RNA–Protein interactions for RNA: ENST00000528216.5

PGAP2-231, Transcript of post-GPI attachment to proteins 2, human

TSL 1 (best)

Gene PGAP2, Length 1,815 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PGAP2-231	ENST00000528216	FAM161A	Q3B820	660 aa		13.09	□□□□□ -0.31
PGAP2-231	ENST00000528216	CHMP4B	Q9H444	224 aa	Known RBP	13.09	□□□□□ -0.31
PGAP2-231	ENST00000528216	USP6	P35125	1406 aa		13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	STRCP1	A6NGW2	1772 aa		13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	OVOS2	A0A0J9YW53	1432 aa		13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	OVOS2	Q6IE36	1432 aa		13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	CHD2	O14647	1828 aa	Known RBP	13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	PRR36	Q9H6K5	1346 aa		13.08	□□□□□ -0.32
PGAP2-231	ENST00000528216	USP31	Q70CQ4	1352 aa		13.07	□□□□□ -0.32
PGAP2-231	ENST00000528216	PRKAR2B	P31323	418 aa		13.07	□□□□□ -0.32
PGAP2-231	ENST00000528216	FRAT1	Q92837	279 aa	Predicted RBP	13.07	□□□□□ -0.32
PGAP2-231	ENST00000528216	TTC21B	Q7Z4L5	1316 aa		13.07	□□□□□ -0.32
PGAP2-231	ENST00000528216	HAP1	P54257	671 aa	Predicted RBP	13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	MVP	Q14764	893 aa	Known RBP	13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	NME9	Q86XW9	330 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	DZIP1L	Q8IYY4	767 aa	Known RBP	13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	RWDD1	Q9H446	243 aa	Predicted RBP	13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	COG6	Q9Y2V7	657 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	VIRMA	Q69YN4	1812 aa	Known RBP	13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	SSH2	Q76I76	1423 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	GNAI1	P63096	354 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	PANK1	Q8TE04	598 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	FBXO41	Q8TF61	875 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	IFT57	Q9NWB7	429 aa		13.06	□□□□□ -0.32
PGAP2-231	ENST00000528216	NWD1	Q149M9	1564 aa		13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	EXOSC9	Q06265	439 aa	Known RBP	13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	FTSJ3	Q8IY81	847 aa	Known RBP	13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	SMC4	Q9NTJ3	1288 aa		13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	DDX19B	Q9UMR2	479 aa		13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	KIF24	Q5T7B8	1368 aa		13.05	□□□□□ -0.32
PGAP2-231	ENST00000528216	USP54	Q70EL1	1684 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	ACE	P12821	1306 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	UBAP1L	F5GYI3	381 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	ATF7IP	Q6VMQ6	1270 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	ARHGAP45	Q92619	1136 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	C19orf44	Q9H6X5	657 aa		13.04	□□□□□ -0.32
PGAP2-231	ENST00000528216	PPM1G	O15355	546 aa	Predicted RBP	13.03	□□□□□ -0.32
PGAP2-231	ENST00000528216	EMILIN1	Q9Y6C2	1016 aa		13.03	□□□□□ -0.32
PGAP2-231	ENST00000528216	ATF3	P18847	181 aa		13.02	□□□□□ -0.32
PGAP2-231	ENST00000528216	MSH6	P52701	1360 aa		13.02	□□□□□ -0.32
PGAP2-231	ENST00000528216	TOM1	O60784	492 aa		13.02	□□□□□ -0.33
PGAP2-231	ENST00000528216	ZNF853	P0CG23	659 aa		13.02	□□□□□ -0.33
PGAP2-231	ENST00000528216	SSH1	Q8WYL5	1049 aa		13.02	□□□□□ -0.33
PGAP2-231	ENST00000528216	TSR2	Q969E8	191 aa	Known RBP	13.02	□□□□□ -0.33
PGAP2-231	ENST00000528216	RGPD1	P0DJD0	1748 aa		13.01	□□□□□ -0.33
PGAP2-231	ENST00000528216	HDAC1	Q13547	482 aa	Predicted RBP	13.01	□□□□□ -0.33
PGAP2-231	ENST00000528216	FMN2	Q9NZ56	1722 aa		13.01	□□□□□ -0.33
PGAP2-231	ENST00000528216	DLG5	Q8TDM6	1919 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	NCOA3	Q9Y6Q9	1424 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	ARHGEF10	O15013	1369 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	IGHD	P01880	384 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	PIP4K2B	P78356	416 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	CFAP44	Q96MT7	982 aa		13	□□□□□ -0.33
PGAP2-231	ENST00000528216	RLBP1	P12271	317 aa		12.99	□□□□□ -0.33
PGAP2-231	ENST00000528216	TRIM27	P14373	513 aa		12.99	□□□□□ -0.33
PGAP2-231	ENST00000528216	C8orf34	Q49A92	452 aa		12.99	□□□□□ -0.33
PGAP2-231	ENST00000528216	CADPS2	Q86UW7	1296 aa		12.99	□□□□□ -0.33
PGAP2-231	ENST00000528216	SBNO1	A3KN83	1393 aa		12.98	□□□□□ -0.33
PGAP2-231	ENST00000528216	NUTM2F	A1L443	756 aa		12.98	□□□□□ -0.33
PGAP2-231	ENST00000528216	FLT4	P35916	1363 aa		12.98	□□□□□ -0.33
PGAP2-231	ENST00000528216	HMOX1	P09601	288 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	PHACTR3	Q96KR7	559 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	BCL2L13	Q9BXK5	485 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	SLAIN2	Q9P270	581 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	PCDHB15	Q9Y5E8	787 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	EIF4A2	Q14240	407 aa	Known RBP	12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	ZRANB1	Q9UGI0	708 aa		12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	NOB1	Q9ULX3	412 aa	Known RBP	12.97	□□□□□ -0.33
PGAP2-231	ENST00000528216	ADGRL3	Q9HAR2	1447 aa		12.96	□□□□□ -0.33
PGAP2-231	ENST00000528216	RGS3	P49796	1198 aa		12.96	□□□□□ -0.33
PGAP2-231	ENST00000528216	RRS1	Q15050	365 aa	Known RBP	12.96	□□□□□ -0.33
PGAP2-231	ENST00000528216	NGDN	Q8NEJ9	315 aa	Known RBP	12.96	□□□□□ -0.33
PGAP2-231	ENST00000528216	XIRP1	Q702N8	1843 aa	Known RBP	12.96	□□□□□ -0.33
PGAP2-231	ENST00000528216	KIAA0232	Q92628	1395 aa		12.96	□□□□□ -0.34
PGAP2-231	ENST00000528216	PEAK1	Q9H792	1746 aa		12.96	□□□□□ -0.34
PGAP2-231	ENST00000528216	VAMP4	O75379	141 aa		12.95	□□□□□ -0.34
PGAP2-231	ENST00000528216	KDR	P35968	1356 aa		12.95	□□□□□ -0.34
PGAP2-231	ENST00000528216	ITPRIP	Q8IWB1	547 aa		12.95	□□□□□ -0.34
PGAP2-231	ENST00000528216	API5	Q9BZZ5	524 aa	Known RBP	12.95	□□□□□ -0.34
PGAP2-231	ENST00000528216	ZBTB40	Q9NUA8	1239 aa		12.95	□□□□□ -0.34
PGAP2-231	ENST00000528216	PIK3C2A	O00443	1686 aa		12.94	□□□□□ -0.34
PGAP2-231	ENST00000528216	HTATSF1	O43719	755 aa	Known RBP	12.94	□□□□□ -0.34
PGAP2-231	ENST00000528216	NPM2	Q86SE8	214 aa	Known RBP	12.94	□□□□□ -0.34
PGAP2-231	ENST00000528216	RTL1	A6NKG5	1358 aa		12.94	□□□□□ -0.34
PGAP2-231	ENST00000528216	FBLN1	P23142	703 aa		12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	SMC5	Q8IY18	1101 aa		12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	MRPL50	Q8N5N7	158 aa	Known RBP	12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	MBIP	Q9NS73	344 aa		12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	DAXX	Q9UER7	740 aa	Predicted RBP	12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	RGPD8	O14715	1765 aa	Predicted RBP	12.93	□□□□□ -0.34
PGAP2-231	ENST00000528216	PAK3	O75914	559 aa	Predicted RBP	12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	TWISTNB	Q3B726	338 aa	Predicted RBP	12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	SULT6B1	Q6IMI4	303 aa		12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	UPF2	Q9HAU5	1272 aa	Known RBP	12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	USP35	Q9P2H5	1018 aa		12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	PDZRN3	Q9UPQ7	1066 aa		12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	SOS1	Q07889	1333 aa	Predicted RBP	12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	ESCO1	Q5FWF5	840 aa		12.92	□□□□□ -0.34
PGAP2-231	ENST00000528216	TMEM57	Q8N5G2	664 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms