RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 LTKP29376 864 aa18.9■□□□□ 0.62
NUP54-217ENST00000514987 USP35Q9P2H5 1018 aa18.9■□□□□ 0.62
NUP54-217ENST00000514987 NOB1Q9ULX3 412 aaKnown RBP18.9■□□□□ 0.62
NUP54-217ENST00000514987 TTC21BQ7Z4L5 1316 aa18.9■□□□□ 0.62
NUP54-217ENST00000514987 HMOX1P09601 288 aa18.89■□□□□ 0.62
NUP54-217ENST00000514987 PTCH1Q13635 1447 aa18.89■□□□□ 0.61
NUP54-217ENST00000514987 ARHGAP45Q92619 1136 aa18.89■□□□□ 0.61
NUP54-217ENST00000514987 PHACTR3Q96KR7 559 aa18.89■□□□□ 0.61
NUP54-217ENST00000514987 ZNF853P0CG23 659 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 FBLN1P23142 703 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 ITPRIPQ8IWB1 547 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 THEMISQ8N1K5 641 aaPredicted RBP18.88■□□□□ 0.61
NUP54-217ENST00000514987 ZRANB1Q9UGI0 708 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 PDZRN3Q9UPQ7 1066 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 NALCNQ8IZF0 1738 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 OVOS2A0A0J9YW53 1432 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 USP6P35125 1406 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 OVOS2Q6IE36 1432 aa18.88■□□□□ 0.61
NUP54-217ENST00000514987 ACEP12821 1306 aa18.87■□□□□ 0.61
NUP54-217ENST00000514987 NBR1Q14596 966 aa18.87■□□□□ 0.61
NUP54-217ENST00000514987 FER1L4A9Z1Z3 1794 aa18.87■□□□□ 0.61
NUP54-217ENST00000514987 TTC21AQ8NDW8 1320 aa18.87■□□□□ 0.61
NUP54-217ENST00000514987 NCKAP5LQ9HCH0 1330 aa18.87■□□□□ 0.61
NUP54-217ENST00000514987 HAP1P54257 671 aaPredicted RBP18.85■□□□□ 0.61
NUP54-217ENST00000514987 USP31Q70CQ4 1352 aa18.85■□□□□ 0.61
NUP54-217ENST00000514987 DLG5Q8TDM6 1919 aa18.85■□□□□ 0.61
NUP54-217ENST00000514987 PTPRUQ92729 1446 aa18.85■□□□□ 0.61
NUP54-217ENST00000514987 CFAP44Q96MT7 982 aa18.85■□□□□ 0.61
NUP54-217ENST00000514987 ZBTB40Q9NUA8 1239 aa18.85■□□□□ 0.61
NUP54-217ENST00000514987 VAMP4O75379 141 aa18.84■□□□□ 0.61
NUP54-217ENST00000514987 RRS1Q15050 365 aaKnown RBP18.84■□□□□ 0.61
NUP54-217ENST00000514987 TMEM57Q8N5G2 664 aa18.84■□□□□ 0.61
NUP54-217ENST00000514987 UPF2Q9HAU5 1272 aaKnown RBP18.84■□□□□ 0.61
NUP54-217ENST00000514987 LAS1LQ9Y4W2 734 aaKnown RBP18.84■□□□□ 0.61
NUP54-217ENST00000514987 RIMS1Q86UR5 1692 aaKnown RBP18.84■□□□□ 0.61
NUP54-217ENST00000514987 SSH2Q76I76 1423 aa18.83■□□□□ 0.61
NUP54-217ENST00000514987 AMOTL2Q9Y2J4 779 aa18.83■□□□□ 0.6
NUP54-217ENST00000514987 PIK3R4Q99570 1358 aa18.83■□□□□ 0.6
NUP54-217ENST00000514987 CEBPAP49715 358 aaPredicted RBP18.81■□□□□ 0.6
NUP54-217ENST00000514987 SMC5Q8IY18 1101 aa18.81■□□□□ 0.6
NUP54-217ENST00000514987 MRPL50Q8N5N7 158 aaKnown RBP18.81■□□□□ 0.6
NUP54-217ENST00000514987 SLC26A8Q96RN1 970 aa18.81■□□□□ 0.6
NUP54-217ENST00000514987 EIF4A2Q14240 407 aaKnown RBP18.81■□□□□ 0.6
NUP54-217ENST00000514987 MBIPQ9NS73 344 aa18.81■□□□□ 0.6
NUP54-217ENST00000514987 ANKARQ7Z5J8 1434 aa18.8■□□□□ 0.6
NUP54-217ENST00000514987 RGPD1P0DJD0 1748 aa18.79■□□□□ 0.6
NUP54-217ENST00000514987 XRN1Q8IZH2 1706 aaKnown RBP18.79■□□□□ 0.6
NUP54-217ENST00000514987 KIF24Q5T7B8 1368 aa18.78■□□□□ 0.6
NUP54-217ENST00000514987 BECN1Q14457 450 aa18.78■□□□□ 0.6
NUP54-217ENST00000514987 TWISTNBQ3B726 338 aaPredicted RBP18.78■□□□□ 0.6
NUP54-217ENST00000514987 API5Q9BZZ5 524 aaKnown RBP18.78■□□□□ 0.6
NUP54-217ENST00000514987 ARHGEF10O15013 1369 aa18.77■□□□□ 0.6
NUP54-217ENST00000514987 USP19O94966 1318 aa18.77■□□□□ 0.6
NUP54-217ENST00000514987 SULT6B1Q6IMI4 303 aa18.76■□□□□ 0.59
NUP54-217ENST00000514987 THUMPD2Q9BTF0 503 aaKnown RBP18.76■□□□□ 0.59
NUP54-217ENST00000514987 ABCC4O15439 1325 aa18.76■□□□□ 0.59
NUP54-217ENST00000514987 DEKP35659 375 aaKnown RBP18.76■□□□□ 0.59
NUP54-217ENST00000514987 PEAK1Q9H792 1746 aa18.75■□□□□ 0.59
NUP54-217ENST00000514987 FMN2Q9NZ56 1722 aa18.75■□□□□ 0.59
NUP54-217ENST00000514987 SBNO1A3KN83 1393 aa18.74■□□□□ 0.59
NUP54-217ENST00000514987 KIAA0232Q92628 1395 aa18.74■□□□□ 0.59
NUP54-217ENST00000514987 ZBTB7BO15156 539 aaPredicted RBP18.74■□□□□ 0.59
NUP54-217ENST00000514987 NGDNQ8NEJ9 315 aaKnown RBP18.74■□□□□ 0.59
NUP54-217ENST00000514987 GCC1Q96CN9 775 aa18.74■□□□□ 0.59
NUP54-217ENST00000514987 FLT4P35916 1363 aa18.74■□□□□ 0.59
NUP54-217ENST00000514987 NUCB1Q02818 461 aa18.73■□□□□ 0.59
NUP54-217ENST00000514987 TSPYL6Q8N831 410 aa18.73■□□□□ 0.59
NUP54-217ENST00000514987 CHL1O00533 1208 aa18.72■□□□□ 0.59
NUP54-217ENST00000514987 SEC24BO95487 1268 aa18.72■□□□□ 0.59
NUP54-217ENST00000514987 C8orf58Q8NAV2 365 aa18.72■□□□□ 0.59
NUP54-217ENST00000514987 TBC1D32Q96NH3 1257 aa18.72■□□□□ 0.59
NUP54-217ENST00000514987 USP54Q70EL1 1684 aa18.71■□□□□ 0.59
NUP54-217ENST00000514987 CEP170BQ9Y4F5 1589 aaPredicted RBP18.71■□□□□ 0.59
NUP54-217ENST00000514987 NUTM2FA1L443 756 aa18.71■□□□□ 0.59
NUP54-217ENST00000514987 HSP90AB2PQ58FF8 381 aa18.71■□□□□ 0.59
NUP54-217ENST00000514987 AEBP1Q8IUX7 1158 aa18.7■□□□□ 0.58
NUP54-217ENST00000514987 MAP3K19Q56UN5 1328 aa18.7■□□□□ 0.58
NUP54-217ENST00000514987 RGPD8O14715 1765 aaPredicted RBP18.69■□□□□ 0.58
NUP54-217ENST00000514987 FAM83GA6ND36 823 aa18.68■□□□□ 0.58
NUP54-217ENST00000514987 KDRP35968 1356 aa18.68■□□□□ 0.58
NUP54-217ENST00000514987 PIK3C2AO00443 1686 aa18.68■□□□□ 0.58
NUP54-217ENST00000514987 ELL2O00472 640 aaPredicted RBP18.68■□□□□ 0.58
NUP54-217ENST00000514987 SLC4A3P48751 1232 aa18.68■□□□□ 0.58
NUP54-217ENST00000514987 CHD1LQ86WJ1 897 aa18.68■□□□□ 0.58
NUP54-217ENST00000514987 HTATSF1O43719 755 aaKnown RBP18.67■□□□□ 0.58
NUP54-217ENST00000514987 AMPHP49418 695 aa18.67■□□□□ 0.58
NUP54-217ENST00000514987 PTPRCP08575 1304 aa18.66■□□□□ 0.58
NUP54-217ENST00000514987 DCTN1Q14203 1278 aa18.66■□□□□ 0.58
NUP54-217ENST00000514987 INTS3Q68E01 1043 aaKnown RBP18.66■□□□□ 0.58
NUP54-217ENST00000514987 GAS2L2Q8NHY3 880 aa18.66■□□□□ 0.58
NUP54-217ENST00000514987 EIF5BO60841 1220 aaKnown RBP18.65■□□□□ 0.58
NUP54-217ENST00000514987 RTF1Q92541 710 aaKnown RBP18.65■□□□□ 0.58
NUP54-217ENST00000514987 CRB1P82279 1406 aa18.65■□□□□ 0.58
NUP54-217ENST00000514987 IGSF1Q8N6C5 1336 aa18.65■□□□□ 0.58
NUP54-217ENST00000514987 NFKBIBQ15653 356 aa18.64■□□□□ 0.58
NUP54-217ENST00000514987 KCNA6P17658 529 aa18.64■□□□□ 0.57
NUP54-217ENST00000514987 ZNF142P52746 1687 aaPredicted RBP18.63■□□□□ 0.57
NUP54-217ENST00000514987 BMP2KLQ5H9B9 411 aa18.63■□□□□ 0.57
NUP54-217ENST00000514987 NLRP6P59044 892 aa18.62■□□□□ 0.57
NUP54-217ENST00000514987 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms