RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 EVC2Q86UK5 1308 aa15.7■□□□□ 0.1
SFSWAP-209ENST00000540469 ZBTB7BO15156 539 aaPredicted RBP15.7■□□□□ 0.1
SFSWAP-209ENST00000540469 MBD3O95983 291 aa15.7■□□□□ 0.1
SFSWAP-209ENST00000540469 SYAP1Q96A49 352 aaPredicted RBP15.7■□□□□ 0.1
SFSWAP-209ENST00000540469 TSPY26PQ9H489 355 aa15.7■□□□□ 0.1
SFSWAP-209ENST00000540469 DIAPH1O60610 1272 aaKnown RBP15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 MAPK8IP2Q13387 824 aaPredicted RBP15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 SHPRHQ149N8 1683 aa15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 PPIP5K1Q6PFW1 1433 aa15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 TSC1Q92574 1164 aa15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 CLTCL1P53675 1640 aa15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 CBX1P83916 185 aa15.69■□□□□ 0.1
SFSWAP-209ENST00000540469 JARID2Q92833 1246 aaPredicted RBP15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 THUMPD2Q9BTF0 503 aaKnown RBP15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 CCDC94Q9BW85 323 aaPredicted RBP15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 GSPT1P15170 499 aaKnown RBP15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 IL16Q14005 1332 aa15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 TRAPPC8Q9Y2L5 1435 aa15.68■□□□□ 0.1
SFSWAP-209ENST00000540469 ZNF830Q96NB3 372 aaPredicted RBP15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 C16orf71Q8IYS4 520 aaPredicted RBP15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 NSFL1CQ9UNZ2 370 aaKnown RBP15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 REC8O95072 547 aa15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 NCBP3Q53F19 620 aaKnown RBP15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 USP26Q9BXU7 913 aa15.67■□□□□ 0.1
SFSWAP-209ENST00000540469 NEK4P51957 841 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 PLPPR3Q6T4P5 718 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 STK26Q9P289 416 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.66■□□□□ 0.16e-7■□□□□ 10.6
SFSWAP-209ENST00000540469 NOS1P29475 1434 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 RAPGEF3O95398 923 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 PLEKHM2Q8IWE5 1019 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 PLEKHF1Q96S99 279 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 CD109Q6YHK3 1445 aa15.66■□□□□ 0.1
SFSWAP-209ENST00000540469 FAM177BA6PVY3 158 aa15.65■□□□□ 0.1
SFSWAP-209ENST00000540469 PRKAR2BP31323 418 aa15.65■□□□□ 0.1
SFSWAP-209ENST00000540469 TTC22Q5TAA0 569 aa15.65■□□□□ 0.1
SFSWAP-209ENST00000540469 ASXL2Q76L83 1435 aa15.65■□□□□ 0.1
SFSWAP-209ENST00000540469 SBNO2Q9Y2G9 1366 aa15.65■□□□□ 0.1
SFSWAP-209ENST00000540469 CFAP74Q9C0B2 1584 aa15.64■□□□□ 0.1
SFSWAP-209ENST00000540469 UGGT1Q9NYU2 1555 aa15.64■□□□□ 0.1
SFSWAP-209ENST00000540469 HMGN5P82970 282 aaKnown RBP15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 SIRT2Q8IXJ6 389 aa15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 PHF14O94880 888 aa15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 CYP2E1P05181 493 aaPredicted RBP15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 HMOX1P09601 288 aa15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 IGSF3O75054 1194 aa15.64■□□□□ 0.09
SFSWAP-209ENST00000540469 TSPYL6Q8N831 410 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 GDPD2Q9HCC8 539 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 SMARCA5O60264 1052 aaPredicted RBP15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 CHAF1AQ13111 956 aaPredicted RBP15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 MYRIPQ8NFW9 859 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 USP25Q9UHP3 1055 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 SHROOM2Q13796 1616 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 VGLL3A8MV65 326 aa15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 API5Q9BZZ5 524 aaKnown RBP15.63■□□□□ 0.09
SFSWAP-209ENST00000540469 MRPL50Q8N5N7 158 aaKnown RBP15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 OTUD7AQ8TE49 926 aaPredicted RBP15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 ABCA6Q8N139 1617 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 NSD2O96028 1365 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 ATAD2Q6PL18 1390 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 SDSP20132 328 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 PPP4R3BQ5MIZ7 849 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 C17orf53Q8N3J3 647 aaPredicted RBP15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 ZNF428Q96B54 188 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 ADGRL1O94910 1474 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 ANKRD36BQ8N2N9 1353 aa15.62■□□□□ 0.09
SFSWAP-209ENST00000540469 TWISTNBQ3B726 338 aaPredicted RBP15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 TTC12Q9H892 705 aaPredicted RBP15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 ZDHHC9Q9Y397 364 aa15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 KIF3AQ9Y496 699 aa15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 NOLC1Q14978 699 aaKnown RBP eCLIP15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 MAP3K4Q9Y6R4 1608 aa15.61■□□□□ 0.09
SFSWAP-209ENST00000540469 VAMP4O75379 141 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 ERC2O15083 957 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 PRIMPOLQ96LW4 560 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 TERF2IPQ9NYB0 399 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 GNAI1P63096 354 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 DMTNQ08495 405 aa15.6■□□□□ 0.09
SFSWAP-209ENST00000540469 SPDYE4A6NLX3 237 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 MCCP23508 829 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 TMX3Q96JJ7 454 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 C14orf93Q9H972 538 aaKnown RBP15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 PLCH2O75038 1416 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 PLCD3Q8N3E9 789 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 ARHGAP45Q92619 1136 aa15.59■□□□□ 0.09
SFSWAP-209ENST00000540469 MYOM2P54296 1465 aa15.58■□□□□ 0.08
SFSWAP-209ENST00000540469 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 FCHSD2O94868 740 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 GGT6Q6P531 493 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 DCTPP1Q9H773 170 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 MINK1Q8N4C8 1332 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 ADCY5O95622 1261 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 MLECQ14165 292 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 PDCL2Q8N4E4 241 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 KIAA1210Q9ULL0 1709 aa15.57■□□□□ 0.08
SFSWAP-209ENST00000540469 PIBF1Q8WXW3 757 aa15.56■□□□□ 0.08
SFSWAP-209ENST00000540469 ANO2Q9NQ90 1003 aa15.56■□□□□ 0.08
SFSWAP-209ENST00000540469 FBLN1P23142 703 aa15.56■□□□□ 0.08
SFSWAP-209ENST00000540469 HDGFL2Q7Z4V5 671 aaPredicted RBP15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms