RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 IPO8O15397 1037 aaKnown RBP12.51□□□□□ -0.41
CLIP1-204ENST00000501271 RRS1Q15050 365 aaKnown RBP12.51□□□□□ -0.41
CLIP1-204ENST00000501271 TBC1D32Q96NH3 1257 aa12.51□□□□□ -0.41
CLIP1-204ENST00000501271 CCDC61Q9Y6R9 512 aa12.51□□□□□ -0.41
CLIP1-204ENST00000501271 PRR36Q9H6K5 1346 aa12.51□□□□□ -0.41
CLIP1-204ENST00000501271 NRKQ7Z2Y5 1582 aa12.51□□□□□ -0.41
CLIP1-204ENST00000501271 COG3Q96JB2 828 aa12.51□□□□□ -0.41
CLIP1-204ENST00000501271 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-204ENST00000501271 SMC5Q8IY18 1101 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 TOPAZ1Q8N9V7 1692 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 ROBO2Q9HCK4 1378 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 TMEM2Q9UHN6 1383 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 TSPYL6Q8N831 410 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 SIRT1Q96EB6 747 aa12.5□□□□□ -0.41
CLIP1-204ENST00000501271 VAMP4O75379 141 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 FRAT2O75474 233 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-204ENST00000501271 BRPF1P55201 1214 aaPredicted RBP12.49□□□□□ -0.41
CLIP1-204ENST00000501271 UPF2Q9HAU5 1272 aaKnown RBP12.49□□□□□ -0.41
CLIP1-204ENST00000501271 ADAMTS13Q76LX8 1427 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 ZNF853P0CG23 659 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 ZNF428Q96B54 188 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 MBIPQ9NS73 344 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 IFT57Q9NWB7 429 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 PTCH1Q13635 1447 aa12.49□□□□□ -0.41
CLIP1-204ENST00000501271 BECN1Q14457 450 aa12.48□□□□□ -0.41
CLIP1-204ENST00000501271 GNAI1P63096 354 aa12.48□□□□□ -0.41
CLIP1-204ENST00000501271 CALD1Q05682 793 aaKnown RBP12.48□□□□□ -0.41
CLIP1-204ENST00000501271 MRPL50Q8N5N7 158 aaKnown RBP12.48□□□□□ -0.41
CLIP1-204ENST00000501271 HDGFP51858 240 aaKnown RBP12.47□□□□□ -0.41
CLIP1-204ENST00000501271 PIK3R4Q99570 1358 aa12.47□□□□□ -0.41
CLIP1-204ENST00000501271 FAM83GA6ND36 823 aa12.47□□□□□ -0.41
CLIP1-204ENST00000501271 NALCNQ8IZF0 1738 aa12.46□□□□□ -0.41
CLIP1-204ENST00000501271 ELL2O00472 640 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-204ENST00000501271 GSE1Q14687 1217 aa12.46□□□□□ -0.41
CLIP1-204ENST00000501271 ZNF692Q9BU19 519 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-204ENST00000501271 SLKQ9H2G2 1235 aaPredicted RBP12.46□□□□□ -0.42
CLIP1-204ENST00000501271 PEAK1Q9H792 1746 aa12.46□□□□□ -0.42
CLIP1-204ENST00000501271 ZBTB7BO15156 539 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-204ENST00000501271 NUCB1Q02818 461 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 CFAP44Q96MT7 982 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 TBC1D2Q9BYX2 928 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 OVOS2A0A0J9YW53 1432 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 OVOS2Q6IE36 1432 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 LMOD3Q0VAK6 560 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 DCTN1Q14203 1278 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 TWISTNBQ3B726 338 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-204ENST00000501271 C8orf58Q8NAV2 365 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 ARHGAP45Q92619 1136 aa12.45□□□□□ -0.42
CLIP1-204ENST00000501271 ABCC4O15439 1325 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 LTKP29376 864 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 MFAP1P55081 439 aaKnown RBP12.44□□□□□ -0.42
CLIP1-204ENST00000501271 AEBP1Q8IUX7 1158 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 C1orf115Q9H7X2 142 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 TTC21BQ7Z4L5 1316 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 RGPD1P0DJD0 1748 aa12.44□□□□□ -0.42
CLIP1-204ENST00000501271 NUTM2FA1L443 756 aa12.43□□□□□ -0.42
CLIP1-204ENST00000501271 EIF4A2Q14240 407 aaKnown RBP12.43□□□□□ -0.42
CLIP1-204ENST00000501271 ANTXR1Q9H6X2 564 aa12.43□□□□□ -0.42
CLIP1-204ENST00000501271 PLEKHG1Q9ULL1 1385 aa12.43□□□□□ -0.42
CLIP1-204ENST00000501271 ACEP12821 1306 aa12.43□□□□□ -0.42
CLIP1-204ENST00000501271 C22orf23Q9BZE7 217 aa12.43□□□□□ -0.42
CLIP1-204ENST00000501271 USP6P35125 1406 aa12.42□□□□□ -0.42
CLIP1-204ENST00000501271 CHD1LQ86WJ1 897 aa12.42□□□□□ -0.42
CLIP1-204ENST00000501271 PTPRUQ92729 1446 aa12.42□□□□□ -0.42
CLIP1-204ENST00000501271 SULT6B1Q6IMI4 303 aa12.41□□□□□ -0.42
CLIP1-204ENST00000501271 FMN2Q9NZ56 1722 aa12.41□□□□□ -0.42
CLIP1-204ENST00000501271 PLEKHG3A1L390 1219 aa12.4□□□□□ -0.42
CLIP1-204ENST00000501271 SIRT2Q8IXJ6 389 aa12.4□□□□□ -0.42
CLIP1-204ENST00000501271 RGPD8O14715 1765 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-204ENST00000501271 RIMS1Q86UR5 1692 aaKnown RBP12.39□□□□□ -0.43
CLIP1-204ENST00000501271 CEBPAP49715 358 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-204ENST00000501271 HSP90AB2PQ58FF8 381 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 SLC26A8Q96RN1 970 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 CHMP4BQ9H444 224 aaKnown RBP12.39□□□□□ -0.43
CLIP1-204ENST00000501271 SSH2Q76I76 1423 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 USP31Q70CQ4 1352 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 KRT24Q2M2I5 525 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 ANKRD45Q5TZF3 282 aa12.39□□□□□ -0.43
CLIP1-204ENST00000501271 IL27Q8NEV9 243 aa12.38□□□□□ -0.43
CLIP1-204ENST00000501271 API5Q9BZZ5 524 aaKnown RBP12.38□□□□□ -0.43
CLIP1-204ENST00000501271 MCM10Q7L590 875 aa12.38□□□□□ -0.43
CLIP1-204ENST00000501271 SPRYD3Q8NCJ5 442 aa12.38□□□□□ -0.43
CLIP1-204ENST00000501271 RGS12O14924 1447 aa12.37□□□□□ -0.43
CLIP1-204ENST00000501271 SOX12O15370 315 aa12.37□□□□□ -0.43
CLIP1-204ENST00000501271 BMP2KLQ5H9B9 411 aa12.37□□□□□ -0.43
CLIP1-204ENST00000501271 SLIT1O75093 1534 aa12.37□□□□□ -0.43
CLIP1-204ENST00000501271 CHL1O00533 1208 aa12.36□□□□□ -0.43
CLIP1-204ENST00000501271 DIP2AQ14689 1571 aa12.36□□□□□ -0.43
CLIP1-204ENST00000501271 ARHGAP23Q9P227 1491 aa12.36□□□□□ -0.43
CLIP1-204ENST00000501271 PIK3C2AO00443 1686 aa12.35□□□□□ -0.43
CLIP1-204ENST00000501271 RBM25P49756 843 aaKnown RBP12.35□□□□□ -0.43
CLIP1-204ENST00000501271 AMOTL2Q9Y2J4 779 aa12.35□□□□□ -0.43
CLIP1-204ENST00000501271 KIF24Q5T7B8 1368 aa12.35□□□□□ -0.43
CLIP1-204ENST00000501271 MAP3K19Q56UN5 1328 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 CRB1P82279 1406 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 FER1L4A9Z1Z3 1794 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 BRPF3Q9ULD4 1205 aa12.34□□□□□ -0.43
CLIP1-204ENST00000501271 EID1Q9Y6B2 187 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms