RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RABEP1Q15276 862 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 SPATA24Q86W54 205 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 SPC24Q8NBT2 197 aa10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 C9orf78Q9NZ63 289 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-218ENST00000513024 LRRFIP1Q32MZ4 808 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 CPSF2Q9P2I0 782 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 URB2Q14146 1524 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 EZRP15311 586 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 ENOX2Q16206 610 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 ZNF644Q9H582 1327 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 EHBP1L1Q8N3D4 1523 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 NCOA1Q15788 1441 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 MICALCLQ6ZW33 695 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 CDC45O75419 566 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 NGEFQ8N5V2 710 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 FMNL2Q96PY5 1086 aa10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 BCCIPQ9P287 314 aaKnown RBP eCLIP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 PRG4Q92954 1404 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-218ENST00000513024 NEK4P51957 841 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 ODF2Q5BJF6 829 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 STAC3Q96MF2 364 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 GBP3Q9H0R5 595 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 GBP2P32456 591 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 FKBP5Q13451 457 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 NBPF1Q3BBV0 1214 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 ADAMTS8Q9UP79 889 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 EVC2Q86UK5 1308 aa10.33□□□□□ -0.76
LIMCH1-218ENST00000513024 PDZRN3Q9UPQ7 1066 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 MIA2Q96PC5 1412 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 ANKRD30BQ9BXX2 1392 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 FIBPO43427 364 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 GTPBP4Q9BZE4 634 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 SUPT6HQ7KZ85 1726 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 UBAP1LF5GYI3 381 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 C16orf71Q8IYS4 520 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 CUL7Q14999 1698 aa10.32□□□□□ -0.76
LIMCH1-218ENST00000513024 HSP90AB2PQ58FF8 381 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 TAX1BP1Q86VP1 789 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 VPS37DQ86XT2 251 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 RUNDC1Q96C34 613 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 CCDC144AA2RUR9 1427 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 OFD1O75665 1012 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 DYNC1I1O14576 645 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 DIAPH1O60610 1272 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 SMARCE1Q969G3 411 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 NLRP2Q9NX02 1062 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 SEPT6Q14141 434 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 PPP4R3BQ5MIZ7 849 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 OLFM4Q6UX06 510 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 CCDC91Q7Z6B0 441 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 CRACR2AQ9BSW2 395 aa10.31□□□□□ -0.76
LIMCH1-218ENST00000513024 ANKRD18AQ8IVF6 992 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 BRD2P25440 801 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 SEPT7Q16181 437 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 AKNAQ7Z591 1439 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 KIF2AO00139 706 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 FAM193AP78312 1265 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 TRDNQ13061 729 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 SMC2O95347 1197 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 NBPF14Q5TI25 921 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 LUZP1Q86V48 1076 aa10.3□□□□□ -0.76
LIMCH1-218ENST00000513024 WDR66Q8TBY9 1149 aa10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 SLC26A8Q96RN1 970 aa10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 POLR3GO15318 223 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 NFXL1Q6ZNB6 911 aa10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 ANKRD62A6NC57 917 aa10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 MCM4P33991 863 aa10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 G3BP1Q13283 466 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 RNF187Q5TA31 235 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-218ENST00000513024 DDX58O95786 925 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 FILIP1Q7Z7B0 1213 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 ESCO1Q5FWF5 840 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 TXLNBQ8N3L3 684 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 NGLY1Q96IV0 654 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 RPRD2Q5VT52 1461 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 UGGT2Q9NYU1 1516 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 THOC2Q8NI27 1593 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 AAMPQ13685 434 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 MINK1Q8N4C8 1332 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 CFAP45Q9UL16 551 aa10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 EPRSP07814 1512 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-218ENST00000513024 MAP2K1Q02750 393 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-218ENST00000513024 IQCEQ6IPM2 695 aa10.27□□□□□ -0.76
LIMCH1-218ENST00000513024 PNISRQ8TF01 805 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-218ENST00000513024 SUDS3Q9H7L9 328 aaPredicted RBP10.27□□□□□ -0.76
LIMCH1-218ENST00000513024 KINO60870 393 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 HMOX1P09601 288 aa10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 FAM114A1Q8IWE2 563 aa10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 MAGI1Q96QZ7 1491 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 KDM4AO75164 1064 aa10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 CEBPZQ03701 1054 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 MPHOSPH10O00566 681 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 BCAR3O75815 825 aa10.27□□□□□ -0.77
LIMCH1-218ENST00000513024 RAD21O60216 631 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 SAFBQ15424 915 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 FILIP1LQ4L180 1135 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 CCDC181Q5TID7 509 aa10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 SMG6Q86US8 1419 aaKnown RBP10.26□□□□□ -0.77
LIMCH1-218ENST00000513024 ERC2O15083 957 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms