RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 GOLGA6L3A6NEY3 463 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 SNX21Q969T3 373 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 ESF1Q9H501 851 aaKnown RBP14.5□□□□□ -0.09
SYNE1-234ENST00000536990 RRAGDQ9NQL2 400 aaPredicted RBP14.5□□□□□ -0.09
SYNE1-234ENST00000536990 EMILIN1Q9Y6C2 1016 aa14.5□□□□□ -0.09
SYNE1-234ENST00000536990 TRAK2O60296 914 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 TXNDC2Q86VQ3 553 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 CHD1LQ86WJ1 897 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 NME9Q86XW9 330 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 ZNF428Q96B54 188 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 PHACTR3Q96KR7 559 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 LNPKQ9C0E8 428 aa14.49□□□□□ -0.09
SYNE1-234ENST00000536990 CALD1Q05682 793 aaKnown RBP14.49□□□□□ -0.09
SYNE1-234ENST00000536990 METP08581 1390 aa14.48□□□□□ -0.09
SYNE1-234ENST00000536990 NUDT16Q96DE0 195 aaKnown RBP14.48□□□□□ -0.09
SYNE1-234ENST00000536990 PRKCSHP14314 528 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-234ENST00000536990 HDGFP51858 240 aaKnown RBP14.47□□□□□ -0.09
SYNE1-234ENST00000536990 BMP2KLQ5H9B9 411 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 GZF1Q9H116 711 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-234ENST00000536990 PIK3R4Q99570 1358 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 NRXN3Q9Y4C0 1643 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 IL13P35225 146 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 ZRANB1Q9UGI0 708 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 ZBTB7BO15156 539 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-234ENST00000536990 COG3Q96JB2 828 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 CCDC61Q9Y6R9 512 aa14.47□□□□□ -0.09
SYNE1-234ENST00000536990 GNAI1P63096 354 aa14.46□□□□□ -0.09
SYNE1-234ENST00000536990 PTCH1Q13635 1447 aa14.46□□□□□ -0.09
SYNE1-234ENST00000536990 THUMPD2Q9BTF0 503 aaKnown RBP14.46□□□□□ -0.1
SYNE1-234ENST00000536990 AATKQ6ZMQ8 1374 aa14.46□□□□□ -0.1
SYNE1-234ENST00000536990 VAMP4O75379 141 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 MRPL50Q8N5N7 158 aaKnown RBP14.45□□□□□ -0.1
SYNE1-234ENST00000536990 KIF2CQ99661 725 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 PANK2Q9BZ23 570 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 CDK12Q9NYV4 1490 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-234ENST00000536990 DDX11L8A8MPP1 907 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 ARHGAP45Q92619 1136 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 SIRT1Q96EB6 747 aa14.45□□□□□ -0.1
SYNE1-234ENST00000536990 IFT57Q9NWB7 429 aa14.44□□□□□ -0.1
SYNE1-234ENST00000536990 NCKAP5LQ9HCH0 1330 aa14.44□□□□□ -0.1
SYNE1-234ENST00000536990 ARXQ96QS3 562 aa14.44□□□□□ -0.1
SYNE1-234ENST00000536990 GCC1Q96CN9 775 aa14.44□□□□□ -0.1
SYNE1-234ENST00000536990 RRS1Q15050 365 aaKnown RBP14.43□□□□□ -0.1
SYNE1-234ENST00000536990 LMOD3Q0VAK6 560 aa14.43□□□□□ -0.1
SYNE1-234ENST00000536990 ANKRD45Q5TZF3 282 aa14.43□□□□□ -0.1
SYNE1-234ENST00000536990 TSPYL6Q8N831 410 aa14.43□□□□□ -0.1
SYNE1-234ENST00000536990 CHMP4BQ9H444 224 aaKnown RBP14.43□□□□□ -0.1
SYNE1-234ENST00000536990 CIZ1Q9ULV3 898 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-234ENST00000536990 SIRT2Q8IXJ6 389 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 CPS1P31327 1500 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 ZNF853P0CG23 659 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 MBIPQ9NS73 344 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 KNDC1Q76NI1 1749 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 MON2Q7Z3U7 1717 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 TECPR2O15040 1411 aa14.42□□□□□ -0.1
SYNE1-234ENST00000536990 ELL2O00472 640 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-234ENST00000536990 MRE11P49959 708 aa14.41□□□□□ -0.1
SYNE1-234ENST00000536990 TNPO1Q92973 898 aaKnown RBP14.41□□□□□ -0.1
SYNE1-234ENST00000536990 C1orf115Q9H7X2 142 aa14.41□□□□□ -0.1
SYNE1-234ENST00000536990 ABCC4O15439 1325 aa14.41□□□□□ -0.1
SYNE1-234ENST00000536990 RAB3GAP1Q15042 981 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 TBC1D9Q6ZT07 1266 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 DLG5Q8TDM6 1919 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 CFAP44Q96MT7 982 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 TNRQ92752 1358 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 EIF5BO60841 1220 aaKnown RBP14.4□□□□□ -0.1
SYNE1-234ENST00000536990 CD2BP2O95400 341 aaKnown RBP14.4□□□□□ -0.1
SYNE1-234ENST00000536990 TWISTNBQ3B726 338 aaPredicted RBP14.4□□□□□ -0.1
SYNE1-234ENST00000536990 ITSN1Q15811 1721 aa14.4□□□□□ -0.1
SYNE1-234ENST00000536990 HSP90AB1P08238 724 aaKnown RBP14.39□□□□□ -0.11
SYNE1-234ENST00000536990 AKAP12Q02952 1782 aa14.39□□□□□ -0.11
SYNE1-234ENST00000536990 PRR36Q9H6K5 1346 aa14.39□□□□□ -0.11
SYNE1-234ENST00000536990 ISY1Q9ULR0 285 aaKnown RBP14.39□□□□□ -0.11
SYNE1-234ENST00000536990 GRPEL1Q9HAV7 217 aa14.39□□□□□ -0.11
SYNE1-234ENST00000536990 C3P01024 1663 aa14.38□□□□□ -0.11
SYNE1-234ENST00000536990 TMEM2Q9UHN6 1383 aa14.37□□□□□ -0.11
SYNE1-234ENST00000536990 FAM83GA6ND36 823 aa14.37□□□□□ -0.11
SYNE1-234ENST00000536990 C8orf58Q8NAV2 365 aa14.37□□□□□ -0.11
SYNE1-234ENST00000536990 GBP4Q96PP9 640 aa14.36□□□□□ -0.11
SYNE1-234ENST00000536990 ROBO2Q9HCK4 1378 aa14.36□□□□□ -0.11
SYNE1-234ENST00000536990 K7ELQ4 463 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-234ENST00000536990 CLCN1P35523 988 aa14.36□□□□□ -0.11
SYNE1-234ENST00000536990 DCTN1Q14203 1278 aa14.36□□□□□ -0.11
SYNE1-234ENST00000536990 API5Q9BZZ5 524 aaKnown RBP14.36□□□□□ -0.11
SYNE1-234ENST00000536990 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
SYNE1-234ENST00000536990 TTC21BQ7Z4L5 1316 aa14.35□□□□□ -0.11
SYNE1-234ENST00000536990 KIF24Q5T7B8 1368 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 CDC45O75419 566 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 EIF4A2Q14240 407 aaKnown RBP14.34□□□□□ -0.11
SYNE1-234ENST00000536990 SULT6B1Q6IMI4 303 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 GAS2L3Q86XJ1 694 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 ACEP12821 1306 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 UBR1Q8IWV7 1749 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 GSPT1P15170 499 aaKnown RBP14.34□□□□□ -0.11
SYNE1-234ENST00000536990 KIF13AQ9H1H9 1805 aa14.34□□□□□ -0.11
SYNE1-234ENST00000536990 NUTM2FA1L443 756 aa14.33□□□□□ -0.11
SYNE1-234ENST00000536990 SKOR2Q2VWA4 1001 aaPredicted RBP14.33□□□□□ -0.11
SYNE1-234ENST00000536990 AEBP1Q8IUX7 1158 aa14.33□□□□□ -0.11
SYNE1-234ENST00000536990 GAS2L2Q8NHY3 880 aa14.33□□□□□ -0.11
SYNE1-234ENST00000536990 ADAMTS13Q76LX8 1427 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms