RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZBTB40Q9NUA8 1239 aa16.67■□□□□ 0.26
LDLR-203ENST00000535915 C3P01024 1663 aa16.67■□□□□ 0.26
LDLR-203ENST00000535915 AATKQ6ZMQ8 1374 aa16.67■□□□□ 0.26
LDLR-203ENST00000535915 RRS1Q15050 365 aaKnown RBP16.66■□□□□ 0.26
LDLR-203ENST00000535915 TECPR2O15040 1411 aa16.66■□□□□ 0.26
LDLR-203ENST00000535915 UBR1Q8IWV7 1749 aa16.66■□□□□ 0.26
LDLR-203ENST00000535915 ZNF428Q96B54 188 aa16.66■□□□□ 0.26
LDLR-203ENST00000535915 TNRQ92752 1358 aa16.66■□□□□ 0.26
LDLR-203ENST00000535915 SIRT1Q96EB6 747 aa16.66■□□□□ 0.26
LDLR-203ENST00000535915 GNAI1P63096 354 aa16.65■□□□□ 0.26
LDLR-203ENST00000535915 TBC1D32Q96NH3 1257 aa16.65■□□□□ 0.26
LDLR-203ENST00000535915 SMC5Q8IY18 1101 aa16.64■□□□□ 0.25
LDLR-203ENST00000535915 IFT57Q9NWB7 429 aa16.64■□□□□ 0.25
LDLR-203ENST00000535915 VAMP4O75379 141 aa16.63■□□□□ 0.25
LDLR-203ENST00000535915 ZNF692Q9BU19 519 aaPredicted RBP16.63■□□□□ 0.25
LDLR-203ENST00000535915 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.63■□□□□ 0.25
LDLR-203ENST00000535915 TMEM2Q9UHN6 1383 aa16.63■□□□□ 0.25
LDLR-203ENST00000535915 BRPF1P55201 1214 aaPredicted RBP16.63■□□□□ 0.25
LDLR-203ENST00000535915 PRR36Q9H6K5 1346 aa16.62■□□□□ 0.25
LDLR-203ENST00000535915 ELL2O00472 640 aaPredicted RBP16.62■□□□□ 0.25
LDLR-203ENST00000535915 TSPYL6Q8N831 410 aa16.62■□□□□ 0.25
LDLR-203ENST00000535915 FRAT2O75474 233 aaPredicted RBP16.62■□□□□ 0.25
LDLR-203ENST00000535915 MBIPQ9NS73 344 aa16.62■□□□□ 0.25
LDLR-203ENST00000535915 LMOD3Q0VAK6 560 aa16.61■□□□□ 0.25
LDLR-203ENST00000535915 ROBO2Q9HCK4 1378 aa16.61■□□□□ 0.25
LDLR-203ENST00000535915 GSE1Q14687 1217 aa16.61■□□□□ 0.25
LDLR-203ENST00000535915 MRPL50Q8N5N7 158 aaKnown RBP16.61■□□□□ 0.25
LDLR-203ENST00000535915 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.6■□□□□ 0.25
LDLR-203ENST00000535915 ZNF853P0CG23 659 aa16.6■□□□□ 0.25
LDLR-203ENST00000535915 CFAP44Q96MT7 982 aa16.59■□□□□ 0.25
LDLR-203ENST00000535915 SLKQ9H2G2 1235 aaPredicted RBP16.59■□□□□ 0.25
LDLR-203ENST00000535915 FAM83GA6ND36 823 aa16.59■□□□□ 0.25
LDLR-203ENST00000535915 TWISTNBQ3B726 338 aaPredicted RBP16.59■□□□□ 0.25
LDLR-203ENST00000535915 ARHGAP45Q92619 1136 aa16.59■□□□□ 0.25
LDLR-203ENST00000535915 PTCH1Q13635 1447 aa16.58■□□□□ 0.25
LDLR-203ENST00000535915 MFAP1P55081 439 aaKnown RBP16.58■□□□□ 0.25
LDLR-203ENST00000535915 ADAMTS13Q76LX8 1427 aa16.58■□□□□ 0.24
LDLR-203ENST00000535915 NUTM2FA1L443 756 aa16.58■□□□□ 0.24
LDLR-203ENST00000535915 NUCB1Q02818 461 aa16.58■□□□□ 0.24
LDLR-203ENST00000535915 UBE2Q2Q8WVN8 375 aa16.58■□□□□ 0.24
LDLR-203ENST00000535915 CHMP4BQ9H444 224 aaKnown RBP16.58■□□□□ 0.24
LDLR-203ENST00000535915 NRKQ7Z2Y5 1582 aa16.57■□□□□ 0.24
LDLR-203ENST00000535915 ZBTB7BO15156 539 aaPredicted RBP16.57■□□□□ 0.24
LDLR-203ENST00000535915 TOPAZ1Q8N9V7 1692 aa16.57■□□□□ 0.24
LDLR-203ENST00000535915 DCTN1Q14203 1278 aa16.57■□□□□ 0.24
LDLR-203ENST00000535915 LNPKQ9C0E8 428 aa16.57■□□□□ 0.24
LDLR-203ENST00000535915 C8orf58Q8NAV2 365 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 TBC1D2Q9BYX2 928 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 C22orf23Q9BZE7 217 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 ACEP12821 1306 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 TTC21BQ7Z4L5 1316 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 PIK3R4Q99570 1358 aa16.56■□□□□ 0.24
LDLR-203ENST00000535915 CHD1LQ86WJ1 897 aa16.55■□□□□ 0.24
LDLR-203ENST00000535915 C1orf115Q9H7X2 142 aa16.55■□□□□ 0.24
LDLR-203ENST00000535915 EIF4A2Q14240 407 aaKnown RBP16.55■□□□□ 0.24
LDLR-203ENST00000535915 LTKP29376 864 aa16.55■□□□□ 0.24
LDLR-203ENST00000535915 SULT6B1Q6IMI4 303 aa16.55■□□□□ 0.24
LDLR-203ENST00000535915 AEBP1Q8IUX7 1158 aa16.55■□□□□ 0.24
LDLR-203ENST00000535915 ABCC4O15439 1325 aa16.54■□□□□ 0.24
LDLR-203ENST00000535915 PLEKHG1Q9ULL1 1385 aa16.54■□□□□ 0.24
LDLR-203ENST00000535915 ANKRD45Q5TZF3 282 aa16.53■□□□□ 0.24
LDLR-203ENST00000535915 GCC1Q96CN9 775 aa16.53■□□□□ 0.24
LDLR-203ENST00000535915 NALCNQ8IZF0 1738 aa16.53■□□□□ 0.24
LDLR-203ENST00000535915 SLC26A8Q96RN1 970 aa16.52■□□□□ 0.24
LDLR-203ENST00000535915 OVOS2A0A0J9YW53 1432 aa16.52■□□□□ 0.24
LDLR-203ENST00000535915 USP6P35125 1406 aa16.52■□□□□ 0.24
LDLR-203ENST00000535915 OVOS2Q6IE36 1432 aa16.52■□□□□ 0.24
LDLR-203ENST00000535915 PLEKHG3A1L390 1219 aa16.52■□□□□ 0.23
LDLR-203ENST00000535915 API5Q9BZZ5 524 aaKnown RBP16.52■□□□□ 0.23
LDLR-203ENST00000535915 ANTXR1Q9H6X2 564 aa16.52■□□□□ 0.23
LDLR-203ENST00000535915 PEAK1Q9H792 1746 aa16.51■□□□□ 0.23
LDLR-203ENST00000535915 SOX12O15370 315 aa16.51■□□□□ 0.23
LDLR-203ENST00000535915 CEBPAP49715 358 aaPredicted RBP16.5■□□□□ 0.23
LDLR-203ENST00000535915 HSP90AB2PQ58FF8 381 aa16.5■□□□□ 0.23
LDLR-203ENST00000535915 SPRYD3Q8NCJ5 442 aa16.5■□□□□ 0.23
LDLR-203ENST00000535915 RGPD8O14715 1765 aaPredicted RBP16.5■□□□□ 0.23
LDLR-203ENST00000535915 EID1Q9Y6B2 187 aa16.49■□□□□ 0.23
LDLR-203ENST00000535915 FMN2Q9NZ56 1722 aa16.49■□□□□ 0.23
LDLR-203ENST00000535915 PTPRUQ92729 1446 aa16.49■□□□□ 0.23
LDLR-203ENST00000535915 RGPD1P0DJD0 1748 aa16.49■□□□□ 0.23
LDLR-203ENST00000535915 SIRT2Q8IXJ6 389 aa16.49■□□□□ 0.23
LDLR-203ENST00000535915 BMP2KLQ5H9B9 411 aa16.48■□□□□ 0.23
LDLR-203ENST00000535915 MCM10Q7L590 875 aa16.48■□□□□ 0.23
LDLR-203ENST00000535915 PLPPR3Q6T4P5 718 aa16.48■□□□□ 0.23
LDLR-203ENST00000535915 HAP1P54257 671 aaPredicted RBP16.47■□□□□ 0.23
LDLR-203ENST00000535915 AMOTL2Q9Y2J4 779 aa16.47■□□□□ 0.23
LDLR-203ENST00000535915 KRT24Q2M2I5 525 aa16.46■□□□□ 0.23
LDLR-203ENST00000535915 USP31Q70CQ4 1352 aa16.46■□□□□ 0.23
LDLR-203ENST00000535915 CHL1O00533 1208 aa16.45■□□□□ 0.22
LDLR-203ENST00000535915 KIF24Q5T7B8 1368 aa16.45■□□□□ 0.22
LDLR-203ENST00000535915 EIF5BO60841 1220 aaKnown RBP16.44■□□□□ 0.22
LDLR-203ENST00000535915 RIMS1Q86UR5 1692 aaKnown RBP16.44■□□□□ 0.22
LDLR-203ENST00000535915 SSH2Q76I76 1423 aa16.44■□□□□ 0.22
LDLR-203ENST00000535915 RBM25P49756 843 aaKnown RBP16.44■□□□□ 0.22
LDLR-203ENST00000535915 HSCBQ8IWL3 235 aa16.44■□□□□ 0.22
LDLR-203ENST00000535915 TTC21AQ8NDW8 1320 aa16.43■□□□□ 0.22
LDLR-203ENST00000535915 NGDNQ8NEJ9 315 aaKnown RBP16.43■□□□□ 0.22
LDLR-203ENST00000535915 MAP3K19Q56UN5 1328 aa16.43■□□□□ 0.22
LDLR-203ENST00000535915 KIAA0232Q92628 1395 aa16.43■□□□□ 0.22
LDLR-203ENST00000535915 INTS3Q68E01 1043 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms