RNA–Protein interactions for RNA: ENST00000502971.5

PTPN13-205, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 1 (best) BASIC

Gene PTPN13, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-205ENST00000502971 PSME1Q06323 249 aa28.68■■■□□ 2.18
PTPN13-205ENST00000502971 EIF4A2Q14240 407 aaKnown RBP28.68■■■□□ 2.18
PTPN13-205ENST00000502971 MAP3K19Q56UN5 1328 aa28.68■■■□□ 2.18
PTPN13-205ENST00000502971 MARF1Q9Y4F3 1742 aaKnown RBP28.68■■■□□ 2.18
PTPN13-205ENST00000502971 KIF24Q5T7B8 1368 aa28.67■■■□□ 2.18
PTPN13-205ENST00000502971 IL16Q14005 1332 aa28.66■■■□□ 2.18
PTPN13-205ENST00000502971 FLT4P35916 1363 aa28.66■■■□□ 2.18
PTPN13-205ENST00000502971 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.66■■■□□ 2.18
PTPN13-205ENST00000502971 SOX12O15370 315 aa28.64■■■□□ 2.18
PTPN13-205ENST00000502971 NFE2L2Q16236 605 aa28.63■■■□□ 2.17
PTPN13-205ENST00000502971 HSP90AB2PQ58FF8 381 aa28.63■■■□□ 2.17
PTPN13-205ENST00000502971 ORAI2Q96SN7 254 aa28.63■■■□□ 2.17
PTPN13-205ENST00000502971 PHACTR3Q96KR7 559 aa28.61■■■□□ 2.17
PTPN13-205ENST00000502971 RGPD1P0DJD0 1748 aa28.61■■■□□ 2.17
PTPN13-205ENST00000502971 AMPHP49418 695 aa28.6■■■□□ 2.17
PTPN13-205ENST00000502971 SLAIN2Q9P270 581 aa28.6■■■□□ 2.17
PTPN13-205ENST00000502971 PLIN1O60240 522 aa28.6■■■□□ 2.17
PTPN13-205ENST00000502971 NUTM2GQ5VZR2 741 aa28.6■■■□□ 2.17
PTPN13-205ENST00000502971 B4GALNT3Q6L9W6 998 aa28.59■■■□□ 2.17
PTPN13-205ENST00000502971 ARHGEF10O15013 1369 aa28.58■■■□□ 2.17
PTPN13-205ENST00000502971 FOXO3O43524 673 aa28.57■■■□□ 2.16
PTPN13-205ENST00000502971 SULT6B1Q6IMI4 303 aa28.57■■■□□ 2.16
PTPN13-205ENST00000502971 EXOC6Q8TAG9 804 aa28.57■■■□□ 2.16
PTPN13-205ENST00000502971 CT47B1P0C2W7 299 aaPredicted RBP28.56■■■□□ 2.16
PTPN13-205ENST00000502971 RTL1A6NKG5 1358 aa28.55■■■□□ 2.16
PTPN13-205ENST00000502971 CALD1Q05682 793 aaKnown RBP28.55■■■□□ 2.16
PTPN13-205ENST00000502971 LMOD3Q0VAK6 560 aa28.55■■■□□ 2.16
PTPN13-205ENST00000502971 KCNH5Q8NCM2 988 aa28.55■■■□□ 2.16
PTPN13-205ENST00000502971 CCDC136Q96JN2 1154 aa28.54■■■□□ 2.16
PTPN13-205ENST00000502971 FANCIQ9NVI1 1328 aa28.53■■■□□ 2.16
PTPN13-205ENST00000502971 HOXC9P31274 260 aa28.53■■■□□ 2.16
PTPN13-205ENST00000502971 TRPM3Q9HCF6 1732 aaPredicted RBP28.53■■■□□ 2.16
PTPN13-205ENST00000502971 KRT28Q7Z3Y7 464 aa28.52■■■□□ 2.16
PTPN13-205ENST00000502971 AEBP1Q8IUX7 1158 aa28.52■■■□□ 2.16
PTPN13-205ENST00000502971 NFAT5O94916 1531 aa28.51■■■□□ 2.15
PTPN13-205ENST00000502971 BCAR3O75815 825 aa28.51■■■□□ 2.15
PTPN13-205ENST00000502971 BRINP3Q76B58 766 aa28.51■■■□□ 2.15
PTPN13-205ENST00000502971 NPHP3Q7Z494 1330 aa28.51■■■□□ 2.15
PTPN13-205ENST00000502971 RARSP54136 660 aaKnown RBP28.49■■■□□ 2.15
PTPN13-205ENST00000502971 CRBNQ96SW2 442 aa28.49■■■□□ 2.15
PTPN13-205ENST00000502971 IGSF1Q8N6C5 1336 aa28.49■■■□□ 2.15
PTPN13-205ENST00000502971 KDRP35968 1356 aa28.48■■■□□ 2.15
PTPN13-205ENST00000502971 TSR2Q969E8 191 aaKnown RBP28.48■■■□□ 2.15
PTPN13-205ENST00000502971 SLIT3O75094 1523 aa28.48■■■□□ 2.15
PTPN13-205ENST00000502971 C20orf194Q5TEA3 1177 aa28.46■■■□□ 2.15
PTPN13-205ENST00000502971 EYA1Q99502 592 aa28.46■■■□□ 2.15
PTPN13-205ENST00000502971 LTN1O94822 1766 aa28.46■■■□□ 2.15
PTPN13-205ENST00000502971 DLG5Q8TDM6 1919 aa28.46■■■□□ 2.15
PTPN13-205ENST00000502971 XPCQ01831 940 aaPredicted RBP28.46■■■□□ 2.15
PTPN13-205ENST00000502971 IP6K1Q92551 441 aa28.46■■■□□ 2.15
PTPN13-205ENST00000502971 PHRF1Q9P1Y6 1649 aaKnown RBP28.45■■■□□ 2.15
PTPN13-205ENST00000502971 TOM1O60784 492 aa28.44■■■□□ 2.14
PTPN13-205ENST00000502971 USP19O94966 1318 aa28.44■■■□□ 2.14
PTPN13-205ENST00000502971 EXOSC9Q06265 439 aaKnown RBP28.43■■■□□ 2.14
PTPN13-205ENST00000502971 IFT57Q9NWB7 429 aa28.43■■■□□ 2.14
PTPN13-205ENST00000502971 GNAI1P63096 354 aa28.43■■■□□ 2.14
PTPN13-205ENST00000502971 PDE3AQ14432 1141 aa28.43■■■□□ 2.14
PTPN13-205ENST00000502971 CERKQ8TCT0 537 aa28.43■■■□□ 2.14
PTPN13-205ENST00000502971 ALS2Q96Q42 1657 aa28.42■■■□□ 2.14
PTPN13-205ENST00000502971 GCP02774 474 aa28.4■■■□□ 2.14
PTPN13-205ENST00000502971 ZNF853P0CG23 659 aa28.4■■■□□ 2.14
PTPN13-205ENST00000502971 CANXP27824 592 aaKnown RBP28.39■■■□□ 2.14
PTPN13-205ENST00000502971 LMOD2Q6P5Q4 547 aa28.38■■■□□ 2.13
PTPN13-205ENST00000502971 PXDNQ92626 1479 aa28.38■■■□□ 2.13
PTPN13-205ENST00000502971 CFAP44Q96MT7 982 aa28.38■■■□□ 2.13
PTPN13-205ENST00000502971 THUMPD2Q9BTF0 503 aaKnown RBP28.38■■■□□ 2.13
PTPN13-205ENST00000502971 ARHGEF25Q86VW2 580 aa28.37■■■□□ 2.13
PTPN13-205ENST00000502971 SOS2Q07890 1332 aaPredicted RBP28.36■■■□□ 2.13
PTPN13-205ENST00000502971 LAS1LQ9Y4W2 734 aaKnown RBP28.36■■■□□ 2.13
PTPN13-205ENST00000502971 GAS2L2Q8NHY3 880 aa28.35■■■□□ 2.13
PTPN13-205ENST00000502971 ZNF428Q96B54 188 aa28.35■■■□□ 2.13
PTPN13-205ENST00000502971 FAM83GA6ND36 823 aa28.34■■■□□ 2.13
PTPN13-205ENST00000502971 LTV1Q96GA3 475 aaPredicted RBP28.34■■■□□ 2.13
PTPN13-205ENST00000502971 FRAT1Q92837 279 aaPredicted RBP28.33■■■□□ 2.13
PTPN13-205ENST00000502971 DDX17Q92841 729 aaKnown RBP28.33■■■□□ 2.13
PTPN13-205ENST00000502971 NHSL1Q5SYE7 1610 aa28.33■■■□□ 2.13
PTPN13-205ENST00000502971 MTHFSDQ2M296 383 aaKnown RBP28.32■■■□□ 2.12
PTPN13-205ENST00000502971 ROBO1Q9Y6N7 1651 aa28.32■■■□□ 2.12
PTPN13-205ENST00000502971 MBIPQ9NS73 344 aa28.32■■■□□ 2.12
PTPN13-205ENST00000502971 TNS3Q68CZ2 1445 aa28.31■■■□□ 2.12
PTPN13-205ENST00000502971 ALDH1L2Q3SY69 923 aa28.31■■■□□ 2.12
PTPN13-205ENST00000502971 SPATA31A3Q5VYP0 1347 aa28.31■■■□□ 2.12
PTPN13-205ENST00000502971 UBAP1LF5GYI3 381 aa28.3■■■□□ 2.12
PTPN13-205ENST00000502971 DCTN1Q14203 1278 aa28.3■■■□□ 2.12
PTPN13-205ENST00000502971 BCL2L13Q9BXK5 485 aa28.3■■■□□ 2.12
PTPN13-205ENST00000502971 TSHZ2Q9NRE2 1034 aa28.3■■■□□ 2.12
PTPN13-205ENST00000502971 SMC4Q9NTJ3 1288 aa28.3■■■□□ 2.12
PTPN13-205ENST00000502971 HTATSF1O43719 755 aaKnown RBP28.29■■■□□ 2.12
PTPN13-205ENST00000502971 ZBTB7CA1YPR0 619 aa28.29■■■□□ 2.12
PTPN13-205ENST00000502971 SSH1Q8WYL5 1049 aa28.29■■■□□ 2.12
PTPN13-205ENST00000502971 MED1Q15648 1581 aaPredicted RBP28.28■■■□□ 2.12
PTPN13-205ENST00000502971 AHDC1Q5TGY3 1603 aaPredicted RBP28.28■■■□□ 2.12
PTPN13-205ENST00000502971 MS4A1P11836 297 aa28.28■■■□□ 2.12
PTPN13-205ENST00000502971 ZKSCAN2Q63HK3 967 aa28.28■■■□□ 2.12
PTPN13-205ENST00000502971 RTF1Q92541 710 aaKnown RBP28.28■■■□□ 2.12
PTPN13-205ENST00000502971 AAMPQ13685 434 aa28.26■■■□□ 2.11
PTPN13-205ENST00000502971 MCM10Q7L590 875 aa28.26■■■□□ 2.11
PTPN13-205ENST00000502971 CHL1O00533 1208 aa28.25■■■□□ 2.11
PTPN13-205ENST00000502971 VAMP4O75379 141 aa28.25■■■□□ 2.11
PTPN13-205ENST00000502971 BRPF1P55201 1214 aaPredicted RBP28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms