RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 TTC21BQ7Z4L5 1316 aa19.42■□□□□ 0.7
PDLIM3-204ENST00000504011 EIF4A2Q14240 407 aaKnown RBP19.42■□□□□ 0.7
PDLIM3-204ENST00000504011 FAM135BQ49AJ0 1406 aa19.42■□□□□ 0.7
PDLIM3-204ENST00000504011 ADAMTS13Q76LX8 1427 aa19.42■□□□□ 0.7
PDLIM3-204ENST00000504011 DDRGK1Q96HY6 314 aa19.41■□□□□ 0.7
PDLIM3-204ENST00000504011 NGDNQ8NEJ9 315 aaKnown RBP19.41■□□□□ 0.7
PDLIM3-204ENST00000504011 ANKRD26Q9UPS8 1709 aa19.39■□□□□ 0.7
PDLIM3-204ENST00000504011 VAMP4O75379 141 aa19.39■□□□□ 0.7
PDLIM3-204ENST00000504011 C14orf37Q86TY3 774 aa19.39■□□□□ 0.7
PDLIM3-204ENST00000504011 DDX19BQ9UMR2 479 aa19.39■□□□□ 0.7
PDLIM3-204ENST00000504011 FOXO3O43524 673 aa19.38■□□□□ 0.69
PDLIM3-204ENST00000504011 ZNF692Q9BU19 519 aaPredicted RBP19.38■□□□□ 0.69
PDLIM3-204ENST00000504011 PTPRUQ92729 1446 aa19.38■□□□□ 0.69
PDLIM3-204ENST00000504011 TWISTNBQ3B726 338 aaPredicted RBP19.38■□□□□ 0.69
PDLIM3-204ENST00000504011 USP19O94966 1318 aa19.37■□□□□ 0.69
PDLIM3-204ENST00000504011 IL16Q14005 1332 aa19.37■□□□□ 0.69
PDLIM3-204ENST00000504011 LNPKQ9C0E8 428 aa19.37■□□□□ 0.69
PDLIM3-204ENST00000504011 SPRYD3Q8NCJ5 442 aa19.37■□□□□ 0.69
PDLIM3-204ENST00000504011 LTV1Q96GA3 475 aaPredicted RBP19.36■□□□□ 0.69
PDLIM3-204ENST00000504011 CT47B1P0C2W7 299 aaPredicted RBP19.36■□□□□ 0.69
PDLIM3-204ENST00000504011 IPO8O15397 1037 aaKnown RBP19.35■□□□□ 0.69
PDLIM3-204ENST00000504011 ZBTB40Q9NUA8 1239 aa19.35■□□□□ 0.69
PDLIM3-204ENST00000504011 KIF16BQ96L93 1317 aa19.35■□□□□ 0.69
PDLIM3-204ENST00000504011 ZBTB7CA1YPR0 619 aa19.34■□□□□ 0.69
PDLIM3-204ENST00000504011 GNAI1P63096 354 aa19.34■□□□□ 0.69
PDLIM3-204ENST00000504011 KCNA6P17658 529 aa19.34■□□□□ 0.69
PDLIM3-204ENST00000504011 UBR1Q8IWV7 1749 aa19.34■□□□□ 0.69
PDLIM3-204ENST00000504011 SLKQ9H2G2 1235 aaPredicted RBP19.33■□□□□ 0.69
PDLIM3-204ENST00000504011 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.33■□□□□ 0.69
PDLIM3-204ENST00000504011 MFAP1P55081 439 aaKnown RBP19.33■□□□□ 0.69
PDLIM3-204ENST00000504011 NCBP3Q53F19 620 aaKnown RBP19.33■□□□□ 0.69
PDLIM3-204ENST00000504011 MRPL50Q8N5N7 158 aaKnown RBP19.33■□□□□ 0.69
PDLIM3-204ENST00000504011 CDC42BPGQ6DT37 1551 aa19.33■□□□□ 0.68
PDLIM3-204ENST00000504011 IFT57Q9NWB7 429 aa19.32■□□□□ 0.68
PDLIM3-204ENST00000504011 CFAP44Q96MT7 982 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 MAP3K19Q56UN5 1328 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 AMPHP49418 695 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 NLRP6P59044 892 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 TECPR2O15040 1411 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 PLEKHG1Q9ULL1 1385 aa19.31■□□□□ 0.68
PDLIM3-204ENST00000504011 ALDH1L2Q3SY69 923 aa19.3■□□□□ 0.68
PDLIM3-204ENST00000504011 SIRT1Q96EB6 747 aa19.3■□□□□ 0.68
PDLIM3-204ENST00000504011 AATKQ6ZMQ8 1374 aa19.3■□□□□ 0.68
PDLIM3-204ENST00000504011 CDK12Q9NYV4 1490 aaPredicted RBP19.3■□□□□ 0.68
PDLIM3-204ENST00000504011 NECTIN2Q92692 538 aa19.29■□□□□ 0.68
PDLIM3-204ENST00000504011 APBB1O00213 710 aa19.29■□□□□ 0.68
PDLIM3-204ENST00000504011 ANKRD45Q5TZF3 282 aa19.29■□□□□ 0.68
PDLIM3-204ENST00000504011 PLEKHG3A1L390 1219 aa19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 ZNF853P0CG23 659 aa19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 NFKBIBQ15653 356 aa19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 THEMISQ8N1K5 641 aaPredicted RBP19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 USP6P35125 1406 aa19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 ZBTB7BO15156 539 aaPredicted RBP19.28■□□□□ 0.68
PDLIM3-204ENST00000504011 CALD1Q05682 793 aaKnown RBP19.27■□□□□ 0.68
PDLIM3-204ENST00000504011 USHBP1Q8N6Y0 703 aa19.27■□□□□ 0.67
PDLIM3-204ENST00000504011 HDAC1Q13547 482 aaPredicted RBP19.26■□□□□ 0.67
PDLIM3-204ENST00000504011 AAMPQ13685 434 aa19.26■□□□□ 0.67
PDLIM3-204ENST00000504011 MTHFSDQ2M296 383 aaKnown RBP19.26■□□□□ 0.67
PDLIM3-204ENST00000504011 UPF2Q9HAU5 1272 aaKnown RBP19.26■□□□□ 0.67
PDLIM3-204ENST00000504011 FRAT2O75474 233 aaPredicted RBP19.25■□□□□ 0.67
PDLIM3-204ENST00000504011 LMOD3Q0VAK6 560 aa19.25■□□□□ 0.67
PDLIM3-204ENST00000504011 XPCQ01831 940 aaPredicted RBP19.24■□□□□ 0.67
PDLIM3-204ENST00000504011 ABTB2Q8N961 1025 aa19.24■□□□□ 0.67
PDLIM3-204ENST00000504011 SIRT2Q8IXJ6 389 aa19.24■□□□□ 0.67
PDLIM3-204ENST00000504011 EYA1Q99502 592 aa19.24■□□□□ 0.67
PDLIM3-204ENST00000504011 TBX22Q9Y458 520 aa19.24■□□□□ 0.67
PDLIM3-204ENST00000504011 SMC5Q8IY18 1101 aa19.23■□□□□ 0.67
PDLIM3-204ENST00000504011 ITSN1Q15811 1721 aa19.23■□□□□ 0.67
PDLIM3-204ENST00000504011 C3P01024 1663 aa19.22■□□□□ 0.67
PDLIM3-204ENST00000504011 MON2Q7Z3U7 1717 aa19.22■□□□□ 0.67
PDLIM3-204ENST00000504011 DLG5Q8TDM6 1919 aa19.22■□□□□ 0.67
PDLIM3-204ENST00000504011 SLC4A10Q6U841 1118 aa19.22■□□□□ 0.67
PDLIM3-204ENST00000504011 CHD1LQ86WJ1 897 aa19.22■□□□□ 0.67
PDLIM3-204ENST00000504011 OVOS2A0A0J9YW53 1432 aa19.21■□□□□ 0.67
PDLIM3-204ENST00000504011 OVOS2Q6IE36 1432 aa19.21■□□□□ 0.67
PDLIM3-204ENST00000504011 F6X3S4 739 aa19.21■□□□□ 0.67
PDLIM3-204ENST00000504011 RTF1Q92541 710 aaKnown RBP19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 SLC4A2P04920 1241 aa19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 LMOD2Q6P5Q4 547 aa19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 RGPD8O14715 1765 aaPredicted RBP19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 NUCB1Q02818 461 aa19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 TBC1D32Q96NH3 1257 aa19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 TSPYL4Q9UJ04 414 aa19.2■□□□□ 0.66
PDLIM3-204ENST00000504011 G2E3Q7L622 706 aa19.19■□□□□ 0.66
PDLIM3-204ENST00000504011 AKAP12Q02952 1782 aa19.18■□□□□ 0.66
PDLIM3-204ENST00000504011 KNDC1Q76NI1 1749 aa19.18■□□□□ 0.66
PDLIM3-204ENST00000504011 C22orf23Q9BZE7 217 aa19.18■□□□□ 0.66
PDLIM3-204ENST00000504011 PEAK1Q9H792 1746 aa19.17■□□□□ 0.66
PDLIM3-204ENST00000504011 RIMS1Q86UR5 1692 aaKnown RBP19.17■□□□□ 0.66
PDLIM3-204ENST00000504011 CHL1O00533 1208 aa19.17■□□□□ 0.66
PDLIM3-204ENST00000504011 C16orf71Q8IYS4 520 aaPredicted RBP19.17■□□□□ 0.66
PDLIM3-204ENST00000504011 TBC1D2Q9BYX2 928 aa19.17■□□□□ 0.66
PDLIM3-204ENST00000504011 ESCO1Q5FWF5 840 aa19.16■□□□□ 0.66
PDLIM3-204ENST00000504011 ABCC4O15439 1325 aa19.16■□□□□ 0.66
PDLIM3-204ENST00000504011 ZNF428Q96B54 188 aa19.15■□□□□ 0.66
PDLIM3-204ENST00000504011 MEIS3Q99687 375 aa19.15■□□□□ 0.66
PDLIM3-204ENST00000504011 API5Q9BZZ5 524 aaKnown RBP19.15■□□□□ 0.66
PDLIM3-204ENST00000504011 SETD1BQ9UPS6 1966 aaKnown RBP19.14■□□□□ 0.65
PDLIM3-204ENST00000504011 SMARCA5O60264 1052 aaPredicted RBP19.14■□□□□ 0.65
PDLIM3-204ENST00000504011 BECN1Q14457 450 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms