RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 HFM1A2PYH4 1435 aa12.47□□□□□ -0.41
USP48-212ENST00000527823 NRAPQ86VF7 1730 aa12.47□□□□□ -0.41
USP48-212ENST00000527823 IFT172Q9UG01 1749 aa12.47□□□□□ -0.41
USP48-212ENST00000527823 E2F4Q16254 413 aa12.46□□□□□ -0.41
USP48-212ENST00000527823 ZNF326Q5BKZ1 582 aaKnown RBP12.46□□□□□ -0.41
USP48-212ENST00000527823 KCNV2Q8TDN2 545 aa12.46□□□□□ -0.41
USP48-212ENST00000527823 FOXK1P85037 733 aa12.45□□□□□ -0.42
USP48-212ENST00000527823 CCDC125Q86Z20 511 aa12.45□□□□□ -0.42
USP48-212ENST00000527823 TNS1Q9HBL0 1735 aaKnown RBP12.45□□□□□ -0.42
USP48-212ENST00000527823 GJD4Q96KN9 370 aaPredicted RBP12.44□□□□□ -0.42
USP48-212ENST00000527823 RGPD8O14715 1765 aaPredicted RBP12.43□□□□□ -0.42
USP48-212ENST00000527823 NPHP3Q7Z494 1330 aa12.43□□□□□ -0.42
USP48-212ENST00000527823 RGPD1P0DJD0 1748 aa12.43□□□□□ -0.42
USP48-212ENST00000527823 DEFB132Q7Z7B7 95 aa12.43□□□□□ -0.42
USP48-212ENST00000527823 PLPP6Q8IY26 295 aa12.43□□□□□ -0.42
USP48-212ENST00000527823 NAIPQ13075 1403 aa12.42□□□□□ -0.42
USP48-212ENST00000527823 TECPR2O15040 1411 aa12.41□□□□□ -0.42
USP48-212ENST00000527823 XPCQ01831 940 aaPredicted RBP12.41□□□□□ -0.42
USP48-212ENST00000527823 SCUBE2Q9NQ36 999 aa12.39□□□□□ -0.43
USP48-212ENST00000527823 CRYBG1Q9Y4K1 1723 aa12.39□□□□□ -0.43
USP48-212ENST00000527823 CCDC144AA2RUR9 1427 aa12.38□□□□□ -0.43
USP48-212ENST00000527823 CAMK2BQ13554 666 aa12.38□□□□□ -0.43
USP48-212ENST00000527823 TNS3Q68CZ2 1445 aa12.37□□□□□ -0.43
USP48-212ENST00000527823 TRPM3Q9HCF6 1732 aaPredicted RBP12.37□□□□□ -0.43
USP48-212ENST00000527823 ESCO1Q5FWF5 840 aa12.37□□□□□ -0.43
USP48-212ENST00000527823 MAMSTRQ6ZN01 415 aa12.37□□□□□ -0.43
USP48-212ENST00000527823 UNC5CLQ8IV45 518 aa12.37□□□□□ -0.43
USP48-212ENST00000527823 THSD7AQ9UPZ6 1657 aa12.37□□□□□ -0.43
USP48-212ENST00000527823 FOXO3O43524 673 aa12.36□□□□□ -0.43
USP48-212ENST00000527823 SLAIN1Q8ND83 568 aa12.36□□□□□ -0.43
USP48-212ENST00000527823 SPATA31A3Q5VYP0 1347 aa12.36□□□□□ -0.43
USP48-212ENST00000527823 LRPPRCP42704 1394 aaKnown RBP12.35□□□□□ -0.43
USP48-212ENST00000527823 PLEKHH1Q9ULM0 1364 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 PSDA5PKW4 1024 aaPredicted RBP12.35□□□□□ -0.43
USP48-212ENST00000527823 NBR1Q14596 966 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 EMILIN3Q9NT22 766 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 RRBP1Q9P2E9 1410 aaKnown RBP12.35□□□□□ -0.43
USP48-212ENST00000527823 RREB1Q92766 1687 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 ALS2Q96Q42 1657 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 ADGRB2O60241 1585 aa12.35□□□□□ -0.43
USP48-212ENST00000527823 ITGAEP38570 1179 aa12.34□□□□□ -0.43
USP48-212ENST00000527823 SEPT12Q8IYM1 358 aa12.34□□□□□ -0.43
USP48-212ENST00000527823 HRCP23327 699 aa12.33□□□□□ -0.44
USP48-212ENST00000527823 LHX8Q68G74 356 aa12.33□□□□□ -0.44
USP48-212ENST00000527823 ARHGEF1Q92888 912 aaKnown RBP12.33□□□□□ -0.44
USP48-212ENST00000527823 NUP188Q5SRE5 1749 aa12.33□□□□□ -0.44
USP48-212ENST00000527823 NRXN1Q9ULB1 1477 aa12.33□□□□□ -0.44
USP48-212ENST00000527823 COL14A1Q05707 1796 aaKnown RBP12.33□□□□□ -0.44
USP48-212ENST00000527823 DISP2A7MBM2 1401 aa12.32□□□□□ -0.44
USP48-212ENST00000527823 NUTM2FA1L443 756 aa12.32□□□□□ -0.44
USP48-212ENST00000527823 VPS72Q15906 364 aa12.32□□□□□ -0.44
USP48-212ENST00000527823 PIK3C2GO75747 1445 aa12.31□□□□□ -0.44
USP48-212ENST00000527823 SF3B2Q13435 895 aaKnown RBP12.31□□□□□ -0.44
USP48-212ENST00000527823 KRT27Q7Z3Y8 459 aa12.3□□□□□ -0.44
USP48-212ENST00000527823 OTUD5Q96G74 571 aa12.3□□□□□ -0.44
USP48-212ENST00000527823 RPGRIP1LQ68CZ1 1315 aa12.3□□□□□ -0.44
USP48-212ENST00000527823 DPYSL4O14531 572 aa12.29□□□□□ -0.44
USP48-212ENST00000527823 ONECUT3O60422 494 aaPredicted RBP12.29□□□□□ -0.44
USP48-212ENST00000527823 SPATA31E1Q6ZUB1 1445 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 BAG6P46379 1132 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 WAPLQ7Z5K2 1190 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 CABLES1Q8TDN4 633 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 PHRF1Q9P1Y6 1649 aaKnown RBP12.28□□□□□ -0.44
USP48-212ENST00000527823 ADGRF5Q8IZF2 1346 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 ABCC11Q96J66 1382 aa12.28□□□□□ -0.44
USP48-212ENST00000527823 YTHDC2Q9H6S0 1430 aaKnown RBP12.28□□□□□ -0.44
USP48-212ENST00000527823 SBNO1A3KN83 1393 aa12.27□□□□□ -0.45
USP48-212ENST00000527823 ARIH1Q9Y4X5 557 aaPredicted RBP12.26□□□□□ -0.45
USP48-212ENST00000527823 ARHGEF10O15013 1369 aa12.26□□□□□ -0.45
USP48-212ENST00000527823 KRT28Q7Z3Y7 464 aa12.25□□□□□ -0.45
USP48-212ENST00000527823 STK26Q9P289 416 aa12.25□□□□□ -0.45
USP48-212ENST00000527823 CCDC9Q9Y3X0 531 aaKnown RBP12.25□□□□□ -0.45
USP48-212ENST00000527823 CAMTA1Q9Y6Y1 1673 aa12.25□□□□□ -0.45
USP48-212ENST00000527823 MAP3K9P80192 1104 aa12.24□□□□□ -0.45
USP48-212ENST00000527823 EN1Q05925 392 aaPredicted RBP12.24□□□□□ -0.45
USP48-212ENST00000527823 R3HDM1Q15032 1099 aaKnown RBP12.24□□□□□ -0.45
USP48-212ENST00000527823 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
USP48-212ENST00000527823 OXER1Q8TDS5 423 aa12.24□□□□□ -0.45
USP48-212ENST00000527823 A0A0G2JS52 829 aa12.23□□□□□ -0.45
USP48-212ENST00000527823 SEMA3EO15041 775 aa12.23□□□□□ -0.45
USP48-212ENST00000527823 MYT1Q01538 1121 aa12.23□□□□□ -0.45
USP48-212ENST00000527823 DLC1Q96QB1 1528 aa12.22□□□□□ -0.45
USP48-212ENST00000527823 ANKARQ7Z5J8 1434 aa12.22□□□□□ -0.45
USP48-212ENST00000527823 ANKRD30BQ9BXX2 1392 aa12.22□□□□□ -0.45
USP48-212ENST00000527823 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
USP48-212ENST00000527823 ITSN1Q15811 1721 aa12.22□□□□□ -0.45
USP48-212ENST00000527823 FAM83GA6ND36 823 aa12.21□□□□□ -0.45
USP48-212ENST00000527823 TMEM132EQ6IEE7 984 aa12.21□□□□□ -0.45
USP48-212ENST00000527823 RGPD3A6NKT7 1758 aaPredicted RBP12.2□□□□□ -0.46
USP48-212ENST00000527823 RGPD4Q7Z3J3 1758 aa12.2□□□□□ -0.46
USP48-212ENST00000527823 SLC34A2O95436 690 aa12.2□□□□□ -0.46
USP48-212ENST00000527823 HOXB3P14651 431 aaPredicted RBP12.2□□□□□ -0.46
USP48-212ENST00000527823 PTCD2Q8WV60 388 aaKnown RBP12.2□□□□□ -0.46
USP48-212ENST00000527823 ADGRB1O14514 1584 aa12.2□□□□□ -0.46
USP48-212ENST00000527823 TULP4Q9NRJ4 1543 aa12.2□□□□□ -0.46
USP48-212ENST00000527823 CASZ1Q86V15 1759 aa12.2□□□□□ -0.46
USP48-212ENST00000527823 UTRNP46939 3433 aa12.19□□□□□ -0.46
USP48-212ENST00000527823 NRKQ7Z2Y5 1582 aa12.19□□□□□ -0.46
USP48-212ENST00000527823 BTG4Q9NY30 223 aa12.19□□□□□ -0.46
USP48-212ENST00000527823 SPATA31A5Q5VU36 1347 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms