RNA–Protein interactions for RNA: ENST00000524306.1

CLINT1-208, Transcript of clathrin interactor 1, humanhuman

TSL 1 (best)

Gene CLINT1, Length 2,905 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLINT1-208ENST00000524306 CCDC61Q9Y6R9 512 aa6.97□□□□□ -1.29
CLINT1-208ENST00000524306 USP31Q70CQ4 1352 aa6.96□□□□□ -1.29
CLINT1-208ENST00000524306 PLEKHG2Q9H7P9 1386 aa6.96□□□□□ -1.29
CLINT1-208ENST00000524306 MAP2P11137 1827 aaKnown RBP6.96□□□□□ -1.3
CLINT1-208ENST00000524306 PLEKHG3A1L390 1219 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 NFE2L2Q16236 605 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 NUTM2DQ5VT03 806 aaPredicted RBP6.96□□□□□ -1.3
CLINT1-208ENST00000524306 ATF7IPQ6VMQ6 1270 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 IFT57Q9NWB7 429 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 USP19O94966 1318 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 RLBP1P12271 317 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 TNNT2P45379 298 aaPredicted RBP6.96□□□□□ -1.3
CLINT1-208ENST00000524306 RTL5Q5HYW3 569 aaPredicted RBP6.96□□□□□ -1.3
CLINT1-208ENST00000524306 SMC5Q8IY18 1101 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 RNF39Q9H2S5 420 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 PCDHB15Q9Y5E8 787 aa6.96□□□□□ -1.3
CLINT1-208ENST00000524306 OVOS2A0A0J9YW53 1432 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 OVOS2Q6IE36 1432 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 RRP7AQ9Y3A4 280 aaKnown RBP6.95□□□□□ -1.3
CLINT1-208ENST00000524306 EID1Q9Y6B2 187 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 NEFMP07197 916 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 RIPK4P57078 832 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 CAMTA1Q9Y6Y1 1673 aa6.95□□□□□ -1.3
CLINT1-208ENST00000524306 HAP1P54257 671 aaPredicted RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 GNAI1P63096 354 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 EXOSC9Q06265 439 aaKnown RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 ZBTB40Q9NUA8 1239 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 EIF5BO60841 1220 aaKnown RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 TRIM27P14373 513 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 C1QBPQ07021 282 aaKnown RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 SSH1Q8WYL5 1049 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 NUDT16Q96DE0 195 aaKnown RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 ROBO2Q9HCK4 1378 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 DEKP35659 375 aaKnown RBP6.94□□□□□ -1.3
CLINT1-208ENST00000524306 PPP4R3CPQ6ZMV5 832 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 SMC4Q9NTJ3 1288 aa6.94□□□□□ -1.3
CLINT1-208ENST00000524306 TTC21AQ8NDW8 1320 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 TRPM3Q9HCF6 1732 aaPredicted RBP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 PIK3C2AO00443 1686 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 U2SURPO15042 1029 aaKnown RBP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 NEUROD2Q15784 382 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 FTSJ3Q8IY81 847 aaKnown RBP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 FRAT1Q92837 279 aaPredicted RBP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 PDZRN3Q9UPQ7 1066 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 ADGRL3Q9HAR2 1447 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 KIAA0232Q92628 1395 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 NPHP4O75161 1426 aaPredicted RBP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 USP6P35125 1406 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 SAFB2Q14151 953 aaKnown RBP eCLIP6.93□□□□□ -1.3
CLINT1-208ENST00000524306 WAPLQ7Z5K2 1190 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 COG3Q96JB2 828 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 ABCC4O15439 1325 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 TTC21BQ7Z4L5 1316 aa6.93□□□□□ -1.3
CLINT1-208ENST00000524306 BECN1Q14457 450 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 NPM2Q86SE8 214 aaKnown RBP6.92□□□□□ -1.3
CLINT1-208ENST00000524306 CFAP44Q96MT7 982 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 TBC1D32Q96NH3 1257 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 ARHGEF10O15013 1369 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 VAMP4O75379 141 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 PRKAR2BP31323 418 aa6.92□□□□□ -1.3
CLINT1-208ENST00000524306 MED1Q15648 1581 aaPredicted RBP6.92□□□□□ -1.3
CLINT1-208ENST00000524306 RGS3P49796 1198 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 MRPL50Q8N5N7 158 aaKnown RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 GCC1Q96CN9 775 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 UPF2Q9HAU5 1272 aaKnown RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 DAXXQ9UER7 740 aaPredicted RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 SOS1Q07889 1333 aaPredicted RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 DLG5Q8TDM6 1919 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 FAM208AQ9UK61 1670 aaKnown RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 LTKP29376 864 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 TSR2Q969E8 191 aaKnown RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 NOB1Q9ULX3 412 aaKnown RBP6.91□□□□□ -1.3
CLINT1-208ENST00000524306 PRR36Q9H6K5 1346 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 CRYBG1Q9Y4K1 1723 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 SLIT3O75094 1523 aa6.91□□□□□ -1.3
CLINT1-208ENST00000524306 ALS2Q96Q42 1657 aa6.9□□□□□ -1.3
CLINT1-208ENST00000524306 NUCB1Q02818 461 aa6.9□□□□□ -1.3
CLINT1-208ENST00000524306 SKAP1Q86WV1 359 aa6.9□□□□□ -1.3
CLINT1-208ENST00000524306 RGPD8O14715 1765 aaPredicted RBP6.9□□□□□ -1.3
CLINT1-208ENST00000524306 LRRC37A3O60309 1634 aa6.9□□□□□ -1.3
CLINT1-208ENST00000524306 API5Q9BZZ5 524 aaKnown RBP6.9□□□□□ -1.3
CLINT1-208ENST00000524306 KDRP35968 1356 aa6.9□□□□□ -1.3
CLINT1-208ENST00000524306 PEAK1Q9H792 1746 aa6.9□□□□□ -1.31
CLINT1-208ENST00000524306 ZBTB7BO15156 539 aaPredicted RBP6.9□□□□□ -1.31
CLINT1-208ENST00000524306 TMEM57Q8N5G2 664 aa6.9□□□□□ -1.31
CLINT1-208ENST00000524306 RTL1A6NKG5 1358 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 HTATSF1O43719 755 aaKnown RBP6.89□□□□□ -1.31
CLINT1-208ENST00000524306 NME9Q86XW9 330 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 TNNQ9UQP3 1299 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 XIRP1Q702N8 1843 aaKnown RBP6.89□□□□□ -1.31
CLINT1-208ENST00000524306 STRCQ7RTU9 1775 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 TXNDC2Q86VQ3 553 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 BABAM1Q9NWV8 329 aa6.89□□□□□ -1.31
CLINT1-208ENST00000524306 LMO7Q8WWI1 1683 aa6.88□□□□□ -1.31
CLINT1-208ENST00000524306 NCAPD2Q15021 1401 aa6.88□□□□□ -1.31
CLINT1-208ENST00000524306 SBNO1A3KN83 1393 aa6.88□□□□□ -1.31
CLINT1-208ENST00000524306 RBM25P49756 843 aaKnown RBP6.88□□□□□ -1.31
CLINT1-208ENST00000524306 NBR1Q14596 966 aa6.88□□□□□ -1.31
CLINT1-208ENST00000524306 NFKBIBQ15653 356 aa6.88□□□□□ -1.31
CLINT1-208ENST00000524306 BMP2KLQ5H9B9 411 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms