RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 PPIP5K1Q6PFW1 1433 aa9.7□□□□□ -0.86
CLIP1-205ENST00000514271 LRRC59Q96AG4 307 aaKnown RBP9.7□□□□□ -0.86
CLIP1-205ENST00000514271 CRYBG1Q9Y4K1 1723 aa9.7□□□□□ -0.86
CLIP1-205ENST00000514271 MINK1Q8N4C8 1332 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-205ENST00000514271 NUDT16Q96DE0 195 aaKnown RBP9.69□□□□□ -0.86
CLIP1-205ENST00000514271 CPSF1Q10570 1443 aaKnown RBP9.69□□□□□ -0.86
CLIP1-205ENST00000514271 IGSF3O75054 1194 aa9.69□□□□□ -0.86
CLIP1-205ENST00000514271 C20orf194Q5TEA3 1177 aa9.69□□□□□ -0.86
CLIP1-205ENST00000514271 TERF2IPQ9NYB0 399 aa9.69□□□□□ -0.86
CLIP1-205ENST00000514271 EDC4Q6P2E9 1401 aaKnown RBP9.68□□□□□ -0.86
CLIP1-205ENST00000514271 ABCA3Q99758 1704 aa9.68□□□□□ -0.86
CLIP1-205ENST00000514271 PPM1GO15355 546 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-205ENST00000514271 CDCA7LQ96GN5 454 aa9.68□□□□□ -0.86
CLIP1-205ENST00000514271 ZBTB47Q9UFB7 747 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-205ENST00000514271 ANKRD36BQ8N2N9 1353 aa9.68□□□□□ -0.86
CLIP1-205ENST00000514271 DLG5Q8TDM6 1919 aa9.68□□□□□ -0.86
CLIP1-205ENST00000514271 NSD2O96028 1365 aa9.68□□□□□ -0.86
CLIP1-205ENST00000514271 HDGFL2Q7Z4V5 671 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-205ENST00000514271 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.67□□□□□ -0.86
CLIP1-205ENST00000514271 ST20-MTHFSA0A0A6YYL1 179 aa9.67□□□□□ -0.86
CLIP1-205ENST00000514271 ANP32AP39687 249 aaKnown RBP9.67□□□□□ -0.86
CLIP1-205ENST00000514271 SRPK2P78362 688 aaKnown RBP9.67□□□□□ -0.86
CLIP1-205ENST00000514271 NWD2Q9ULI1 1742 aa9.67□□□□□ -0.86
CLIP1-205ENST00000514271 USP6P35125 1406 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 PHRF1Q9P1Y6 1649 aaKnown RBP9.66□□□□□ -0.86
CLIP1-205ENST00000514271 CENPQQ7L2Z9 268 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-205ENST00000514271 SLIT3O75094 1523 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 USP31Q70CQ4 1352 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 SSH2Q76I76 1423 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 RGPD1P0DJD0 1748 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 ZBTB22O15209 634 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 SLFN5Q08AF3 891 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 ESCO1Q5FWF5 840 aa9.66□□□□□ -0.86
CLIP1-205ENST00000514271 FRAT1Q92837 279 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-205ENST00000514271 BRPF3Q9ULD4 1205 aa9.65□□□□□ -0.86
CLIP1-205ENST00000514271 PRR36Q9H6K5 1346 aa9.65□□□□□ -0.86
CLIP1-205ENST00000514271 COL14A1Q05707 1796 aaKnown RBP9.65□□□□□ -0.87
CLIP1-205ENST00000514271 SPATA31A3Q5VYP0 1347 aa9.65□□□□□ -0.87
CLIP1-205ENST00000514271 PNPLA6Q8IY17 1366 aa9.65□□□□□ -0.87
CLIP1-205ENST00000514271 CRBNQ96SW2 442 aa9.64□□□□□ -0.87
CLIP1-205ENST00000514271 NGDNQ8NEJ9 315 aaKnown RBP9.64□□□□□ -0.87
CLIP1-205ENST00000514271 FAM208AQ9UK61 1670 aaKnown RBP9.64□□□□□ -0.87
CLIP1-205ENST00000514271 KIF24Q5T7B8 1368 aa9.64□□□□□ -0.87
CLIP1-205ENST00000514271 NBR1Q14596 966 aa9.63□□□□□ -0.87
CLIP1-205ENST00000514271 KRT28Q7Z3Y7 464 aa9.63□□□□□ -0.87
CLIP1-205ENST00000514271 SKAP1Q86WV1 359 aa9.63□□□□□ -0.87
CLIP1-205ENST00000514271 SPINK5Q9NQ38 1064 aaPredicted RBP9.62□□□□□ -0.87
CLIP1-205ENST00000514271 CD163L1Q9NR16 1453 aa9.62□□□□□ -0.87
CLIP1-205ENST00000514271 ACEP12821 1306 aa9.62□□□□□ -0.87
CLIP1-205ENST00000514271 PIK3C2AO00443 1686 aa9.62□□□□□ -0.87
CLIP1-205ENST00000514271 PIP4K2BP78356 416 aa9.62□□□□□ -0.87
CLIP1-205ENST00000514271 FAM161AQ3B820 660 aa9.62□□□□□ -0.87
CLIP1-205ENST00000514271 RRAGDQ9NQL2 400 aaPredicted RBP9.62□□□□□ -0.87
CLIP1-205ENST00000514271 CGNL1Q0VF96 1302 aa9.61□□□□□ -0.87
CLIP1-205ENST00000514271 SAFB2Q14151 953 aaKnown RBP eCLIP9.61□□□□□ -0.87
CLIP1-205ENST00000514271 DDRGK1Q96HY6 314 aa9.61□□□□□ -0.87
CLIP1-205ENST00000514271 PLEKHG2Q9H7P9 1386 aa9.61□□□□□ -0.87
CLIP1-205ENST00000514271 FGD1P98174 961 aa9.61□□□□□ -0.87
CLIP1-205ENST00000514271 KCNH5Q8NCM2 988 aa9.61□□□□□ -0.87
CLIP1-205ENST00000514271 CPDO75976 1380 aa9.6□□□□□ -0.87
CLIP1-205ENST00000514271 ORAI2Q96SN7 254 aa9.6□□□□□ -0.87
CLIP1-205ENST00000514271 CABP2Q9NPB3 220 aa9.6□□□□□ -0.87
CLIP1-205ENST00000514271 HSPA1LP34931 641 aa9.6□□□□□ -0.87
CLIP1-205ENST00000514271 CLEC17AQ6ZS10 378 aa9.6□□□□□ -0.87
CLIP1-205ENST00000514271 NEFMP07197 916 aa9.59□□□□□ -0.87
CLIP1-205ENST00000514271 RTL1A6NKG5 1358 aa9.59□□□□□ -0.87
CLIP1-205ENST00000514271 LRRC37A3O60309 1634 aa9.59□□□□□ -0.87
CLIP1-205ENST00000514271 TTC21BQ7Z4L5 1316 aa9.59□□□□□ -0.87
CLIP1-205ENST00000514271 A0A1W2PP64 1363 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 PPP2R1AP30153 589 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 CABP1Q9NZU7 370 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 OVOS2A0A0J9YW53 1432 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 OVOS2Q6IE36 1432 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 PLCH1Q4KWH8 1693 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 SEC24BO95487 1268 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 IGHDP01880 384 aa9.58□□□□□ -0.88
CLIP1-205ENST00000514271 RBM33Q96EV2 1170 aaKnown RBP9.58□□□□□ -0.88
CLIP1-205ENST00000514271 ILDR1Q86SU0 546 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-205ENST00000514271 CDK12Q9NYV4 1490 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-205ENST00000514271 NRAPQ86VF7 1730 aa9.57□□□□□ -0.88
CLIP1-205ENST00000514271 NGEFQ8N5V2 710 aa9.57□□□□□ -0.88
CLIP1-205ENST00000514271 AATKQ6ZMQ8 1374 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 LMO7Q8WWI1 1683 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 NFAT5O94916 1531 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 FOXO3O43524 673 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 TBC1D32Q96NH3 1257 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 RSPH6AQ9H0K4 717 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 ADAMTS8Q9UP79 889 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 AAMPQ13685 434 aa9.56□□□□□ -0.88
CLIP1-205ENST00000514271 IBTKQ9P2D0 1353 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-205ENST00000514271 CFAP44Q96MT7 982 aa9.55□□□□□ -0.88
CLIP1-205ENST00000514271 FRAT2O75474 233 aaPredicted RBP9.55□□□□□ -0.88
CLIP1-205ENST00000514271 PDE3AQ14432 1141 aa9.55□□□□□ -0.88
CLIP1-205ENST00000514271 CCDC27Q2M243 656 aa9.55□□□□□ -0.88
CLIP1-205ENST00000514271 ZNF772Q68DY9 489 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-205ENST00000514271 PMFBP1Q8TBY8 1022 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 TMC1Q8TDI8 760 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 SLIT2O94813 1529 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 PLIN1O60240 522 aa9.54□□□□□ -0.88
CLIP1-205ENST00000514271 CLCN1P35523 988 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms