RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 USP31Q70CQ4 1352 aa12.51□□□□□ -0.41
CLIP1-212ENST00000540304 C20orf194Q5TEA3 1177 aa12.51□□□□□ -0.41
CLIP1-212ENST00000540304 NEFMP07197 916 aa12.5□□□□□ -0.41
CLIP1-212ENST00000540304 PRKAR2BP31323 418 aa12.5□□□□□ -0.41
CLIP1-212ENST00000540304 TRIM35Q9UPQ4 493 aa12.5□□□□□ -0.41
CLIP1-212ENST00000540304 PIK3C2AO00443 1686 aa12.5□□□□□ -0.41
CLIP1-212ENST00000540304 VSIG10Q8N0Z9 540 aa12.5□□□□□ -0.41
CLIP1-212ENST00000540304 RIPK4P57078 832 aa12.49□□□□□ -0.41
CLIP1-212ENST00000540304 IL16Q14005 1332 aa12.49□□□□□ -0.41
CLIP1-212ENST00000540304 BCAR3O75815 825 aa12.49□□□□□ -0.41
CLIP1-212ENST00000540304 PEAK1Q9H792 1746 aa12.49□□□□□ -0.41
CLIP1-212ENST00000540304 NWD1Q149M9 1564 aa12.49□□□□□ -0.41
CLIP1-212ENST00000540304 ADGRL3Q9HAR2 1447 aa12.48□□□□□ -0.41
CLIP1-212ENST00000540304 USP54Q70EL1 1684 aa12.48□□□□□ -0.41
CLIP1-212ENST00000540304 HMOX1P09601 288 aa12.48□□□□□ -0.41
CLIP1-212ENST00000540304 FANCIQ9NVI1 1328 aa12.46□□□□□ -0.41
CLIP1-212ENST00000540304 MARF1Q9Y4F3 1742 aaKnown RBP12.46□□□□□ -0.41
CLIP1-212ENST00000540304 CT47B1P0C2W7 299 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-212ENST00000540304 RGPD1P0DJD0 1748 aa12.46□□□□□ -0.42
CLIP1-212ENST00000540304 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.42
CLIP1-212ENST00000540304 NFE2L2Q16236 605 aa12.46□□□□□ -0.42
CLIP1-212ENST00000540304 ADRA2BP18089 450 aa12.45□□□□□ -0.42
CLIP1-212ENST00000540304 DLG5Q8TDM6 1919 aa12.45□□□□□ -0.42
CLIP1-212ENST00000540304 EIF4A2Q14240 407 aaKnown RBP12.45□□□□□ -0.42
CLIP1-212ENST00000540304 PDE3AQ14432 1141 aa12.45□□□□□ -0.42
CLIP1-212ENST00000540304 SKAP1Q86WV1 359 aa12.45□□□□□ -0.42
CLIP1-212ENST00000540304 PHACTR3Q96KR7 559 aa12.45□□□□□ -0.42
CLIP1-212ENST00000540304 PHF8Q9UPP1 1060 aa12.44□□□□□ -0.42
CLIP1-212ENST00000540304 CANXP27824 592 aaKnown RBP12.44□□□□□ -0.42
CLIP1-212ENST00000540304 TSR2Q969E8 191 aaKnown RBP12.44□□□□□ -0.42
CLIP1-212ENST00000540304 SBNO1A3KN83 1393 aa12.43□□□□□ -0.42
CLIP1-212ENST00000540304 MAP3K19Q56UN5 1328 aa12.43□□□□□ -0.42
CLIP1-212ENST00000540304 FLT4P35916 1363 aa12.43□□□□□ -0.42
CLIP1-212ENST00000540304 RBM33Q96EV2 1170 aaKnown RBP12.43□□□□□ -0.42
CLIP1-212ENST00000540304 SOX12O15370 315 aa12.42□□□□□ -0.42
CLIP1-212ENST00000540304 CALD1Q05682 793 aaKnown RBP12.42□□□□□ -0.42
CLIP1-212ENST00000540304 GLIPR1L2Q4G1C9 344 aa12.42□□□□□ -0.42
CLIP1-212ENST00000540304 HSP90AB2PQ58FF8 381 aa12.42□□□□□ -0.42
CLIP1-212ENST00000540304 NLRP6P59044 892 aa12.42□□□□□ -0.42
CLIP1-212ENST00000540304 EXOSC9Q06265 439 aaKnown RBP12.42□□□□□ -0.42
CLIP1-212ENST00000540304 LMOD3Q0VAK6 560 aa12.42□□□□□ -0.42
CLIP1-212ENST00000540304 C14orf37Q86TY3 774 aa12.41□□□□□ -0.42
CLIP1-212ENST00000540304 TAF7LQ5H9L4 462 aa12.41□□□□□ -0.42
CLIP1-212ENST00000540304 FRAT1Q92837 279 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-212ENST00000540304 BCL2L13Q9BXK5 485 aa12.41□□□□□ -0.42
CLIP1-212ENST00000540304 ARHGEF10O15013 1369 aa12.41□□□□□ -0.42
CLIP1-212ENST00000540304 KIF24Q5T7B8 1368 aa12.41□□□□□ -0.42
CLIP1-212ENST00000540304 SULT6B1Q6IMI4 303 aa12.4□□□□□ -0.42
CLIP1-212ENST00000540304 ABTB2Q8N961 1025 aa12.4□□□□□ -0.42
CLIP1-212ENST00000540304 PAK3O75914 559 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-212ENST00000540304 AMPHP49418 695 aa12.39□□□□□ -0.43
CLIP1-212ENST00000540304 AEBP1Q8IUX7 1158 aa12.39□□□□□ -0.43
CLIP1-212ENST00000540304 KDM2BQ8NHM5 1336 aa12.39□□□□□ -0.43
CLIP1-212ENST00000540304 ESCO1Q5FWF5 840 aa12.39□□□□□ -0.43
CLIP1-212ENST00000540304 CENPQQ7L2Z9 268 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-212ENST00000540304 PANK1Q8TE04 598 aa12.38□□□□□ -0.43
CLIP1-212ENST00000540304 IFT57Q9NWB7 429 aa12.38□□□□□ -0.43
CLIP1-212ENST00000540304 GNAI1P63096 354 aa12.38□□□□□ -0.43
CLIP1-212ENST00000540304 PROSER2Q86WR7 435 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-212ENST00000540304 LTN1O94822 1766 aa12.38□□□□□ -0.43
CLIP1-212ENST00000540304 NUTM2GQ5VZR2 741 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 SMC4Q9NTJ3 1288 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 TNNQ9UQP3 1299 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 KIF1AQ12756 1690 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 PSME1Q06323 249 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 THUMPD2Q9BTF0 503 aaKnown RBP12.37□□□□□ -0.43
CLIP1-212ENST00000540304 COG6Q9Y2V7 657 aa12.37□□□□□ -0.43
CLIP1-212ENST00000540304 LAS1LQ9Y4W2 734 aaKnown RBP12.37□□□□□ -0.43
CLIP1-212ENST00000540304 KDRP35968 1356 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 TCERG1O14776 1098 aaKnown RBP12.36□□□□□ -0.43
CLIP1-212ENST00000540304 ZKSCAN2Q63HK3 967 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 RTL1A6NKG5 1358 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 ZNF853P0CG23 659 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 MS4A1P11836 297 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 SSH1Q8WYL5 1049 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 ZNF428Q96B54 188 aa12.36□□□□□ -0.43
CLIP1-212ENST00000540304 IGSF1Q8N6C5 1336 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 HOXC9P31274 260 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 NFAT5O94916 1531 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 STRCP1A6NGW2 1772 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 RLBP1P12271 317 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 ALDH1L2Q3SY69 923 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 CLUAP1Q96AJ1 413 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 CFAP44Q96MT7 982 aa12.35□□□□□ -0.43
CLIP1-212ENST00000540304 PHRF1Q9P1Y6 1649 aaKnown RBP12.34□□□□□ -0.43
CLIP1-212ENST00000540304 TRPM3Q9HCF6 1732 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-212ENST00000540304 FAM83GA6ND36 823 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 ORAI2Q96SN7 254 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 C19orf44Q9H6X5 657 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 MBIPQ9NS73 344 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 KIF16BQ96L93 1317 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 C1orf167Q5SNV9 1468 aa12.34□□□□□ -0.43
CLIP1-212ENST00000540304 EYA1Q99502 592 aa12.33□□□□□ -0.43
CLIP1-212ENST00000540304 NCOA3Q9Y6Q9 1424 aa12.33□□□□□ -0.44
CLIP1-212ENST00000540304 FTSJ3Q8IY81 847 aaKnown RBP12.33□□□□□ -0.44
CLIP1-212ENST00000540304 DZIP1LQ8IYY4 767 aaKnown RBP12.33□□□□□ -0.44
CLIP1-212ENST00000540304 PAXIP1Q6ZW49 1069 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-212ENST00000540304 KCNH5Q8NCM2 988 aa12.32□□□□□ -0.44
CLIP1-212ENST00000540304 DCCP43146 1447 aa12.32□□□□□ -0.44
CLIP1-212ENST00000540304 DCTN1Q14203 1278 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms