RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MAP3K19Q56UN5 1328 aa18.79■□□□□ 0.6
CLIP1-216ENST00000541410 FAM83GA6ND36 823 aa18.78■□□□□ 0.6
CLIP1-216ENST00000541410 NFE2L2Q16236 605 aa18.78■□□□□ 0.6
CLIP1-216ENST00000541410 TTC21AQ8NDW8 1320 aa18.78■□□□□ 0.6
CLIP1-216ENST00000541410 DLG5Q8TDM6 1919 aa18.78■□□□□ 0.6
CLIP1-216ENST00000541410 DCTN1Q14203 1278 aa18.77■□□□□ 0.6
CLIP1-216ENST00000541410 NCBP3Q53F19 620 aaKnown RBP18.77■□□□□ 0.6
CLIP1-216ENST00000541410 ESCO1Q5FWF5 840 aa18.77■□□□□ 0.6
CLIP1-216ENST00000541410 ABTB2Q8N961 1025 aa18.77■□□□□ 0.6
CLIP1-216ENST00000541410 PIK3C2AO00443 1686 aa18.77■□□□□ 0.6
CLIP1-216ENST00000541410 RLBP1P12271 317 aa18.77■□□□□ 0.6
CLIP1-216ENST00000541410 PHF8Q9UPP1 1060 aa18.76■□□□□ 0.59
CLIP1-216ENST00000541410 USP31Q70CQ4 1352 aa18.76■□□□□ 0.59
CLIP1-216ENST00000541410 ANKARQ7Z5J8 1434 aa18.75■□□□□ 0.59
CLIP1-216ENST00000541410 XPCQ01831 940 aaPredicted RBP18.75■□□□□ 0.59
CLIP1-216ENST00000541410 AMPHP49418 695 aa18.75■□□□□ 0.59
CLIP1-216ENST00000541410 SMC4Q9NTJ3 1288 aa18.74■□□□□ 0.59
CLIP1-216ENST00000541410 SSH1Q8WYL5 1049 aa18.73■□□□□ 0.59
CLIP1-216ENST00000541410 ELL2O00472 640 aaPredicted RBP18.73■□□□□ 0.59
CLIP1-216ENST00000541410 PDE3AQ14432 1141 aa18.73■□□□□ 0.59
CLIP1-216ENST00000541410 ORAI2Q96SN7 254 aa18.73■□□□□ 0.59
CLIP1-216ENST00000541410 IL16Q14005 1332 aa18.72■□□□□ 0.59
CLIP1-216ENST00000541410 HSPA2P54652 639 aa18.71■□□□□ 0.59
CLIP1-216ENST00000541410 PROSER2Q86WR7 435 aaPredicted RBP18.71■□□□□ 0.59
CLIP1-216ENST00000541410 LTV1Q96GA3 475 aaPredicted RBP18.71■□□□□ 0.59
CLIP1-216ENST00000541410 ADGRL3Q9HAR2 1447 aa18.71■□□□□ 0.59
CLIP1-216ENST00000541410 KDM2BQ8NHM5 1336 aa18.71■□□□□ 0.58
CLIP1-216ENST00000541410 ZBTB7CA1YPR0 619 aa18.7■□□□□ 0.58
CLIP1-216ENST00000541410 PSME1Q06323 249 aa18.7■□□□□ 0.58
CLIP1-216ENST00000541410 TCERG1O14776 1098 aaKnown RBP18.7■□□□□ 0.58
CLIP1-216ENST00000541410 FOXO3O43524 673 aa18.7■□□□□ 0.58
CLIP1-216ENST00000541410 MARF1Q9Y4F3 1742 aaKnown RBP18.69■□□□□ 0.58
CLIP1-216ENST00000541410 TSPYL6Q8N831 410 aa18.69■□□□□ 0.58
CLIP1-216ENST00000541410 MBIPQ9NS73 344 aa18.68■□□□□ 0.58
CLIP1-216ENST00000541410 SBNO1A3KN83 1393 aa18.68■□□□□ 0.58
CLIP1-216ENST00000541410 FLT4P35916 1363 aa18.68■□□□□ 0.58
CLIP1-216ENST00000541410 IGHDP01880 384 aa18.68■□□□□ 0.58
CLIP1-216ENST00000541410 MCM10Q7L590 875 aa18.68■□□□□ 0.58
CLIP1-216ENST00000541410 LMOD2Q6P5Q4 547 aa18.67■□□□□ 0.58
CLIP1-216ENST00000541410 EYA1Q99502 592 aa18.67■□□□□ 0.58
CLIP1-216ENST00000541410 NOB1Q9ULX3 412 aaKnown RBP18.67■□□□□ 0.58
CLIP1-216ENST00000541410 ZKSCAN2Q63HK3 967 aa18.67■□□□□ 0.58
CLIP1-216ENST00000541410 CENPQQ7L2Z9 268 aaPredicted RBP18.67■□□□□ 0.58
CLIP1-216ENST00000541410 FTSJ3Q8IY81 847 aaKnown RBP18.66■□□□□ 0.58
CLIP1-216ENST00000541410 TRIM27P14373 513 aa18.66■□□□□ 0.58
CLIP1-216ENST00000541410 HOXC9P31274 260 aa18.65■□□□□ 0.58
CLIP1-216ENST00000541410 RGPD1P0DJD0 1748 aa18.65■□□□□ 0.58
CLIP1-216ENST00000541410 CT47B1P0C2W7 299 aaPredicted RBP18.64■□□□□ 0.58
CLIP1-216ENST00000541410 GNAI1P63096 354 aa18.64■□□□□ 0.58
CLIP1-216ENST00000541410 DZIP1LQ8IYY4 767 aaKnown RBP18.64■□□□□ 0.57
CLIP1-216ENST00000541410 RGS3P49796 1198 aa18.63■□□□□ 0.57
CLIP1-216ENST00000541410 USHBP1Q8N6Y0 703 aa18.63■□□□□ 0.57
CLIP1-216ENST00000541410 IFT57Q9NWB7 429 aa18.63■□□□□ 0.57
CLIP1-216ENST00000541410 LMOD3Q0VAK6 560 aa18.63■□□□□ 0.57
CLIP1-216ENST00000541410 C8orf58Q8NAV2 365 aa18.63■□□□□ 0.57
CLIP1-216ENST00000541410 ZNF853P0CG23 659 aa18.62■□□□□ 0.57
CLIP1-216ENST00000541410 MTHFSDQ2M296 383 aaKnown RBP18.62■□□□□ 0.57
CLIP1-216ENST00000541410 KRT24Q2M2I5 525 aa18.62■□□□□ 0.57
CLIP1-216ENST00000541410 PCDHB15Q9Y5E8 787 aa18.62■□□□□ 0.57
CLIP1-216ENST00000541410 CALD1Q05682 793 aaKnown RBP18.62■□□□□ 0.57
CLIP1-216ENST00000541410 CFAP44Q96MT7 982 aa18.62■□□□□ 0.57
CLIP1-216ENST00000541410 VAMP4O75379 141 aa18.61■□□□□ 0.57
CLIP1-216ENST00000541410 MIS18AQ9NYP9 233 aa18.61■□□□□ 0.57
CLIP1-216ENST00000541410 MVPQ14764 893 aaKnown RBP18.61■□□□□ 0.57
CLIP1-216ENST00000541410 ATF7IPQ6VMQ6 1270 aa18.61■□□□□ 0.57
CLIP1-216ENST00000541410 ITPRIPQ8IWB1 547 aa18.61■□□□□ 0.57
CLIP1-216ENST00000541410 DDX17Q92841 729 aaKnown RBP18.61■□□□□ 0.57
CLIP1-216ENST00000541410 LTN1O94822 1766 aa18.61■□□□□ 0.57
CLIP1-216ENST00000541410 ARHGEF10O15013 1369 aa18.6■□□□□ 0.57
CLIP1-216ENST00000541410 PDE4AP27815 886 aa18.59■□□□□ 0.57
CLIP1-216ENST00000541410 TWISTNBQ3B726 338 aaPredicted RBP18.59■□□□□ 0.57
CLIP1-216ENST00000541410 IGSF1Q8N6C5 1336 aa18.59■□□□□ 0.57
CLIP1-216ENST00000541410 MSH5O43196 834 aa18.59■□□□□ 0.57
CLIP1-216ENST00000541410 TMEM57Q8N5G2 664 aa18.59■□□□□ 0.57
CLIP1-216ENST00000541410 STRCP1A6NGW2 1772 aa18.58■□□□□ 0.57
CLIP1-216ENST00000541410 NWD1Q149M9 1564 aa18.58■□□□□ 0.57
CLIP1-216ENST00000541410 C19orf44Q9H6X5 657 aa18.57■□□□□ 0.56
CLIP1-216ENST00000541410 TMEM94Q12767 1356 aa18.57■□□□□ 0.56
CLIP1-216ENST00000541410 ALDH1L2Q3SY69 923 aa18.56■□□□□ 0.56
CLIP1-216ENST00000541410 NPM2Q86SE8 214 aaKnown RBP18.56■□□□□ 0.56
CLIP1-216ENST00000541410 KRT28Q7Z3Y7 464 aa18.55■□□□□ 0.56
CLIP1-216ENST00000541410 KIF16BQ96L93 1317 aa18.55■□□□□ 0.56
CLIP1-216ENST00000541410 KDRP35968 1356 aa18.55■□□□□ 0.56
CLIP1-216ENST00000541410 MRPL50Q8N5N7 158 aaKnown RBP18.54■□□□□ 0.56
CLIP1-216ENST00000541410 RTF1Q92541 710 aaKnown RBP18.54■□□□□ 0.56
CLIP1-216ENST00000541410 C1orf167Q5SNV9 1468 aa18.54■□□□□ 0.56
CLIP1-216ENST00000541410 ATF3P18847 181 aa18.54■□□□□ 0.56
CLIP1-216ENST00000541410 LRRC59Q96AG4 307 aaKnown RBP18.54■□□□□ 0.56
CLIP1-216ENST00000541410 BACH2Q9BYV9 841 aa18.54■□□□□ 0.56
CLIP1-216ENST00000541410 USP54Q70EL1 1684 aa18.54■□□□□ 0.56
CLIP1-216ENST00000541410 IPO8O15397 1037 aaKnown RBP18.53■□□□□ 0.56
CLIP1-216ENST00000541410 RGPD2P0DJD1 1756 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 GCP02774 474 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 MS4A1P11836 297 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 NBPF6Q5VWK0 638 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 IP6K1Q92551 441 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 NBPF4Q96M43 638 aa18.53■□□□□ 0.56
CLIP1-216ENST00000541410 NFAT5O94916 1531 aa18.52■□□□□ 0.56
CLIP1-216ENST00000541410 KDM4FA0A1W2PPD8 638 aa18.52■□□□□ 0.56
CLIP1-216ENST00000541410 CHL1O00533 1208 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms