RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NFKBIBQ15653 356 aa14.21□□□□□ -0.13
CHMP3-209ENST00000494623 GNAI1P63096 354 aa14.21□□□□□ -0.13
CHMP3-209ENST00000494623 AATKQ6ZMQ8 1374 aa14.21□□□□□ -0.13
CHMP3-209ENST00000494623 CDC42BPGQ6DT37 1551 aa14.21□□□□□ -0.14
CHMP3-209ENST00000494623 FAM83GA6ND36 823 aa14.21□□□□□ -0.14
CHMP3-209ENST00000494623 SLC26A8Q96RN1 970 aa14.21□□□□□ -0.14
CHMP3-209ENST00000494623 UPF2Q9HAU5 1272 aaKnown RBP14.21□□□□□ -0.14
CHMP3-209ENST00000494623 MBIPQ9NS73 344 aa14.2□□□□□ -0.14
CHMP3-209ENST00000494623 IFT57Q9NWB7 429 aa14.2□□□□□ -0.14
CHMP3-209ENST00000494623 DCTN1Q14203 1278 aa14.2□□□□□ -0.14
CHMP3-209ENST00000494623 TECPR2O15040 1411 aa14.19□□□□□ -0.14
CHMP3-209ENST00000494623 ACEP12821 1306 aa14.19□□□□□ -0.14
CHMP3-209ENST00000494623 KIF13AQ9H1H9 1805 aa14.19□□□□□ -0.14
CHMP3-209ENST00000494623 MRPL50Q8N5N7 158 aaKnown RBP14.19□□□□□ -0.14
CHMP3-209ENST00000494623 ZNF428Q96B54 188 aa14.19□□□□□ -0.14
CHMP3-209ENST00000494623 CDK12Q9NYV4 1490 aaPredicted RBP14.18□□□□□ -0.14
CHMP3-209ENST00000494623 SOX12O15370 315 aa14.18□□□□□ -0.14
CHMP3-209ENST00000494623 TTC21BQ7Z4L5 1316 aa14.18□□□□□ -0.14
CHMP3-209ENST00000494623 ZNF853P0CG23 659 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 LMOD3Q0VAK6 560 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 SULT6B1Q6IMI4 303 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 AEBP1Q8IUX7 1158 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 SMC5Q8IY18 1101 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 C8orf58Q8NAV2 365 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 BECN1Q14457 450 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 TWISTNBQ3B726 338 aaPredicted RBP14.17□□□□□ -0.14
CHMP3-209ENST00000494623 CFAP44Q96MT7 982 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 ADAMTS13Q76LX8 1427 aa14.17□□□□□ -0.14
CHMP3-209ENST00000494623 BRPF1P55201 1214 aaPredicted RBP14.16□□□□□ -0.14
CHMP3-209ENST00000494623 EIF4A2Q14240 407 aaKnown RBP14.16□□□□□ -0.14
CHMP3-209ENST00000494623 VIRMAQ69YN4 1812 aaKnown RBP14.15□□□□□ -0.14
CHMP3-209ENST00000494623 ZBTB7BO15156 539 aaPredicted RBP14.15□□□□□ -0.14
CHMP3-209ENST00000494623 TBC1D32Q96NH3 1257 aa14.15□□□□□ -0.14
CHMP3-209ENST00000494623 C1orf115Q9H7X2 142 aa14.15□□□□□ -0.14
CHMP3-209ENST00000494623 EID1Q9Y6B2 187 aa14.15□□□□□ -0.14
CHMP3-209ENST00000494623 PLEKHG3A1L390 1219 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 LNPKQ9C0E8 428 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 HSP90AB2PQ58FF8 381 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 ARHGAP45Q92619 1136 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 AMOTL2Q9Y2J4 779 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 KNDC1Q76NI1 1749 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 UBR1Q8IWV7 1749 aa14.14□□□□□ -0.15
CHMP3-209ENST00000494623 FRAT2O75474 233 aaPredicted RBP14.14□□□□□ -0.15
CHMP3-209ENST00000494623 MFAP1P55081 439 aaKnown RBP14.14□□□□□ -0.15
CHMP3-209ENST00000494623 PLEKHG1Q9ULL1 1385 aa14.13□□□□□ -0.15
CHMP3-209ENST00000494623 MON2Q7Z3U7 1717 aa14.13□□□□□ -0.15
CHMP3-209ENST00000494623 NUCB1Q02818 461 aa14.13□□□□□ -0.15
CHMP3-209ENST00000494623 SLKQ9H2G2 1235 aaPredicted RBP14.12□□□□□ -0.15
CHMP3-209ENST00000494623 ANKRD45Q5TZF3 282 aa14.12□□□□□ -0.15
CHMP3-209ENST00000494623 CHD1LQ86WJ1 897 aa14.12□□□□□ -0.15
CHMP3-209ENST00000494623 C3P01024 1663 aa14.11□□□□□ -0.15
CHMP3-209ENST00000494623 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.11□□□□□ -0.15
CHMP3-209ENST00000494623 MCM10Q7L590 875 aa14.11□□□□□ -0.15
CHMP3-209ENST00000494623 CHMP4BQ9H444 224 aaKnown RBP14.11□□□□□ -0.15
CHMP3-209ENST00000494623 C22orf23Q9BZE7 217 aa14.11□□□□□ -0.15
CHMP3-209ENST00000494623 ITSN1Q15811 1721 aa14.11□□□□□ -0.15
CHMP3-209ENST00000494623 AKAP12Q02952 1782 aa14.11□□□□□ -0.15
CHMP3-209ENST00000494623 PTPRUQ92729 1446 aa14.1□□□□□ -0.15
CHMP3-209ENST00000494623 KRT24Q2M2I5 525 aa14.1□□□□□ -0.15
CHMP3-209ENST00000494623 TBC1D2Q9BYX2 928 aa14.1□□□□□ -0.15
CHMP3-209ENST00000494623 API5Q9BZZ5 524 aaKnown RBP14.1□□□□□ -0.15
CHMP3-209ENST00000494623 USP6P35125 1406 aa14.1□□□□□ -0.15
CHMP3-209ENST00000494623 NGDNQ8NEJ9 315 aaKnown RBP14.09□□□□□ -0.15
CHMP3-209ENST00000494623 GSE1Q14687 1217 aa14.09□□□□□ -0.15
CHMP3-209ENST00000494623 SPRYD3Q8NCJ5 442 aa14.08□□□□□ -0.15
CHMP3-209ENST00000494623 ABCC4O15439 1325 aa14.08□□□□□ -0.15
CHMP3-209ENST00000494623 PTCH1Q13635 1447 aa14.08□□□□□ -0.15
CHMP3-209ENST00000494623 SIRT2Q8IXJ6 389 aa14.08□□□□□ -0.16
CHMP3-209ENST00000494623 DLG5Q8TDM6 1919 aa14.08□□□□□ -0.16
CHMP3-209ENST00000494623 GCC1Q96CN9 775 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 TBX22Q9Y458 520 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 OVOS2A0A0J9YW53 1432 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 OVOS2Q6IE36 1432 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 PIK3R4Q99570 1358 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 MAP3K19Q56UN5 1328 aa14.07□□□□□ -0.16
CHMP3-209ENST00000494623 CHL1O00533 1208 aa14.06□□□□□ -0.16
CHMP3-209ENST00000494623 MIS18AQ9NYP9 233 aa14.06□□□□□ -0.16
CHMP3-209ENST00000494623 FOXO3O43524 673 aa14.06□□□□□ -0.16
CHMP3-209ENST00000494623 THEMISQ8N1K5 641 aaPredicted RBP14.06□□□□□ -0.16
CHMP3-209ENST00000494623 AMPHP49418 695 aa14.05□□□□□ -0.16
CHMP3-209ENST00000494623 USP31Q70CQ4 1352 aa14.04□□□□□ -0.16
CHMP3-209ENST00000494623 NUTM2GQ5VZR2 741 aa14.04□□□□□ -0.16
CHMP3-209ENST00000494623 MTHFSDQ2M296 383 aaKnown RBP14.04□□□□□ -0.16
CHMP3-209ENST00000494623 ANTXR1Q9H6X2 564 aa14.04□□□□□ -0.16
CHMP3-209ENST00000494623 TTC21AQ8NDW8 1320 aa14.03□□□□□ -0.16
CHMP3-209ENST00000494623 SSH2Q76I76 1423 aa14.03□□□□□ -0.16
CHMP3-209ENST00000494623 NLRP6P59044 892 aa14.03□□□□□ -0.16
CHMP3-209ENST00000494623 RTF1Q92541 710 aaKnown RBP14.03□□□□□ -0.16
CHMP3-209ENST00000494623 HAP1P54257 671 aaPredicted RBP14.02□□□□□ -0.16
CHMP3-209ENST00000494623 BMP2KLQ5H9B9 411 aa14.02□□□□□ -0.16
CHMP3-209ENST00000494623 NRKQ7Z2Y5 1582 aa14.02□□□□□ -0.17
CHMP3-209ENST00000494623 EYA1Q99502 592 aa14.02□□□□□ -0.17
CHMP3-209ENST00000494623 PEAK1Q9H792 1746 aa14.02□□□□□ -0.17
CHMP3-209ENST00000494623 TOPAZ1Q8N9V7 1692 aa14.01□□□□□ -0.17
CHMP3-209ENST00000494623 SLC4A2P04920 1241 aa14.01□□□□□ -0.17
CHMP3-209ENST00000494623 INTS3Q68E01 1043 aaKnown RBP14.01□□□□□ -0.17
CHMP3-209ENST00000494623 KCNA6P17658 529 aa14□□□□□ -0.17
CHMP3-209ENST00000494623 TSPYL4Q9UJ04 414 aa14□□□□□ -0.17
CHMP3-209ENST00000494623 SBNO1A3KN83 1393 aa14□□□□□ -0.17
CHMP3-209ENST00000494623 FLT4P35916 1363 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms