RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TSHZ3Q63HK5 1081 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 ZRANB1Q9UGI0 708 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 RALGAPBQ86X10 1494 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 NINLQ9Y2I6 1382 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 DMRT2Q9Y5R5 561 aa14.13□□□□□ -0.15
SYNPO-204ENST00000519664 CCT4P50991 539 aaKnown RBP14.13□□□□□ -0.15
SYNPO-204ENST00000519664 PROSER2Q86WR7 435 aaPredicted RBP14.13□□□□□ -0.15
SYNPO-204ENST00000519664 ZMYND15Q9H091 742 aa14.12□□□□□ -0.15
SYNPO-204ENST00000519664 FANCAO15360 1455 aa14.12□□□□□ -0.15
SYNPO-204ENST00000519664 CEBPZQ03701 1054 aaKnown RBP14.12□□□□□ -0.15
SYNPO-204ENST00000519664 STK3Q13188 491 aa14.12□□□□□ -0.15
SYNPO-204ENST00000519664 PLEKHO1Q53GL0 409 aaPredicted RBP14.12□□□□□ -0.15
SYNPO-204ENST00000519664 CWC27Q6UX04 472 aaKnown RBP14.12□□□□□ -0.15
SYNPO-204ENST00000519664 TRAPPC8Q9Y2L5 1435 aa14.12□□□□□ -0.15
SYNPO-204ENST00000519664 MAP7D2Q96T17 732 aa14.12□□□□□ -0.15
SYNPO-204ENST00000519664 SEC24BO95487 1268 aa14.11□□□□□ -0.15
SYNPO-204ENST00000519664 THEMISQ8N1K5 641 aaPredicted RBP14.11□□□□□ -0.15
SYNPO-204ENST00000519664 LARP6Q9BRS8 491 aaKnown RBP14.11□□□□□ -0.15
SYNPO-204ENST00000519664 RAPGEF6Q8TEU7 1601 aa14.11□□□□□ -0.15
SYNPO-204ENST00000519664 R3HCC1Q9Y3T6 440 aaKnown RBP14.11□□□□□ -0.15
SYNPO-204ENST00000519664 WASLO00401 505 aaPredicted RBP14.1□□□□□ -0.15
SYNPO-204ENST00000519664 TPM2P07951 284 aa14.1□□□□□ -0.15
SYNPO-204ENST00000519664 RPAP2Q8IXW5 612 aaPredicted RBP14.1□□□□□ -0.15
SYNPO-204ENST00000519664 PZPP20742 1482 aa14.1□□□□□ -0.15
SYNPO-204ENST00000519664 SYCP2Q9BX26 1530 aa14.1□□□□□ -0.15
SYNPO-204ENST00000519664 MBIPQ9NS73 344 aa14.1□□□□□ -0.15
SYNPO-204ENST00000519664 GRPEL1Q9HAV7 217 aa14.1□□□□□ -0.15
SYNPO-204ENST00000519664 TPM4P67936 248 aa14.09□□□□□ -0.15
SYNPO-204ENST00000519664 PES1O00541 588 aaKnown RBP14.09□□□□□ -0.15
SYNPO-204ENST00000519664 C8orf34Q49A92 452 aa14.09□□□□□ -0.15
SYNPO-204ENST00000519664 STRN4Q9NRL3 753 aa14.09□□□□□ -0.15
SYNPO-204ENST00000519664 HSP90AB2PQ58FF8 381 aa14.09□□□□□ -0.15
SYNPO-204ENST00000519664 TCOF1Q13428 1488 aaKnown RBP14.09□□□□□ -0.15
SYNPO-204ENST00000519664 ANXA1P04083 346 aa14.08□□□□□ -0.16
SYNPO-204ENST00000519664 CCDC85AQ96PX6 553 aaPredicted RBP14.08□□□□□ -0.16
SYNPO-204ENST00000519664 NCKAP5LQ9HCH0 1330 aa14.08□□□□□ -0.16
SYNPO-204ENST00000519664 KRT24Q2M2I5 525 aa14.08□□□□□ -0.16
SYNPO-204ENST00000519664 IFT57Q9NWB7 429 aa14.08□□□□□ -0.16
SYNPO-204ENST00000519664 FOXO3O43524 673 aa14.08□□□□□ -0.16
SYNPO-204ENST00000519664 AEBP1Q8IUX7 1158 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 FAM135AQ9P2D6 1515 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 ALDH1L2Q3SY69 923 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 BTBD11A6QL63 1104 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 SSFA2P28290 1259 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 TRDNQ13061 729 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.07□□□□□ -0.16
SYNPO-204ENST00000519664 GNAT3A8MTJ3 354 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 TBC1D9Q6ZT07 1266 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 AACSQ86V21 672 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 TSPYL6Q8N831 410 aa14.07□□□□□ -0.16
SYNPO-204ENST00000519664 CPLX2Q6PUV4 134 aaKnown RBP14.06□□□□□ -0.16
SYNPO-204ENST00000519664 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.06□□□□□ -0.16
SYNPO-204ENST00000519664 AMOTL2Q9Y2J4 779 aa14.06□□□□□ -0.16
SYNPO-204ENST00000519664 ATP2B1P20020 1258 aa14.06□□□□□ -0.16
SYNPO-204ENST00000519664 MPRIPQ6WCQ1 1025 aa14.06□□□□□ -0.16
SYNPO-204ENST00000519664 NFXL1Q6ZNB6 911 aa14.06□□□□□ -0.16
SYNPO-204ENST00000519664 FMNL2Q96PY5 1086 aa14.06□□□□□ -0.16
SYNPO-204ENST00000519664 TAF7Q15545 349 aaPredicted RBP14.05□□□□□ -0.16
SYNPO-204ENST00000519664 SASS6Q6UVJ0 657 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 MTERF4Q7Z6M4 381 aaKnown RBP14.05□□□□□ -0.16
SYNPO-204ENST00000519664 CCAR2Q8N163 923 aaKnown RBP14.05□□□□□ -0.16
SYNPO-204ENST00000519664 PHACTR3Q96KR7 559 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 RBM42Q9BTD8 480 aaKnown RBP14.05□□□□□ -0.16
SYNPO-204ENST00000519664 FERMT3Q86UX7 667 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 C8orf58Q8NAV2 365 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 TBC1D32Q96NH3 1257 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 LRRFIP2Q9Y608 721 aaKnown RBP14.05□□□□□ -0.16
SYNPO-204ENST00000519664 PLCH2O75038 1416 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 SDF4Q9BRK5 362 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 WDR62O43379 1518 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 KDM5BQ9UGL1 1544 aa14.05□□□□□ -0.16
SYNPO-204ENST00000519664 AKAP17AQ02040 695 aaKnown RBP14.04□□□□□ -0.16
SYNPO-204ENST00000519664 SYNE3Q6ZMZ3 975 aa14.04□□□□□ -0.16
SYNPO-204ENST00000519664 RALYLQ86SE5 291 aaKnown RBP14.04□□□□□ -0.16
SYNPO-204ENST00000519664 C16orf71Q8IYS4 520 aaPredicted RBP14.04□□□□□ -0.16
SYNPO-204ENST00000519664 STK11IPQ8N1F8 1099 aa14.04□□□□□ -0.16
SYNPO-204ENST00000519664 SPC24Q8NBT2 197 aa14.04□□□□□ -0.16
SYNPO-204ENST00000519664 TNPO1Q92973 898 aaKnown RBP14.04□□□□□ -0.16
SYNPO-204ENST00000519664 CFAP43Q8NDM7 1665 aa14.04□□□□□ -0.16
SYNPO-204ENST00000519664 CTTNBP2Q8WZ74 1663 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 MBD3O95983 291 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 MX1P20591 662 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 JAKMIP1Q96N16 626 aaKnown RBP14.03□□□□□ -0.16
SYNPO-204ENST00000519664 MEIS3Q99687 375 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 CLSTN1O94985 981 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 MCM2P49736 904 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 GDPD2Q9HCC8 539 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 CCDC34Q96HJ3 373 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 MAGI3Q5TCQ9 1506 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 CCDC73Q6ZRK6 1079 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 POLKQ9UBT6 870 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 CYP46A1Q9Y6A2 500 aa14.03□□□□□ -0.16
SYNPO-204ENST00000519664 TATP17735 454 aaPredicted RBP14.02□□□□□ -0.16
SYNPO-204ENST00000519664 LRRFIP1Q32MZ4 808 aaKnown RBP14.02□□□□□ -0.16
SYNPO-204ENST00000519664 ABCC11Q96J66 1382 aa14.02□□□□□ -0.16
SYNPO-204ENST00000519664 PTCD1O75127 700 aaKnown RBP14.02□□□□□ -0.16
SYNPO-204ENST00000519664 PSMA5P28066 241 aa14.02□□□□□ -0.16
SYNPO-204ENST00000519664 VPS37DQ86XT2 251 aa14.02□□□□□ -0.16
SYNPO-204ENST00000519664 MTMR7Q9Y216 660 aa14.02□□□□□ -0.16
SYNPO-204ENST00000519664 TEX14Q8IWB6 1497 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms