RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 STARD3NLO95772 234 aa19.48■□□□□ 0.71
USP42-207ENST00000521713 NUP153P49790 1475 aaKnown RBP19.48■□□□□ 0.71
USP42-207ENST00000521713 TMPOP42166 694 aaKnown RBP19.48■□□□□ 0.71
USP42-207ENST00000521713 CCDC158Q5M9N0 1113 aa19.47■□□□□ 0.71
USP42-207ENST00000521713 NME9Q86XW9 330 aa19.47■□□□□ 0.71
USP42-207ENST00000521713 ATF7IPQ6VMQ6 1270 aa19.47■□□□□ 0.71
USP42-207ENST00000521713 UGGT2Q9NYU1 1516 aa19.47■□□□□ 0.71
USP42-207ENST00000521713 A0A0U1RQG5 324 aaPredicted RBP19.47■□□□□ 0.71
USP42-207ENST00000521713 UHRF1BP1LA0JNW5 1464 aa19.46■□□□□ 0.71
USP42-207ENST00000521713 MYL6BP14649 208 aa19.46■□□□□ 0.71
USP42-207ENST00000521713 PSMA5P28066 241 aa19.46■□□□□ 0.71
USP42-207ENST00000521713 SAFBQ15424 915 aaKnown RBP eCLIP19.46■□□□□ 0.71
USP42-207ENST00000521713 RPRD2Q5VT52 1461 aaKnown RBP19.46■□□□□ 0.71
USP42-207ENST00000521713 WDR97A6NE52 1622 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 BECN2A8MW95 431 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 CCDC39Q9UFE4 941 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 DUOX2Q9NRD8 1548 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 KRT28Q7Z3Y7 464 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 CREBRFQ8IUR6 639 aa19.45■□□□□ 0.7
USP42-207ENST00000521713 CCDC57Q2TAC2 916 aa19.44■□□□□ 0.7
USP42-207ENST00000521713 CCDC47Q96A33 483 aaKnown RBP19.44■□□□□ 0.7
USP42-207ENST00000521713 NOM1Q5C9Z4 860 aaKnown RBP19.44■□□□□ 0.7
USP42-207ENST00000521713 MPHOSPH8Q99549 860 aa19.44■□□□□ 0.7
USP42-207ENST00000521713 SMC3Q9UQE7 1217 aa19.44■□□□□ 0.7
USP42-207ENST00000521713 TPD52L1Q16890 204 aaPredicted RBP19.44■□□□□ 0.7
USP42-207ENST00000521713 ADAMTS12P58397 1594 aa19.44■□□□□ 0.7
USP42-207ENST00000521713 NSD2O96028 1365 aa19.44■□□□□ 0.7
USP42-207ENST00000521713 SART3Q15020 963 aaKnown RBP19.44■□□□□ 0.7
USP42-207ENST00000521713 CCDC70Q6NSX1 233 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 TMOD3Q9NYL9 352 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 CCDC66A2RUB6 948 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 ABCC11Q96J66 1382 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 ABCC10Q5T3U5 1492 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 C22orf23Q9BZE7 217 aa19.43■□□□□ 0.7
USP42-207ENST00000521713 ANO8Q9HCE9 1232 aaPredicted RBP19.43■□□□□ 0.7
USP42-207ENST00000521713 ARGLU1Q9NWB6 273 aaPredicted RBP19.43■□□□□ 0.7
USP42-207ENST00000521713 FYB1O15117 783 aa19.42■□□□□ 0.7
USP42-207ENST00000521713 SLC3A2P08195 630 aaKnown RBP19.42■□□□□ 0.7
USP42-207ENST00000521713 DNAJC2Q99543 621 aaKnown RBP19.42■□□□□ 0.7
USP42-207ENST00000521713 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.42■□□□□ 0.7
USP42-207ENST00000521713 HMGN5P82970 282 aaKnown RBP19.41■□□□□ 0.7
USP42-207ENST00000521713 TTC39AQ5SRH9 613 aa19.41■□□□□ 0.7
USP42-207ENST00000521713 CWC22Q9HCG8 908 aaKnown RBP19.41■□□□□ 0.7
USP42-207ENST00000521713 TTC21BQ7Z4L5 1316 aa19.41■□□□□ 0.7
USP42-207ENST00000521713 BCAR3O75815 825 aa19.41■□□□□ 0.7
USP42-207ENST00000521713 NGLY1Q96IV0 654 aa19.41■□□□□ 0.7
USP42-207ENST00000521713 ADAMTS2O95450 1211 aa19.41■□□□□ 0.7
USP42-207ENST00000521713 TAF7Q15545 349 aaPredicted RBP19.4■□□□□ 0.7
USP42-207ENST00000521713 MSH6P52701 1360 aa19.4■□□□□ 0.7
USP42-207ENST00000521713 LRRCC1Q9C099 1032 aa19.4■□□□□ 0.7
USP42-207ENST00000521713 ZNF652Q9Y2D9 606 aa19.4■□□□□ 0.7
USP42-207ENST00000521713 XBP1P17861 261 aa19.39■□□□□ 0.7
USP42-207ENST00000521713 NASPP49321 788 aaPredicted RBP19.39■□□□□ 0.7
USP42-207ENST00000521713 HOOK1Q9UJC3 728 aaKnown RBP19.39■□□□□ 0.69
USP42-207ENST00000521713 RRP9O43818 475 aaKnown RBP19.39■□□□□ 0.69
USP42-207ENST00000521713 TPM1P09493 284 aa19.39■□□□□ 0.69
USP42-207ENST00000521713 MVPQ14764 893 aaKnown RBP19.39■□□□□ 0.69
USP42-207ENST00000521713 IFT57Q9NWB7 429 aa19.39■□□□□ 0.69
USP42-207ENST00000521713 CEP126Q9P2H0 1117 aa19.39■□□□□ 0.69
USP42-207ENST00000521713 C1orf115Q9H7X2 142 aa19.38■□□□□ 0.69
USP42-207ENST00000521713 PPP1R1BQ9UD71 204 aaPredicted RBP19.38■□□□□ 0.69
USP42-207ENST00000521713 EMILIN1Q9Y6C2 1016 aa19.38■□□□□ 0.69
USP42-207ENST00000521713 KIAA0556O60303 1618 aa19.38■□□□□ 0.69
USP42-207ENST00000521713 FOXD4L6Q3SYB3 417 aaPredicted RBP19.38■□□□□ 0.69
USP42-207ENST00000521713 FOXD4L3Q6VB84 417 aaPredicted RBP19.38■□□□□ 0.69
USP42-207ENST00000521713 VPS37CA5D8V6 355 aaPredicted RBP19.37■□□□□ 0.69
USP42-207ENST00000521713 BRMS1Q9HCU9 246 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 PDZRN3Q9UPQ7 1066 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 ITSN2Q9NZM3 1697 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 DUSP27Q5VZP5 1158 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 SYCP2Q9BX26 1530 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 EXOC5O00471 708 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 PES1O00541 588 aaKnown RBP19.37■□□□□ 0.69
USP42-207ENST00000521713 CCDC173Q0VFZ6 552 aa19.37■□□□□ 0.69
USP42-207ENST00000521713 TSR1Q2NL82 804 aaKnown RBP19.37■□□□□ 0.69
USP42-207ENST00000521713 RPAP2Q8IXW5 612 aaPredicted RBP19.37■□□□□ 0.69
USP42-207ENST00000521713 CEP89Q96ST8 783 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 ACBD3Q9H3P7 528 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 ACEP12821 1306 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 TOM1O60784 492 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 PTCD1O75127 700 aaKnown RBP19.36■□□□□ 0.69
USP42-207ENST00000521713 NCBP3Q53F19 620 aaKnown RBP19.36■□□□□ 0.69
USP42-207ENST00000521713 ZSCAN25Q6NSZ9 544 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 ABCC2Q92887 1545 aa19.36■□□□□ 0.69
USP42-207ENST00000521713 SRGAP3O43295 1099 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 R3HCC1Q9Y3T6 440 aaKnown RBP19.35■□□□□ 0.69
USP42-207ENST00000521713 NUP160Q12769 1436 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 SLFN5Q08AF3 891 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 MCM10Q7L590 875 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 NACAP1Q9BZK3 213 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 TRAPPC8Q9Y2L5 1435 aa19.35■□□□□ 0.69
USP42-207ENST00000521713 LARP1Q6PKG0 1096 aaKnown RBP19.35■□□□□ 0.69
USP42-207ENST00000521713 CCDC43Q96MW1 224 aaKnown RBP19.34■□□□□ 0.69
USP42-207ENST00000521713 CWC15Q9P013 229 aaKnown RBP19.34■□□□□ 0.69
USP42-207ENST00000521713 WDR62O43379 1518 aa19.34■□□□□ 0.69
USP42-207ENST00000521713 BICD2Q8TD16 824 aa19.34■□□□□ 0.69
USP42-207ENST00000521713 PRKCSHP14314 528 aaPredicted RBP19.34■□□□□ 0.69
USP42-207ENST00000521713 SIL1Q9H173 461 aa19.34■□□□□ 0.69
USP42-207ENST00000521713 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.34■□□□□ 0.69
USP42-207ENST00000521713 NPHP3Q7Z494 1330 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms