RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KDM5BQ9UGL1 1544 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 BECN2A8MW95 431 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 FOSBP53539 338 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 RAPGEF6Q8TEU7 1601 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 ATF7IPQ6VMQ6 1270 aa17.04■□□□□ 0.32
USP3-204ENST00000540797 GOLGA6L19H0YKK7 550 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 BICDL1Q6ZP65 573 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 NOC3LQ8WTT2 800 aaKnown RBP17.03■□□□□ 0.32
USP3-204ENST00000540797 PTCD1O75127 700 aaKnown RBP17.03■□□□□ 0.32
USP3-204ENST00000540797 TPM2P07951 284 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 SART3Q15020 963 aaKnown RBP17.03■□□□□ 0.32
USP3-204ENST00000540797 IKQ13123 557 aaPredicted RBP17.03■□□□□ 0.32
USP3-204ENST00000540797 AMOTQ4VCS5 1084 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 CEP89Q96ST8 783 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 CADPS2Q86UW7 1296 aa17.03■□□□□ 0.32
USP3-204ENST00000540797 SLC3A2P08195 630 aaKnown RBP17.02■□□□□ 0.32
USP3-204ENST00000540797 SKOR2Q2VWA4 1001 aaPredicted RBP17.02■□□□□ 0.32
USP3-204ENST00000540797 MCM10Q7L590 875 aa17.02■□□□□ 0.32
USP3-204ENST00000540797 CCDC43Q96MW1 224 aaKnown RBP17.02■□□□□ 0.32
USP3-204ENST00000540797 MIS18AQ9NYP9 233 aa17.02■□□□□ 0.31
USP3-204ENST00000540797 EMILIN1Q9Y6C2 1016 aa17.02■□□□□ 0.31
USP3-204ENST00000540797 BICD2Q8TD16 824 aa17.02■□□□□ 0.31
USP3-204ENST00000540797 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.02■□□□□ 0.311e-6■■■□□ 15.4
USP3-204ENST00000540797 PDZRN3Q9UPQ7 1066 aa17.02■□□□□ 0.31
USP3-204ENST00000540797 TPM3P06753 285 aa17.01■□□□□ 0.31
USP3-204ENST00000540797 TSR1Q2NL82 804 aaKnown RBP17.01■□□□□ 0.31
USP3-204ENST00000540797 LRRCC1Q9C099 1032 aa17.01■□□□□ 0.31
USP3-204ENST00000540797 WDR7Q9Y4E6 1490 aa17.01■□□□□ 0.31
USP3-204ENST00000540797 PDE4CQ08493 712 aa17■□□□□ 0.31
USP3-204ENST00000540797 THUMPD2Q9BTF0 503 aaKnown RBP17■□□□□ 0.31
USP3-204ENST00000540797 XBP1P17861 261 aa16.99■□□□□ 0.31
USP3-204ENST00000540797 BRMS1Q9HCU9 246 aa16.99■□□□□ 0.31
USP3-204ENST00000540797 HOOK1Q9UJC3 728 aaKnown RBP16.99■□□□□ 0.31
USP3-204ENST00000540797 RRP12Q5JTH9 1297 aaKnown RBP16.99■□□□□ 0.31
USP3-204ENST00000540797 DUSP27Q5VZP5 1158 aa16.99■□□□□ 0.31
USP3-204ENST00000540797 SCAF11Q99590 1463 aaKnown RBP16.99■□□□□ 0.31
USP3-204ENST00000540797 SRGAP3O43295 1099 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.98■□□□□ 0.31
USP3-204ENST00000540797 CHMP5Q9NZZ3 219 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 A2MP01023 1474 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 DCTN1Q14203 1278 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 CEP126Q9P2H0 1117 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 MVPQ14764 893 aaKnown RBP16.98■□□□□ 0.31
USP3-204ENST00000540797 TAF7Q15545 349 aaPredicted RBP16.98■□□□□ 0.31
USP3-204ENST00000540797 MPRIPQ6WCQ1 1025 aa16.98■□□□□ 0.31
USP3-204ENST00000540797 TPM1P09493 284 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 ZNF518AQ6AHZ1 1483 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 EXOC5O00471 708 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 ZNF652Q9Y2D9 606 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 NUCB2P80303 420 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 CCDC184Q52MB2 194 aa16.97■□□□□ 0.31
USP3-204ENST00000540797 UHRF1BP1LA0JNW5 1464 aa16.96■□□□□ 0.31
USP3-204ENST00000540797 NUP153P49790 1475 aaKnown RBP16.96■□□□□ 0.31
USP3-204ENST00000540797 MSH6P52701 1360 aa16.96■□□□□ 0.31
USP3-204ENST00000540797 ZPR1O75312 459 aa16.96■□□□□ 0.31
USP3-204ENST00000540797 ACEP12821 1306 aa16.96■□□□□ 0.31
USP3-204ENST00000540797 IGHMBP2P38935 993 aaKnown RBP16.96■□□□□ 0.3
USP3-204ENST00000540797 CCDC85AQ96PX6 553 aaPredicted RBP16.96■□□□□ 0.3
USP3-204ENST00000540797 NACAP1Q9BZK3 213 aa16.95■□□□□ 0.3
USP3-204ENST00000540797 AACSQ86V21 672 aa16.95■□□□□ 0.3
USP3-204ENST00000540797 KDM4AO75164 1064 aa16.95■□□□□ 0.3
USP3-204ENST00000540797 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.95■□□□□ 0.3
USP3-204ENST00000540797 RBM5P52756 815 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP3-204ENST00000540797 ANKRD20A12PQ8NF67 263 aa16.94■□□□□ 0.3
USP3-204ENST00000540797 IFT57Q9NWB7 429 aa16.94■□□□□ 0.3
USP3-204ENST00000540797 FKBP4Q02790 459 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP3-204ENST00000540797 PCMTD1Q96MG8 357 aaPredicted RBP16.94■□□□□ 0.3
USP3-204ENST00000540797 ZSCAN25Q6NSZ9 544 aa16.93■□□□□ 0.3
USP3-204ENST00000540797 DUOX2Q9NRD8 1548 aa16.93■□□□□ 0.3
USP3-204ENST00000540797 CCDC73Q6ZRK6 1079 aa16.93■□□□□ 0.3
USP3-204ENST00000540797 SLFN5Q08AF3 891 aa16.93■□□□□ 0.3
USP3-204ENST00000540797 SYCP2Q9BX26 1530 aa16.93■□□□□ 0.3
USP3-204ENST00000540797 LARP1Q6PKG0 1096 aaKnown RBP16.93■□□□□ 0.3
USP3-204ENST00000540797 RPRD2Q5VT52 1461 aaKnown RBP16.93■□□□□ 0.3
USP3-204ENST00000540797 C11orf95C9JLR9 678 aaPredicted RBP16.92■□□□□ 0.3
USP3-204ENST00000540797 TTC21BQ7Z4L5 1316 aa16.92■□□□□ 0.3
USP3-204ENST00000540797 ATP2B2Q01814 1243 aa16.92■□□□□ 0.3
USP3-204ENST00000540797 NEK4P51957 841 aa16.92■□□□□ 0.3
USP3-204ENST00000540797 CCAR1Q8IX12 1150 aaKnown RBP16.92■□□□□ 0.3
USP3-204ENST00000540797 TOM1O60784 492 aa16.91■□□□□ 0.3
USP3-204ENST00000540797 MAP4K4O95819 1239 aaPredicted RBP16.91■□□□□ 0.3
USP3-204ENST00000540797 UBAP1LF5GYI3 381 aa16.91■□□□□ 0.3
USP3-204ENST00000540797 RPAP2Q8IXW5 612 aaPredicted RBP16.91■□□□□ 0.3
USP3-204ENST00000540797 ADAMTS12P58397 1594 aa16.91■□□□□ 0.3
USP3-204ENST00000540797 ABCC11Q96J66 1382 aa16.91■□□□□ 0.3
USP3-204ENST00000540797 CHRNA2Q15822 529 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 STK11IPQ8N1F8 1099 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 TRAPPC8Q9Y2L5 1435 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 IL1RAPL2Q9NP60 686 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 NSD2O96028 1365 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 MYD88Q99836 296 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 RAI14Q9P0K7 980 aa16.9■□□□□ 0.3
USP3-204ENST00000540797 ANKRD24Q8TF21 1146 aa16.89■□□□□ 0.29
USP3-204ENST00000540797 RIMS2Q9UQ26 1411 aa16.89■□□□□ 0.29
USP3-204ENST00000540797 IFNL2Q8IZJ0 200 aa16.89■□□□□ 0.29
USP3-204ENST00000540797 FMNL2Q96PY5 1086 aa16.89■□□□□ 0.29
USP3-204ENST00000540797 TMEM57Q8N5G2 664 aa16.89■□□□□ 0.29
USP3-204ENST00000540797 PRM3Q9NNZ6 103 aa16.88■□□□□ 0.29
USP3-204ENST00000540797 UGGT2Q9NYU1 1516 aa16.88■□□□□ 0.29
USP3-204ENST00000540797 METTL24Q5JXM2 366 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms