q8N4U5 519 aa10.15□□□□□ -0.78
PDLIM5-221ENST00000542407 LRRC7Q96NW7 1537 aa10.15□□□□□ -0.79
PDLIM5-221ENST00000542407 ANKARQ7Z5J8 1434 aa10.15□□□□□ -0.79
PDLIM5-221ENST00000542407 ACEP12821 1306 aa10.15□□□□□ -0.79
PDLIM5-221ENST00000542407 CLSTN1O94985 981 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 FBLN1P23142 703 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 CCDC27Q2M243 656 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 GRIPAP1Q4V328 841 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 RGS22Q8NE09 1264 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 ANKLE2Q86XL3 938 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 NWD1Q149M9 1564 aa10.14□□□□□ -0.79
PDLIM5-221ENST00000542407 TTC21BQ7Z4L5 1316 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 USP54Q70EL1 1684 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 E9PSI1 815 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 U2AF1L5P0DN76 240 aaPredicted RBP10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 U2AF1Q01081 240 aaKnown RBP eCLIP10.13□□□□□ -0.791e-7■■■■■ 28.2
PDLIM5-221ENST00000542407 MARF1Q9Y4F3 1742 aaKnown RBP10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 NPHP4O75161 1426 aaPredicted RBP10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 FAM193AP78312 1265 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 PEAK1Q9H792 1746 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 PIK3C2AO00443 1686 aa10.13□□□□□ -0.79
PDLIM5-221ENST00000542407 TMEM51Q9NW97 253 aa10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 RRP7AQ9Y3A4 280 aaKnown RBP10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 EMILIN1Q9Y6C2 1016 aa10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 DIAPH1O60610 1272 aaKnown RBP10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 ECM2O94769 699 aaPredicted RBP10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 ARID3AQ99856 593 aa10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 USP31Q70CQ4 1352 aa10.12□□□□□ -0.79
PDLIM5-221ENST00000542407 PLCD4Q9BRC7 762 aa10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 NUTM2FA1L443 756 aa10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 PATL2C9JE40 543 aaKnown RBP10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 PLIN1O60240 522 aa10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 BRPF1P55201 1214 aaPredicted RBP10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 WDR63Q8IWG1 891 aa10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 COG3Q96JB2 828 aa10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 PNNQ9H307 717 aaKnown RBP10.11□□□□□ -0.79
PDLIM5-221ENST00000542407 RGPD1P0DJD0 1748 aa10.1□□□□□ -0.79
PDLIM5-221ENST00000542407 IL13P35225 146 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms