RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 PIK3C2AO00443 1686 aa22.09■■□□□ 1.13
SPIDR-227ENST00000541342 FCHSD2O94868 740 aa22.09■■□□□ 1.13
SPIDR-227ENST00000541342 PEAK1Q9H792 1746 aa22.08■■□□□ 1.13
SPIDR-227ENST00000541342 USP31Q70CQ4 1352 aa22.08■■□□□ 1.13
SPIDR-227ENST00000541342 TTC21AQ8NDW8 1320 aa22.07■■□□□ 1.12
SPIDR-227ENST00000541342 HMOX1P09601 288 aa22.06■■□□□ 1.12
SPIDR-227ENST00000541342 PRKAR2BP31323 418 aa22.06■■□□□ 1.12
SPIDR-227ENST00000541342 RGS3P49796 1198 aa22.06■■□□□ 1.12
SPIDR-227ENST00000541342 NFKBIBQ15653 356 aa22.06■■□□□ 1.12
SPIDR-227ENST00000541342 PNNQ9H307 717 aaKnown RBP22.05■■□□□ 1.12
SPIDR-227ENST00000541342 MARF1Q9Y4F3 1742 aaKnown RBP22.05■■□□□ 1.12
SPIDR-227ENST00000541342 ADGRL3Q9HAR2 1447 aa22.05■■□□□ 1.12
SPIDR-227ENST00000541342 NWD1Q149M9 1564 aa22.04■■□□□ 1.12
SPIDR-227ENST00000541342 IGHDP01880 384 aa22.03■■□□□ 1.12
SPIDR-227ENST00000541342 RIPK4P57078 832 aa22.03■■□□□ 1.12
SPIDR-227ENST00000541342 PHACTR3Q96KR7 559 aa22.03■■□□□ 1.12
SPIDR-227ENST00000541342 SOX12O15370 315 aa22.01■■□□□ 1.11
SPIDR-227ENST00000541342 EIF4A2Q14240 407 aaKnown RBP22■■□□□ 1.11
SPIDR-227ENST00000541342 MYH16Q9H6N6 1097 aa22■■□□□ 1.11
SPIDR-227ENST00000541342 USP54Q70EL1 1684 aa21.99■■□□□ 1.11
SPIDR-227ENST00000541342 TSR2Q969E8 191 aaKnown RBP21.98■■□□□ 1.11
SPIDR-227ENST00000541342 RGPD1P0DJD0 1748 aa21.98■■□□□ 1.11
SPIDR-227ENST00000541342 DLG5Q8TDM6 1919 aa21.98■■□□□ 1.11
SPIDR-227ENST00000541342 USP19O94966 1318 aa21.98■■□□□ 1.11
SPIDR-227ENST00000541342 HSP90AB2PQ58FF8 381 aa21.98■■□□□ 1.11
SPIDR-227ENST00000541342 PHF8Q9UPP1 1060 aa21.98■■□□□ 1.11
SPIDR-227ENST00000541342 MAP3K19Q56UN5 1328 aa21.97■■□□□ 1.11
SPIDR-227ENST00000541342 RARSP54136 660 aaKnown RBP21.97■■□□□ 1.11
SPIDR-227ENST00000541342 NFE2L2Q16236 605 aa21.96■■□□□ 1.11
SPIDR-227ENST00000541342 IL16Q14005 1332 aa21.96■■□□□ 1.11
SPIDR-227ENST00000541342 PDE3AQ14432 1141 aa21.96■■□□□ 1.11
SPIDR-227ENST00000541342 GSE1Q14687 1217 aa21.96■■□□□ 1.11
SPIDR-227ENST00000541342 NUTM2GQ5VZR2 741 aa21.95■■□□□ 1.1
SPIDR-227ENST00000541342 PANK1Q8TE04 598 aa21.95■■□□□ 1.1
SPIDR-227ENST00000541342 NLRP6P59044 892 aa21.95■■□□□ 1.1
SPIDR-227ENST00000541342 AEBP1Q8IUX7 1158 aa21.94■■□□□ 1.1
SPIDR-227ENST00000541342 C14orf37Q86TY3 774 aa21.93■■□□□ 1.1
SPIDR-227ENST00000541342 CLUAP1Q96AJ1 413 aa21.93■■□□□ 1.1
SPIDR-227ENST00000541342 COG6Q9Y2V7 657 aa21.93■■□□□ 1.1
SPIDR-227ENST00000541342 STRCP1A6NGW2 1772 aa21.93■■□□□ 1.1
SPIDR-227ENST00000541342 ESCO1Q5FWF5 840 aa21.92■■□□□ 1.1
SPIDR-227ENST00000541342 SBNO1A3KN83 1393 aa21.92■■□□□ 1.1
SPIDR-227ENST00000541342 DAXXQ9UER7 740 aaPredicted RBP21.92■■□□□ 1.1
SPIDR-227ENST00000541342 ABTB2Q8N961 1025 aa21.91■■□□□ 1.1
SPIDR-227ENST00000541342 SEC24BO95487 1268 aa21.91■■□□□ 1.1
SPIDR-227ENST00000541342 EXOSC9Q06265 439 aaKnown RBP21.91■■□□□ 1.1
SPIDR-227ENST00000541342 FLT4P35916 1363 aa21.91■■□□□ 1.1
SPIDR-227ENST00000541342 SULT6B1Q6IMI4 303 aa21.91■■□□□ 1.1
SPIDR-227ENST00000541342 RTN4Q9NQC3 1192 aaKnown RBP21.91■■□□□ 1.1
SPIDR-227ENST00000541342 FRAT1Q92837 279 aaPredicted RBP21.9■■□□□ 1.1
SPIDR-227ENST00000541342 BCL2L13Q9BXK5 485 aa21.9■■□□□ 1.1
SPIDR-227ENST00000541342 PROSER2Q86WR7 435 aaPredicted RBP21.9■■□□□ 1.1
SPIDR-227ENST00000541342 THUMPD2Q9BTF0 503 aaKnown RBP21.9■■□□□ 1.1
SPIDR-227ENST00000541342 FRAT2O75474 233 aaPredicted RBP21.89■■□□□ 1.1
SPIDR-227ENST00000541342 ORAI2Q96SN7 254 aa21.88■■□□□ 1.09
SPIDR-227ENST00000541342 BRPF3Q9ULD4 1205 aa21.88■■□□□ 1.09
SPIDR-227ENST00000541342 HSPA2P54652 639 aa21.87■■□□□ 1.09
SPIDR-227ENST00000541342 TNNQ9UQP3 1299 aa21.87■■□□□ 1.09
SPIDR-227ENST00000541342 CT47B1P0C2W7 299 aaPredicted RBP21.86■■□□□ 1.09
SPIDR-227ENST00000541342 RLBP1P12271 317 aa21.86■■□□□ 1.09
SPIDR-227ENST00000541342 AMPHP49418 695 aa21.86■■□□□ 1.09
SPIDR-227ENST00000541342 LTN1O94822 1766 aa21.86■■□□□ 1.09
SPIDR-227ENST00000541342 ARHGEF10O15013 1369 aa21.85■■□□□ 1.09
SPIDR-227ENST00000541342 CANXP27824 592 aaKnown RBP21.85■■□□□ 1.09
SPIDR-227ENST00000541342 PSME1Q06323 249 aa21.85■■□□□ 1.09
SPIDR-227ENST00000541342 FAM83GA6ND36 823 aa21.84■■□□□ 1.09
SPIDR-227ENST00000541342 PCDHB15Q9Y5E8 787 aa21.83■■□□□ 1.09
SPIDR-227ENST00000541342 KDM4FA0A1W2PPD8 638 aa21.83■■□□□ 1.09
SPIDR-227ENST00000541342 HOXC9P31274 260 aa21.83■■□□□ 1.09
SPIDR-227ENST00000541342 NFAT5O94916 1531 aa21.83■■□□□ 1.09
SPIDR-227ENST00000541342 KIF24Q5T7B8 1368 aa21.82■■□□□ 1.08
SPIDR-227ENST00000541342 C1orf167Q5SNV9 1468 aa21.82■■□□□ 1.08
SPIDR-227ENST00000541342 FOXO3O43524 673 aa21.82■■□□□ 1.08
SPIDR-227ENST00000541342 ZNF853P0CG23 659 aa21.82■■□□□ 1.08
SPIDR-227ENST00000541342 C19orf44Q9H6X5 657 aa21.82■■□□□ 1.08
SPIDR-227ENST00000541342 DCTN1Q14203 1278 aa21.81■■□□□ 1.08
SPIDR-227ENST00000541342 EYA1Q99502 592 aa21.81■■□□□ 1.08
SPIDR-227ENST00000541342 KDRP35968 1356 aa21.81■■□□□ 1.08
SPIDR-227ENST00000541342 TRPM3Q9HCF6 1732 aaPredicted RBP21.81■■□□□ 1.08
SPIDR-227ENST00000541342 XPCQ01831 940 aaPredicted RBP21.81■■□□□ 1.08
SPIDR-227ENST00000541342 SSH1Q8WYL5 1049 aa21.81■■□□□ 1.08
SPIDR-227ENST00000541342 IGSF1Q8N6C5 1336 aa21.81■■□□□ 1.08
SPIDR-227ENST00000541342 TMEM94Q12767 1356 aa21.8■■□□□ 1.08
SPIDR-227ENST00000541342 LMOD3Q0VAK6 560 aa21.8■■□□□ 1.08
SPIDR-227ENST00000541342 IFT57Q9NWB7 429 aa21.8■■□□□ 1.08
SPIDR-227ENST00000541342 CALD1Q05682 793 aaKnown RBP21.8■■□□□ 1.08
SPIDR-227ENST00000541342 ANO8Q9HCE9 1232 aaPredicted RBP21.79■■□□□ 1.08
SPIDR-227ENST00000541342 KIF1AQ12756 1690 aa21.79■■□□□ 1.08
SPIDR-227ENST00000541342 SMC4Q9NTJ3 1288 aa21.79■■□□□ 1.08
SPIDR-227ENST00000541342 MBIPQ9NS73 344 aa21.78■■□□□ 1.08
SPIDR-227ENST00000541342 LMTK3Q96Q04 1460 aa21.78■■□□□ 1.08
SPIDR-227ENST00000541342 GNAI1P63096 354 aa21.78■■□□□ 1.08
SPIDR-227ENST00000541342 STRCQ7RTU9 1775 aa21.77■■□□□ 1.08
SPIDR-227ENST00000541342 CFAP44Q96MT7 982 aa21.77■■□□□ 1.07
SPIDR-227ENST00000541342 RTL1A6NKG5 1358 aa21.76■■□□□ 1.07
SPIDR-227ENST00000541342 MST1RQ04912 1400 aa21.76■■□□□ 1.07
SPIDR-227ENST00000541342 ZKSCAN2Q63HK3 967 aa21.75■■□□□ 1.07
SPIDR-227ENST00000541342 TSPYL6Q8N831 410 aa21.75■■□□□ 1.07
SPIDR-227ENST00000541342 PHRF1Q9P1Y6 1649 aaKnown RBP21.74■■□□□ 1.07
SPIDR-227ENST00000541342 MTHFSDQ2M296 383 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 525 ms