RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 NFE2L2Q16236 605 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 SSH1Q8WYL5 1049 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 CCDC61Q9Y6R9 512 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 AKAP12Q02952 1782 aa12.64□□□□□ -0.39
LMO3-227ENST00000541764 TRIM27P14373 513 aa12.63□□□□□ -0.39
LMO3-227ENST00000541764 IL13P35225 146 aa12.63□□□□□ -0.39
LMO3-227ENST00000541764 TSR2Q969E8 191 aaKnown RBP12.63□□□□□ -0.39
LMO3-227ENST00000541764 SMC4Q9NTJ3 1288 aa12.63□□□□□ -0.39
LMO3-227ENST00000541764 TNNQ9UQP3 1299 aa12.63□□□□□ -0.39
LMO3-227ENST00000541764 C3P01024 1663 aa12.63□□□□□ -0.39
LMO3-227ENST00000541764 UBR1Q8IWV7 1749 aa12.62□□□□□ -0.39
LMO3-227ENST00000541764 MYCNP04198 464 aaPredicted RBP12.62□□□□□ -0.39
LMO3-227ENST00000541764 NEFMP07197 916 aa12.62□□□□□ -0.39
LMO3-227ENST00000541764 FTSJ3Q8IY81 847 aaKnown RBP12.62□□□□□ -0.39
LMO3-227ENST00000541764 ARHGAP45Q92619 1136 aa12.62□□□□□ -0.39
LMO3-227ENST00000541764 NUDT16Q96DE0 195 aaKnown RBP12.62□□□□□ -0.39
LMO3-227ENST00000541764 PDZRN3Q9UPQ7 1066 aa12.62□□□□□ -0.39
LMO3-227ENST00000541764 PIK3R4Q99570 1358 aa12.62□□□□□ -0.39
LMO3-227ENST00000541764 ADAMTS13Q76LX8 1427 aa12.61□□□□□ -0.39
LMO3-227ENST00000541764 ZNF853P0CG23 659 aa12.61□□□□□ -0.39
LMO3-227ENST00000541764 ESF1Q9H501 851 aaKnown RBP12.61□□□□□ -0.39
LMO3-227ENST00000541764 PLEKHG1Q9ULL1 1385 aa12.61□□□□□ -0.39
LMO3-227ENST00000541764 MAP2P11137 1827 aaKnown RBP12.6□□□□□ -0.39
LMO3-227ENST00000541764 PRKAR2BP31323 418 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 LMOD3Q0VAK6 560 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 SMC5Q8IY18 1101 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 BCL2L13Q9BXK5 485 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 CHMP4BQ9H444 224 aaKnown RBP12.6□□□□□ -0.39
LMO3-227ENST00000541764 IFT57Q9NWB7 429 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 NRKQ7Z2Y5 1582 aa12.6□□□□□ -0.39
LMO3-227ENST00000541764 ZBTB40Q9NUA8 1239 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 DAXXQ9UER7 740 aaPredicted RBP12.59□□□□□ -0.39
LMO3-227ENST00000541764 PTCH1Q13635 1447 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 TOPAZ1Q8N9V7 1692 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 PLEKHG3A1L390 1219 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 GNAI1P63096 354 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.59□□□□□ -0.39
LMO3-227ENST00000541764 COG3Q96JB2 828 aa12.59□□□□□ -0.39
LMO3-227ENST00000541764 NOB1Q9ULX3 412 aaKnown RBP12.59□□□□□ -0.39
LMO3-227ENST00000541764 ITSN1Q15811 1721 aa12.58□□□□□ -0.4
LMO3-227ENST00000541764 TXNDC2Q86VQ3 553 aa12.58□□□□□ -0.4
LMO3-227ENST00000541764 MLECQ14165 292 aa12.57□□□□□ -0.4
LMO3-227ENST00000541764 NME9Q86XW9 330 aa12.57□□□□□ -0.4
LMO3-227ENST00000541764 KIF24Q5T7B8 1368 aa12.57□□□□□ -0.4
LMO3-227ENST00000541764 SLIT1O75093 1534 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 ARHGAP23Q9P227 1491 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 OVOS2A0A0J9YW53 1432 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 OVOS2Q6IE36 1432 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 USP31Q70CQ4 1352 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 ROBO2Q9HCK4 1378 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 PRR36Q9H6K5 1346 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 VAMP4O75379 141 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 TMEM57Q8N5G2 664 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 PHACTR3Q96KR7 559 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 TBC1D32Q96NH3 1257 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 LAS1LQ9Y4W2 734 aaKnown RBP12.56□□□□□ -0.4
LMO3-227ENST00000541764 EMILIN1Q9Y6C2 1016 aa12.56□□□□□ -0.4
LMO3-227ENST00000541764 SSH2Q76I76 1423 aa12.55□□□□□ -0.4
LMO3-227ENST00000541764 BECN1Q14457 450 aa12.55□□□□□ -0.4
LMO3-227ENST00000541764 MRPL50Q8N5N7 158 aaKnown RBP12.55□□□□□ -0.4
LMO3-227ENST00000541764 CFAP44Q96MT7 982 aa12.55□□□□□ -0.4
LMO3-227ENST00000541764 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
LMO3-227ENST00000541764 ITPRIPQ8IWB1 547 aa12.54□□□□□ -0.4
LMO3-227ENST00000541764 NALCNQ8IZF0 1738 aa12.54□□□□□ -0.4
LMO3-227ENST00000541764 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.54□□□□□ -0.4
LMO3-227ENST00000541764 TTC21BQ7Z4L5 1316 aa12.54□□□□□ -0.4
LMO3-227ENST00000541764 SEC24BO95487 1268 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 NFKBIBQ15653 356 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 LHX8Q68G74 356 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 BCL11AQ9H165 835 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 USP6P35125 1406 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 ABCC4O15439 1325 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 DIP2AQ14689 1571 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 HAP1P54257 671 aaPredicted RBP12.53□□□□□ -0.4
LMO3-227ENST00000541764 NUCB1Q02818 461 aa12.53□□□□□ -0.4
LMO3-227ENST00000541764 ZBTB7BO15156 539 aaPredicted RBP12.52□□□□□ -0.41
LMO3-227ENST00000541764 TBX22Q9Y458 520 aa12.52□□□□□ -0.41
LMO3-227ENST00000541764 TTC21AQ8NDW8 1320 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 RGPD1P0DJD0 1748 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 HMOX1P09601 288 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 FBLN1P23142 703 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 GCC1Q96CN9 775 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 MBIPQ9NS73 344 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
LMO3-227ENST00000541764 KIAA0232Q92628 1395 aa12.5□□□□□ -0.41
LMO3-227ENST00000541764 LTKP29376 864 aa12.5□□□□□ -0.41
LMO3-227ENST00000541764 SLC4A3P48751 1232 aa12.5□□□□□ -0.41
LMO3-227ENST00000541764 API5Q9BZZ5 524 aaKnown RBP12.5□□□□□ -0.41
LMO3-227ENST00000541764 PTPRUQ92729 1446 aa12.5□□□□□ -0.41
LMO3-227ENST00000541764 ACEP12821 1306 aa12.49□□□□□ -0.41
LMO3-227ENST00000541764 DLG5Q8TDM6 1919 aa12.49□□□□□ -0.41
LMO3-227ENST00000541764 EIF4A2Q14240 407 aaKnown RBP12.48□□□□□ -0.41
LMO3-227ENST00000541764 TWISTNBQ3B726 338 aaPredicted RBP12.48□□□□□ -0.41
LMO3-227ENST00000541764 EID1Q9Y6B2 187 aa12.48□□□□□ -0.41
LMO3-227ENST00000541764 RIMS1Q86UR5 1692 aaKnown RBP12.48□□□□□ -0.41
LMO3-227ENST00000541764 ARHGEF10O15013 1369 aa12.48□□□□□ -0.41
LMO3-227ENST00000541764 NCKAP5LQ9HCH0 1330 aa12.48□□□□□ -0.41
LMO3-227ENST00000541764 CHL1O00533 1208 aa12.47□□□□□ -0.41
LMO3-227ENST00000541764 RRS1Q15050 365 aaKnown RBP12.47□□□□□ -0.41
LMO3-227ENST00000541764 TSPYL6Q8N831 410 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms