RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 LYPD8Q6UX82 237 aa10.61□□□□□ -0.71
PDLIM3-208ENST00000512380 CABLES1Q8TDN4 633 aa10.61□□□□□ -0.71
PDLIM3-208ENST00000512380 NDUFB9Q9Y6M9 179 aa10.6□□□□□ -0.71
PDLIM3-208ENST00000512380 SH3BP2P78314 561 aa10.59□□□□□ -0.71
PDLIM3-208ENST00000512380 WASHC4Q2M389 1173 aa10.59□□□□□ -0.71
PDLIM3-208ENST00000512380 RTL5Q5HYW3 569 aaPredicted RBP10.59□□□□□ -0.71
PDLIM3-208ENST00000512380 ABCC9O60706 1549 aa10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 J3QL48 77 aa10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 LILRB3O75022 631 aa10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 F12P00748 615 aaPredicted RBP10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 LMOD1P29536 600 aaPredicted RBP10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 EHBP1Q8NDI1 1231 aa10.58□□□□□ -0.72
PDLIM3-208ENST00000512380 PALM3A6NDB9 673 aaPredicted RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 NUTM2BA6NNL0 878 aaPredicted RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 NUTM2EB1AL46 878 aaPredicted RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 AXIN1O15169 862 aa10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 HMGB1P09429 215 aaKnown RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 CDCA8Q53HL2 280 aa10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 NUTM2DQ5VT03 806 aaPredicted RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 NUTM2AQ8IVF1 878 aaPredicted RBP10.57□□□□□ -0.72
PDLIM3-208ENST00000512380 SIAH2O43255 324 aa10.56□□□□□ -0.72
PDLIM3-208ENST00000512380 ZNF511Q8NB15 262 aa10.56□□□□□ -0.72
PDLIM3-208ENST00000512380 GJD4Q96KN9 370 aaPredicted RBP10.56□□□□□ -0.72
PDLIM3-208ENST00000512380 UNCXA6NJT0 531 aa10.55□□□□□ -0.72
PDLIM3-208ENST00000512380 POTECB2RU33 542 aa10.55□□□□□ -0.72
PDLIM3-208ENST00000512380 VAC14Q08AM6 782 aa10.55□□□□□ -0.72
PDLIM3-208ENST00000512380 LINC01559Q495D7 138 aa10.55□□□□□ -0.72
PDLIM3-208ENST00000512380 BAP1Q92560 729 aa10.55□□□□□ -0.72
PDLIM3-208ENST00000512380 TMEM88BA6NKF7 163 aa10.54□□□□□ -0.72
PDLIM3-208ENST00000512380 MAP10Q9P2G4 905 aa10.54□□□□□ -0.72
PDLIM3-208ENST00000512380 PER1O15534 1290 aaPredicted RBP10.53□□□□□ -0.72
PDLIM3-208ENST00000512380 CTHP32929 405 aa10.53□□□□□ -0.72
PDLIM3-208ENST00000512380 ALDH1A1P00352 501 aa10.52□□□□□ -0.73
PDLIM3-208ENST00000512380 HSP90B1P14625 803 aaKnown RBP10.52□□□□□ -0.73
PDLIM3-208ENST00000512380 HPS1Q92902 700 aa10.52□□□□□ -0.73
PDLIM3-208ENST00000512380 TFIP11Q9UBB9 837 aaKnown RBP10.52□□□□□ -0.73
PDLIM3-208ENST00000512380 DACH1Q9UI36 760 aa10.52□□□□□ -0.73
PDLIM3-208ENST00000512380 ATG7O95352 703 aa10.51□□□□□ -0.73
PDLIM3-208ENST00000512380 HELBQ8NG08 1087 aaPredicted RBP10.51□□□□□ -0.73
PDLIM3-208ENST00000512380 ALG2Q9H553 416 aa10.51□□□□□ -0.73
PDLIM3-208ENST00000512380 VARSP26640 1264 aaKnown RBP10.5□□□□□ -0.73
PDLIM3-208ENST00000512380 TSC1Q92574 1164 aa10.5□□□□□ -0.73
PDLIM3-208ENST00000512380 CDK11BP21127 795 aaKnown RBP10.49□□□□□ -0.73
PDLIM3-208ENST00000512380 MPNDQ8N594 471 aa10.49□□□□□ -0.73
PDLIM3-208ENST00000512380 CDK11AQ9UQ88 783 aaPredicted RBP10.49□□□□□ -0.73
PDLIM3-208ENST00000512380 GNEQ9Y223 722 aaKnown RBP10.49□□□□□ -0.73
PDLIM3-208ENST00000512380 ZNF775Q96BV0 537 aaPredicted RBP10.48□□□□□ -0.73
PDLIM3-208ENST00000512380 UCN2Q96RP3 112 aa10.48□□□□□ -0.73
PDLIM3-208ENST00000512380 HMX1Q9NP08 348 aaPredicted RBP10.48□□□□□ -0.73
PDLIM3-208ENST00000512380 GMPR2Q9P2T1 348 aaKnown RBP10.48□□□□□ -0.73
PDLIM3-208ENST00000512380 TLL2Q9Y6L7 1015 aa10.48□□□□□ -0.73
PDLIM3-208ENST00000512380 RBM47A0AV96 593 aaKnown RBP10.47□□□□□ -0.73
PDLIM3-208ENST00000512380 GPR37L1O60883 481 aa10.47□□□□□ -0.73
PDLIM3-208ENST00000512380 PUS7Q96PZ0 661 aaKnown RBP10.47□□□□□ -0.73
PDLIM3-208ENST00000512380 ATP13A2Q9NQ11 1180 aa10.47□□□□□ -0.73
PDLIM3-208ENST00000512380 WASF2Q9Y6W5 498 aa10.47□□□□□ -0.73
PDLIM3-208ENST00000512380 B4GALNT3Q6L9W6 998 aa10.46□□□□□ -0.73
PDLIM3-208ENST00000512380 TRIM34Q9BYJ4 488 aa10.46□□□□□ -0.73
PDLIM3-208ENST00000512380 CTDSPL2Q05D32 466 aa10.45□□□□□ -0.74
PDLIM3-208ENST00000512380 ARMC2Q8NEN0 867 aa10.44□□□□□ -0.74
PDLIM3-208ENST00000512380 FAM174AQ8TBP5 190 aa10.44□□□□□ -0.74
PDLIM3-208ENST00000512380 FOXJ1Q92949 421 aa10.44□□□□□ -0.74
PDLIM3-208ENST00000512380 MAFBQ9Y5Q3 323 aaPredicted RBP10.44□□□□□ -0.74
PDLIM3-208ENST00000512380 IGSF5Q9NSI5 407 aa10.43□□□□□ -0.74
PDLIM3-208ENST00000512380 C11orf95C9JLR9 678 aaPredicted RBP10.42□□□□□ -0.74
PDLIM3-208ENST00000512380 NBPF14Q5TI25 921 aa10.42□□□□□ -0.74
PDLIM3-208ENST00000512380 CCER1Q8TC90 406 aaPredicted RBP10.42□□□□□ -0.74
PDLIM3-208ENST00000512380 SEMA3FQ13275 785 aa10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 C4orf48Q5BLP8 95 aa10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 TBC1D9Q6ZT07 1266 aa10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 BPHLQ86WA6 291 aaPredicted RBP10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 CDK15Q96Q40 435 aa10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 SENP2Q9HC62 589 aa10.41□□□□□ -0.74
PDLIM3-208ENST00000512380 ADH1CP00326 375 aa10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 SOX11P35716 441 aa10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 SH3RF1Q7Z6J0 888 aa10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 MRRFQ96E11 262 aaKnown RBP10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 TRIM47Q96LD4 638 aa10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 C1QTNF2Q9BXJ5 285 aa10.4□□□□□ -0.74
PDLIM3-208ENST00000512380 NNTQ13423 1086 aa10.39□□□□□ -0.75
PDLIM3-208ENST00000512380 LRRN4Q8WUT4 740 aa10.39□□□□□ -0.75
PDLIM3-208ENST00000512380 GPKOWQ92917 476 aaPredicted RBP eCLIP10.39□□□□□ -0.75
PDLIM3-208ENST00000512380 KIAA1522Q9P206 1035 aaPredicted RBP10.39□□□□□ -0.75
PDLIM3-208ENST00000512380 CAPN5O15484 640 aaPredicted RBP10.38□□□□□ -0.75
PDLIM3-208ENST00000512380 SH3BP5LQ7L8J4 393 aa10.38□□□□□ -0.75
PDLIM3-208ENST00000512380 KIFC2Q96AC6 838 aa10.38□□□□□ -0.75
PDLIM3-208ENST00000512380 AGERQ15109 404 aa10.37□□□□□ -0.75
PDLIM3-208ENST00000512380 TXNDC2Q86VQ3 553 aa10.37□□□□□ -0.75
PDLIM3-208ENST00000512380 EPS8L1Q8TE68 723 aa10.37□□□□□ -0.75
PDLIM3-208ENST00000512380 ATP9BO43861 1147 aa10.36□□□□□ -0.75
PDLIM3-208ENST00000512380 BMP1P13497 986 aa10.35□□□□□ -0.75
PDLIM3-208ENST00000512380 SNRPBP14678 240 aaKnown RBP10.35□□□□□ -0.75
PDLIM3-208ENST00000512380 TMEM164Q5U3C3 297 aa10.35□□□□□ -0.75
PDLIM3-208ENST00000512380 TRIM46Q7Z4K8 759 aa10.35□□□□□ -0.75
PDLIM3-208ENST00000512380 TRMT44Q8IYL2 757 aaKnown RBP10.35□□□□□ -0.75
PDLIM3-208ENST00000512380 TIMP2P16035 220 aa10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 ERCC3P19447 782 aa10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 NR5A1Q13285 461 aa10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 DNAJC14Q6Y2X3 702 aaPredicted RBP10.34□□□□□ -0.75
PDLIM3-208ENST00000512380 STK32AQ8WU08 396 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms