RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ARHGAP45Q92619 1136 aa26.88■■□□□ 1.89
VPS28-205ENST00000526204 CPS1P31327 1500 aa26.87■■□□□ 1.89
VPS28-205ENST00000526204 TNRQ92752 1358 aa26.86■■□□□ 1.89
VPS28-205ENST00000526204 DNAJC5Q9H3Z4 198 aa26.85■■□□□ 1.89
VPS28-205ENST00000526204 VAMP4O75379 141 aa26.84■■□□□ 1.89
VPS28-205ENST00000526204 ZNF853P0CG23 659 aa26.84■■□□□ 1.89
VPS28-205ENST00000526204 GSE1Q14687 1217 aa26.84■■□□□ 1.89
VPS28-205ENST00000526204 MON2Q7Z3U7 1717 aa26.83■■□□□ 1.89
VPS28-205ENST00000526204 TMEM2Q9UHN6 1383 aa26.83■■□□□ 1.89
VPS28-205ENST00000526204 ZRANB1Q9UGI0 708 aa26.82■■□□□ 1.88
VPS28-205ENST00000526204 MRPL50Q8N5N7 158 aaKnown RBP26.81■■□□□ 1.88
VPS28-205ENST00000526204 CFAP44Q96MT7 982 aa26.8■■□□□ 1.88
VPS28-205ENST00000526204 PIK3R4Q99570 1358 aa26.8■■□□□ 1.88
VPS28-205ENST00000526204 NUCB1Q02818 461 aa26.8■■□□□ 1.88
VPS28-205ENST00000526204 THUMPD2Q9BTF0 503 aaKnown RBP26.8■■□□□ 1.88
VPS28-205ENST00000526204 PTCH1Q13635 1447 aa26.79■■□□□ 1.88
VPS28-205ENST00000526204 MBIPQ9NS73 344 aa26.79■■□□□ 1.88
VPS28-205ENST00000526204 NCKAP5LQ9HCH0 1330 aa26.78■■□□□ 1.88
VPS28-205ENST00000526204 FRAT2O75474 233 aaPredicted RBP26.78■■□□□ 1.88
VPS28-205ENST00000526204 RRS1Q15050 365 aaKnown RBP26.78■■□□□ 1.88
VPS28-205ENST00000526204 C3P01024 1663 aa26.78■■□□□ 1.88
VPS28-205ENST00000526204 AKAP12Q02952 1782 aa26.77■■□□□ 1.88
VPS28-205ENST00000526204 ZBTB7BO15156 539 aaPredicted RBP26.77■■□□□ 1.88
VPS28-205ENST00000526204 PRR36Q9H6K5 1346 aa26.76■■□□□ 1.87
VPS28-205ENST00000526204 TSPYL6Q8N831 410 aa26.75■■□□□ 1.87
VPS28-205ENST00000526204 ITSN1Q15811 1721 aa26.75■■□□□ 1.87
VPS28-205ENST00000526204 ROBO2Q9HCK4 1378 aa26.75■■□□□ 1.87
VPS28-205ENST00000526204 TWISTNBQ3B726 338 aaPredicted RBP26.75■■□□□ 1.87
VPS28-205ENST00000526204 GCC1Q96CN9 775 aa26.74■■□□□ 1.87
VPS28-205ENST00000526204 C22orf23Q9BZE7 217 aa26.74■■□□□ 1.87
VPS28-205ENST00000526204 CHD1LQ86WJ1 897 aa26.73■■□□□ 1.87
VPS28-205ENST00000526204 TBC1D2Q9BYX2 928 aa26.73■■□□□ 1.87
VPS28-205ENST00000526204 ADAMTS13Q76LX8 1427 aa26.73■■□□□ 1.87
VPS28-205ENST00000526204 UBR1Q8IWV7 1749 aa26.73■■□□□ 1.87
VPS28-205ENST00000526204 ABCC4O15439 1325 aa26.73■■□□□ 1.87
VPS28-205ENST00000526204 PLEKHG3A1L390 1219 aa26.71■■□□□ 1.87
VPS28-205ENST00000526204 API5Q9BZZ5 524 aaKnown RBP26.71■■□□□ 1.87
VPS28-205ENST00000526204 PLEKHG1Q9ULL1 1385 aa26.71■■□□□ 1.87
VPS28-205ENST00000526204 TTC21BQ7Z4L5 1316 aa26.71■■□□□ 1.87
VPS28-205ENST00000526204 ANTXR1Q9H6X2 564 aa26.71■■□□□ 1.87
VPS28-205ENST00000526204 HAP1P54257 671 aaPredicted RBP26.69■■□□□ 1.86
VPS28-205ENST00000526204 MFAP1P55081 439 aaKnown RBP26.69■■□□□ 1.86
VPS28-205ENST00000526204 NRKQ7Z2Y5 1582 aa26.69■■□□□ 1.86
VPS28-205ENST00000526204 ELL2O00472 640 aaPredicted RBP26.68■■□□□ 1.86
VPS28-205ENST00000526204 SLKQ9H2G2 1235 aaPredicted RBP26.68■■□□□ 1.86
VPS28-205ENST00000526204 KIF24Q5T7B8 1368 aa26.68■■□□□ 1.86
VPS28-205ENST00000526204 C8orf58Q8NAV2 365 aa26.68■■□□□ 1.86
VPS28-205ENST00000526204 LNPKQ9C0E8 428 aa26.68■■□□□ 1.86
VPS28-205ENST00000526204 ACEP12821 1306 aa26.67■■□□□ 1.86
VPS28-205ENST00000526204 EIF4A2Q14240 407 aaKnown RBP26.67■■□□□ 1.86
VPS28-205ENST00000526204 OVOS2A0A0J9YW53 1432 aa26.66■■□□□ 1.86
VPS28-205ENST00000526204 OVOS2Q6IE36 1432 aa26.66■■□□□ 1.86
VPS28-205ENST00000526204 FAM83GA6ND36 823 aa26.65■■□□□ 1.86
VPS28-205ENST00000526204 BMP2KLQ5H9B9 411 aa26.65■■□□□ 1.86
VPS28-205ENST00000526204 SULT6B1Q6IMI4 303 aa26.64■■□□□ 1.86
VPS28-205ENST00000526204 USP6P35125 1406 aa26.64■■□□□ 1.85
VPS28-205ENST00000526204 DLG5Q8TDM6 1919 aa26.64■■□□□ 1.85
VPS28-205ENST00000526204 TOPAZ1Q8N9V7 1692 aa26.63■■□□□ 1.85
VPS28-205ENST00000526204 LTKP29376 864 aa26.63■■□□□ 1.85
VPS28-205ENST00000526204 ANKRD45Q5TZF3 282 aa26.63■■□□□ 1.85
VPS28-205ENST00000526204 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.63■■□□□ 1.85
VPS28-205ENST00000526204 USP31Q70CQ4 1352 aa26.61■■□□□ 1.85
VPS28-205ENST00000526204 DCTN1Q14203 1278 aa26.61■■□□□ 1.85
VPS28-205ENST00000526204 EID1Q9Y6B2 187 aa26.61■■□□□ 1.85
VPS28-205ENST00000526204 RBM25P49756 843 aaKnown RBP26.6■■□□□ 1.85
VPS28-205ENST00000526204 AEBP1Q8IUX7 1158 aa26.6■■□□□ 1.85
VPS28-205ENST00000526204 CHL1O00533 1208 aa26.59■■□□□ 1.85
VPS28-205ENST00000526204 C1orf115Q9H7X2 142 aa26.59■■□□□ 1.85
VPS28-205ENST00000526204 TRHP20396 242 aaPredicted RBP26.58■■□□□ 1.85
VPS28-205ENST00000526204 SIRT2Q8IXJ6 389 aa26.58■■□□□ 1.85
VPS28-205ENST00000526204 KIAA0232Q92628 1395 aa26.58■■□□□ 1.85
VPS28-205ENST00000526204 TTC21AQ8NDW8 1320 aa26.58■■□□□ 1.84
VPS28-205ENST00000526204 INTS3Q68E01 1043 aaKnown RBP26.57■■□□□ 1.84
VPS28-205ENST00000526204 SSH2Q76I76 1423 aa26.56■■□□□ 1.84
VPS28-205ENST00000526204 NALCNQ8IZF0 1738 aa26.55■■□□□ 1.84
VPS28-205ENST00000526204 HSCBQ8IWL3 235 aa26.55■■□□□ 1.84
VPS28-205ENST00000526204 HSP90AB2PQ58FF8 381 aa26.54■■□□□ 1.84
VPS28-205ENST00000526204 PTPRUQ92729 1446 aa26.54■■□□□ 1.84
VPS28-205ENST00000526204 NUTM2FA1L443 756 aa26.53■■□□□ 1.84
VPS28-205ENST00000526204 SLC26A8Q96RN1 970 aa26.53■■□□□ 1.84
VPS28-205ENST00000526204 CHMP5Q9NZZ3 219 aa26.53■■□□□ 1.84
VPS28-205ENST00000526204 TBX22Q9Y458 520 aa26.53■■□□□ 1.84
VPS28-205ENST00000526204 ARHGEF10O15013 1369 aa26.53■■□□□ 1.84
VPS28-205ENST00000526204 SNX21Q969T3 373 aa26.52■■□□□ 1.84
VPS28-205ENST00000526204 AMOTL2Q9Y2J4 779 aa26.52■■□□□ 1.84
VPS28-205ENST00000526204 EIF5BO60841 1220 aaKnown RBP26.51■■□□□ 1.84
VPS28-205ENST00000526204 PTPRCP08575 1304 aa26.51■■□□□ 1.83
VPS28-205ENST00000526204 RGPD1P0DJD0 1748 aa26.51■■□□□ 1.83
VPS28-205ENST00000526204 MCM10Q7L590 875 aa26.51■■□□□ 1.83
VPS28-205ENST00000526204 SLIT1O75093 1534 aa26.5■■□□□ 1.83
VPS28-205ENST00000526204 PEAK1Q9H792 1746 aa26.5■■□□□ 1.83
VPS28-205ENST00000526204 ARHGAP23Q9P227 1491 aa26.49■■□□□ 1.83
VPS28-205ENST00000526204 DCTPP1Q9H773 170 aa26.49■■□□□ 1.83
VPS28-205ENST00000526204 RPAP2Q8IXW5 612 aaPredicted RBP26.48■■□□□ 1.83
VPS28-205ENST00000526204 SBNO1A3KN83 1393 aa26.48■■□□□ 1.83
VPS28-205ENST00000526204 FLT4P35916 1363 aa26.48■■□□□ 1.83
VPS28-205ENST00000526204 MAP3K19Q56UN5 1328 aa26.47■■□□□ 1.83
VPS28-205ENST00000526204 CRB1P82279 1406 aa26.47■■□□□ 1.83
VPS28-205ENST00000526204 IL27Q8NEV9 243 aa26.47■■□□□ 1.83
VPS28-205ENST00000526204 RGS12O14924 1447 aa26.46■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms