RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 KRT24Q2M2I5 525 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 OSCARQ8IYS5 282 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 GBP4Q96PP9 640 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 GAS2L2Q8NHY3 880 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 NAP1L5Q96NT1 182 aaPredicted RBP11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 PTPRMP28827 1452 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 HECW2Q9P2P5 1572 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 MLECQ14165 292 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 ZNF428Q96B54 188 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 YEATS2Q9ULM3 1422 aa11.52□□□□□ -0.57
LIMCH1-215ENST00000512632 SSFA2P28290 1259 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 CALD1Q05682 793 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 SIGLEC1Q9BZZ2 1709 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 IL13P35225 146 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 CHMP4BQ9H444 224 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 K7ELQ4 463 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 ARHGAP45Q92619 1136 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 IFT57Q9NWB7 429 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 RAB3GAP1Q15042 981 aa11.51□□□□□ -0.57
LIMCH1-215ENST00000512632 GSPT1P15170 499 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 BRPF1P55201 1214 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 TXNDC2Q86VQ3 553 aa11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 OTUD7AQ8TE49 926 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 CDC45O75419 566 aa11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 API5Q9BZZ5 524 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 CIZ1Q9ULV3 898 aaPredicted RBP11.5□□□□□ -0.57
LIMCH1-215ENST00000512632 SOX12O15370 315 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 FAM135BQ49AJ0 1406 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 CFAP44Q96MT7 982 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 ZFYVE9O95405 1425 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 LRRC7Q96NW7 1537 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 NUTM2FA1L443 756 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 ZNF853P0CG23 659 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 PLEKHM2Q8IWE5 1019 aa11.49□□□□□ -0.57
LIMCH1-215ENST00000512632 AEBP1Q8IUX7 1158 aa11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 ABCC4O15439 1325 aa11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 SMARCA5O60264 1052 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 COG3Q96JB2 828 aa11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 PIK3C2BO00750 1634 aa11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 NCOA3Q9Y6Q9 1424 aa11.48□□□□□ -0.57
LIMCH1-215ENST00000512632 TRIM44Q96DX7 344 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 ARHGAP31Q2M1Z3 1444 aa11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 NCLP19338 710 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 CLCN1P35523 988 aa11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 DDX49Q9Y6V7 483 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 ARHGEF40Q8TER5 1519 aa11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 SULT6B1Q6IMI4 303 aa11.47□□□□□ -0.57
LIMCH1-215ENST00000512632 MED14O60244 1454 aa11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 MCM10Q7L590 875 aa11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 NUDT16Q96DE0 195 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 ESPNB1AK53 854 aa11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 WASLO00401 505 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 DCTPP1Q9H773 170 aa11.46□□□□□ -0.57
LIMCH1-215ENST00000512632 LMOD3Q0VAK6 560 aa11.46□□□□□ -0.58
LIMCH1-215ENST00000512632 ERBB4Q15303 1308 aa11.46□□□□□ -0.58
LIMCH1-215ENST00000512632 MIS18AQ9NYP9 233 aa11.46□□□□□ -0.58
LIMCH1-215ENST00000512632 GOLGA6L22H0YM25 854 aa11.45□□□□□ -0.58
LIMCH1-215ENST00000512632 SKOR2Q2VWA4 1001 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-215ENST00000512632 PTCH1Q13635 1447 aa11.45□□□□□ -0.58
LIMCH1-215ENST00000512632 BAG4O95429 457 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-215ENST00000512632 PKP1Q13835 747 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 TTC22Q5TAA0 569 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 MCTP1Q6DN14 999 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 MEIS3Q99687 375 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 PIK3R4Q99570 1358 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 SLC4A10Q6U841 1118 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 CCDC61Q9Y6R9 512 aa11.44□□□□□ -0.58
LIMCH1-215ENST00000512632 SDSP20132 328 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 DIP2CQ9Y2E4 1556 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 FOXD4L5Q5VV16 416 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 ANKRD44Q8N8A2 993 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 FOXD4L4Q8WXT5 416 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 CHAMP1Q96JM3 812 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 USP26Q9BXU7 913 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 RABEP1Q15276 862 aa11.43□□□□□ -0.58
LIMCH1-215ENST00000512632 ALKQ9UM73 1620 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 ISY1Q9ULR0 285 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 NEO1Q92859 1461 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 F6X3S4 739 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 SLC4A2P04920 1241 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 EIF4A2Q14240 407 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 INTS3Q68E01 1043 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 CYB5RLQ6IPT4 315 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 CEP85Q6P2H3 762 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 ZGPATQ8N5A5 531 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 RIMS2Q9UQ26 1411 aa11.42□□□□□ -0.58
LIMCH1-215ENST00000512632 HSP90AB2PQ58FF8 381 aa11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 CAVIN1Q6NZI2 390 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 MYO5BQ9ULV0 1848 aa11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 NASPP49321 788 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 TSHZ3Q63HK5 1081 aa11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 RPAP2Q8IXW5 612 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-215ENST00000512632 TMEM131LA2VDJ0 1609 aa11.4□□□□□ -0.58
LIMCH1-215ENST00000512632 METP08581 1390 aa11.4□□□□□ -0.58
LIMCH1-215ENST00000512632 FOXO3O43524 673 aa11.4□□□□□ -0.59
LIMCH1-215ENST00000512632 G2E3Q7L622 706 aa11.4□□□□□ -0.59
LIMCH1-215ENST00000512632 KLHL40Q2TBA0 621 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 EDC4Q6P2E9 1401 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 CFAP74Q9C0B2 1584 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 CHL1O00533 1208 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms