RNA–Protein interactions for RNA: ENST00000539827.5

HOMER3-204, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-204ENST00000539827 TMEM94Q12767 1356 aa29.2■■■□□ 2.27
HOMER3-204ENST00000539827 USP54Q70EL1 1684 aa29.2■■■□□ 2.26
HOMER3-204ENST00000539827 CCDC136Q96JN2 1154 aa29.2■■■□□ 2.26
HOMER3-204ENST00000539827 CRBNQ96SW2 442 aa29.2■■■□□ 2.26
HOMER3-204ENST00000539827 LMTK3Q96Q04 1460 aa29.2■■■□□ 2.26
HOMER3-204ENST00000539827 AEBP1Q8IUX7 1158 aa29.19■■■□□ 2.26
HOMER3-204ENST00000539827 SULT6B1Q6IMI4 303 aa29.19■■■□□ 2.26
HOMER3-204ENST00000539827 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.19■■■□□ 2.26
HOMER3-204ENST00000539827 FLT4P35916 1363 aa29.18■■■□□ 2.26
HOMER3-204ENST00000539827 FOXO3O43524 673 aa29.18■■■□□ 2.26
HOMER3-204ENST00000539827 XPCQ01831 940 aaPredicted RBP29.17■■■□□ 2.26
HOMER3-204ENST00000539827 TSR2Q969E8 191 aaKnown RBP29.17■■■□□ 2.26
HOMER3-204ENST00000539827 C1orf167Q5SNV9 1468 aa29.16■■■□□ 2.26
HOMER3-204ENST00000539827 IL16Q14005 1332 aa29.15■■■□□ 2.26
HOMER3-204ENST00000539827 FANCIQ9NVI1 1328 aa29.15■■■□□ 2.26
HOMER3-204ENST00000539827 ATF3P18847 181 aa29.13■■■□□ 2.25
HOMER3-204ENST00000539827 RGPD1P0DJD0 1748 aa29.13■■■□□ 2.25
HOMER3-204ENST00000539827 AEBP2Q6ZN18 517 aaPredicted RBP29.12■■■□□ 2.25
HOMER3-204ENST00000539827 STRCQ7RTU9 1775 aa29.12■■■□□ 2.25
HOMER3-204ENST00000539827 HOXC9P31274 260 aa29.11■■■□□ 2.25
HOMER3-204ENST00000539827 RARSP54136 660 aaKnown RBP29.11■■■□□ 2.25
HOMER3-204ENST00000539827 THUMPD2Q9BTF0 503 aaKnown RBP29.1■■■□□ 2.25
HOMER3-204ENST00000539827 EXOSC9Q06265 439 aaKnown RBP29.1■■■□□ 2.25
HOMER3-204ENST00000539827 KRT28Q7Z3Y7 464 aa29.09■■■□□ 2.25
HOMER3-204ENST00000539827 DLG5Q8TDM6 1919 aa29.08■■■□□ 2.25
HOMER3-204ENST00000539827 MST1RQ04912 1400 aa29.08■■■□□ 2.25
HOMER3-204ENST00000539827 NCOA3Q9Y6Q9 1424 aa29.08■■■□□ 2.25
HOMER3-204ENST00000539827 ARHGEF10O15013 1369 aa29.08■■■□□ 2.25
HOMER3-204ENST00000539827 KIF1AQ12756 1690 aa29.07■■■□□ 2.24
HOMER3-204ENST00000539827 LAS1LQ9Y4W2 734 aaKnown RBP29.07■■■□□ 2.24
HOMER3-204ENST00000539827 PLEKHG5O94827 1062 aa29.06■■■□□ 2.24
HOMER3-204ENST00000539827 LMOD2Q6P5Q4 547 aa29.06■■■□□ 2.24
HOMER3-204ENST00000539827 EYA1Q99502 592 aa29.06■■■□□ 2.24
HOMER3-204ENST00000539827 TSHZ2Q9NRE2 1034 aa29.06■■■□□ 2.24
HOMER3-204ENST00000539827 KIF24Q5T7B8 1368 aa29.06■■■□□ 2.24
HOMER3-204ENST00000539827 LTV1Q96GA3 475 aaPredicted RBP29.04■■■□□ 2.24
HOMER3-204ENST00000539827 BCL2L13Q9BXK5 485 aa29.04■■■□□ 2.24
HOMER3-204ENST00000539827 NFAT5O94916 1531 aa29.04■■■□□ 2.24
HOMER3-204ENST00000539827 LMOD3Q0VAK6 560 aa29.04■■■□□ 2.24
HOMER3-204ENST00000539827 DCCP43146 1447 aa29.04■■■□□ 2.24
HOMER3-204ENST00000539827 ZBTB7CA1YPR0 619 aa29.03■■■□□ 2.24
HOMER3-204ENST00000539827 FAM83GA6ND36 823 aa29.03■■■□□ 2.24
HOMER3-204ENST00000539827 CANXP27824 592 aaKnown RBP29.03■■■□□ 2.24
HOMER3-204ENST00000539827 TRPM3Q9HCF6 1732 aaPredicted RBP29.03■■■□□ 2.24
HOMER3-204ENST00000539827 LTN1O94822 1766 aa29.03■■■□□ 2.24
HOMER3-204ENST00000539827 FRAT1Q92837 279 aaPredicted RBP29.02■■■□□ 2.24
HOMER3-204ENST00000539827 KCNH5Q8NCM2 988 aa29.02■■■□□ 2.24
HOMER3-204ENST00000539827 IGSF1Q8N6C5 1336 aa29.02■■■□□ 2.24
HOMER3-204ENST00000539827 CALD1Q05682 793 aaKnown RBP29.01■■■□□ 2.23
HOMER3-204ENST00000539827 DCTN1Q14203 1278 aa29.01■■■□□ 2.23
HOMER3-204ENST00000539827 CADPS2Q86UW7 1296 aa29.01■■■□□ 2.23
HOMER3-204ENST00000539827 CT47B1P0C2W7 299 aaPredicted RBP29.01■■■□□ 2.23
HOMER3-204ENST00000539827 MSH6P52701 1360 aa29■■■□□ 2.23
HOMER3-204ENST00000539827 DDX17Q92841 729 aaKnown RBP29■■■□□ 2.23
HOMER3-204ENST00000539827 RTL1A6NKG5 1358 aa29■■■□□ 2.23
HOMER3-204ENST00000539827 XIRP1Q702N8 1843 aaKnown RBP28.99■■■□□ 2.23
HOMER3-204ENST00000539827 IP6K1Q92551 441 aa28.99■■■□□ 2.23
HOMER3-204ENST00000539827 ZNF335Q9H4Z2 1342 aaPredicted RBP28.98■■■□□ 2.23
HOMER3-204ENST00000539827 KDRP35968 1356 aa28.97■■■□□ 2.23
HOMER3-204ENST00000539827 IFT57Q9NWB7 429 aa28.97■■■□□ 2.23
HOMER3-204ENST00000539827 GCP02774 474 aa28.97■■■□□ 2.23
HOMER3-204ENST00000539827 GNAI1P63096 354 aa28.97■■■□□ 2.23
HOMER3-204ENST00000539827 PDE3AQ14432 1141 aa28.95■■■□□ 2.23
HOMER3-204ENST00000539827 PANK1Q8TE04 598 aa28.95■■■□□ 2.23
HOMER3-204ENST00000539827 SLIT3O75094 1523 aa28.95■■■□□ 2.23
HOMER3-204ENST00000539827 ZNF853P0CG23 659 aa28.95■■■□□ 2.22
HOMER3-204ENST00000539827 MTHFSDQ2M296 383 aaKnown RBP28.94■■■□□ 2.22
HOMER3-204ENST00000539827 TNNQ9UQP3 1299 aa28.94■■■□□ 2.22
HOMER3-204ENST00000539827 USP19O94966 1318 aa28.93■■■□□ 2.22
HOMER3-204ENST00000539827 MBIPQ9NS73 344 aa28.93■■■□□ 2.22
HOMER3-204ENST00000539827 SSH1Q8WYL5 1049 aa28.92■■■□□ 2.22
HOMER3-204ENST00000539827 SMC4Q9NTJ3 1288 aa28.92■■■□□ 2.22
HOMER3-204ENST00000539827 MCM10Q7L590 875 aa28.92■■■□□ 2.22
HOMER3-204ENST00000539827 USHBP1Q8N6Y0 703 aa28.92■■■□□ 2.22
HOMER3-204ENST00000539827 CFAP44Q96MT7 982 aa28.92■■■□□ 2.22
HOMER3-204ENST00000539827 ARHGEF25Q86VW2 580 aa28.9■■■□□ 2.22
HOMER3-204ENST00000539827 COG6Q9Y2V7 657 aa28.9■■■□□ 2.22
HOMER3-204ENST00000539827 ALS2Q96Q42 1657 aa28.9■■■□□ 2.22
HOMER3-204ENST00000539827 NPHP3Q7Z494 1330 aa28.87■■■□□ 2.21
HOMER3-204ENST00000539827 PHRF1Q9P1Y6 1649 aaKnown RBP28.87■■■□□ 2.21
HOMER3-204ENST00000539827 RLBP1P12271 317 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 GAS2L2Q8NHY3 880 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 NBPF6Q5VWK0 638 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 ZKSCAN2Q63HK3 967 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 TSPYL6Q8N831 410 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 CLUAP1Q96AJ1 413 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 NBPF4Q96M43 638 aa28.86■■■□□ 2.21
HOMER3-204ENST00000539827 MED1Q15648 1581 aaPredicted RBP28.84■■■□□ 2.21
HOMER3-204ENST00000539827 ELL2O00472 640 aaPredicted RBP28.84■■■□□ 2.21
HOMER3-204ENST00000539827 VAMP4O75379 141 aa28.84■■■□□ 2.21
HOMER3-204ENST00000539827 RTF1Q92541 710 aaKnown RBP28.83■■■□□ 2.21
HOMER3-204ENST00000539827 LRRC59Q96AG4 307 aaKnown RBP28.83■■■□□ 2.21
HOMER3-204ENST00000539827 BRINP3Q76B58 766 aa28.82■■■□□ 2.2
HOMER3-204ENST00000539827 RGPD2P0DJD1 1756 aa28.82■■■□□ 2.2
HOMER3-204ENST00000539827 ZC3H6P61129 1189 aaKnown RBP28.82■■■□□ 2.2
HOMER3-204ENST00000539827 ALDH1L2Q3SY69 923 aa28.82■■■□□ 2.2
HOMER3-204ENST00000539827 C8orf58Q8NAV2 365 aa28.82■■■□□ 2.2
HOMER3-204ENST00000539827 NOB1Q9ULX3 412 aaKnown RBP28.82■■■□□ 2.2
HOMER3-204ENST00000539827 CRB1P82279 1406 aa28.81■■■□□ 2.2
HOMER3-204ENST00000539827 PXDNQ92626 1479 aa28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms