RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZKSCAN2Q63HK3 967 aa27.14■■□□□ 1.93
CCDC88B-208ENST00000492980 SMC4Q9NTJ3 1288 aa27.14■■□□□ 1.93
CCDC88B-208ENST00000492980 CHD2O14647 1828 aaKnown RBP27.14■■□□□ 1.93
CCDC88B-208ENST00000492980 IGHDP01880 384 aa27.13■■□□□ 1.93
CCDC88B-208ENST00000492980 EIF4A2Q14240 407 aaKnown RBP27.13■■□□□ 1.93
CCDC88B-208ENST00000492980 SSH1Q8WYL5 1049 aa27.13■■□□□ 1.93
CCDC88B-208ENST00000492980 PIK3C2AO00443 1686 aa27.12■■□□□ 1.93
CCDC88B-208ENST00000492980 RGPD1P0DJD0 1748 aa27.11■■□□□ 1.93
CCDC88B-208ENST00000492980 NGDNQ8NEJ9 315 aaKnown RBP27.11■■□□□ 1.93
CCDC88B-208ENST00000492980 ANKLE2Q86XL3 938 aa27.11■■□□□ 1.93
CCDC88B-208ENST00000492980 CALD1Q05682 793 aaKnown RBP27.1■■□□□ 1.93
CCDC88B-208ENST00000492980 ANP32AP39687 249 aaKnown RBP27.1■■□□□ 1.93
CCDC88B-208ENST00000492980 THUMPD2Q9BTF0 503 aaKnown RBP27.09■■□□□ 1.93
CCDC88B-208ENST00000492980 MVPQ14764 893 aaKnown RBP27.08■■□□□ 1.93
CCDC88B-208ENST00000492980 DZIP1LQ8IYY4 767 aaKnown RBP27.08■■□□□ 1.93
CCDC88B-208ENST00000492980 LMOD3Q0VAK6 560 aa27.07■■□□□ 1.92
CCDC88B-208ENST00000492980 IFT57Q9NWB7 429 aa27.06■■□□□ 1.92
CCDC88B-208ENST00000492980 LAS1LQ9Y4W2 734 aaKnown RBP27.06■■□□□ 1.92
CCDC88B-208ENST00000492980 SETD1BQ9UPS6 1966 aaKnown RBP27.06■■□□□ 1.92
CCDC88B-208ENST00000492980 HSP90AB2PQ58FF8 381 aa27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 AEBP1Q8IUX7 1158 aa27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 FTSJ3Q8IY81 847 aaKnown RBP27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 ZNF853P0CG23 659 aa27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 TRIM27P14373 513 aa27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 ALDH1L2Q3SY69 923 aa27.05■■□□□ 1.92
CCDC88B-208ENST00000492980 GNAI1P63096 354 aa27.04■■□□□ 1.92
CCDC88B-208ENST00000492980 SULT6B1Q6IMI4 303 aa27.04■■□□□ 1.92
CCDC88B-208ENST00000492980 PCDHB15Q9Y5E8 787 aa27.04■■□□□ 1.92
CCDC88B-208ENST00000492980 MAP3K19Q56UN5 1328 aa27.04■■□□□ 1.92
CCDC88B-208ENST00000492980 MARF1Q9Y4F3 1742 aaKnown RBP27.03■■□□□ 1.92
CCDC88B-208ENST00000492980 SOX12O15370 315 aa27.03■■□□□ 1.92
CCDC88B-208ENST00000492980 ATF7IPQ6VMQ6 1270 aa27.03■■□□□ 1.92
CCDC88B-208ENST00000492980 NOB1Q9ULX3 412 aaKnown RBP27.03■■□□□ 1.92
CCDC88B-208ENST00000492980 USP54Q70EL1 1684 aa27.03■■□□□ 1.92
CCDC88B-208ENST00000492980 KIF16BQ96L93 1317 aa27.02■■□□□ 1.92
CCDC88B-208ENST00000492980 ZNF428Q96B54 188 aa27.02■■□□□ 1.92
CCDC88B-208ENST00000492980 SBNO1A3KN83 1393 aa27.02■■□□□ 1.92
CCDC88B-208ENST00000492980 RGS3P49796 1198 aa27.01■■□□□ 1.91
CCDC88B-208ENST00000492980 IPO9Q96P70 1041 aaKnown RBP27.01■■□□□ 1.91
CCDC88B-208ENST00000492980 FLT4P35916 1363 aa27■■□□□ 1.91
CCDC88B-208ENST00000492980 MBIPQ9NS73 344 aa27■■□□□ 1.91
CCDC88B-208ENST00000492980 ARHGEF10O15013 1369 aa26.99■■□□□ 1.91
CCDC88B-208ENST00000492980 FAM83GA6ND36 823 aa26.99■■□□□ 1.91
CCDC88B-208ENST00000492980 BRPF1P55201 1214 aaPredicted RBP26.98■■□□□ 1.91
CCDC88B-208ENST00000492980 ERICH6Q7L0X2 663 aa26.98■■□□□ 1.91
CCDC88B-208ENST00000492980 CFAP44Q96MT7 982 aa26.98■■□□□ 1.91
CCDC88B-208ENST00000492980 IPO8O15397 1037 aaKnown RBP26.97■■□□□ 1.91
CCDC88B-208ENST00000492980 VAMP4O75379 141 aa26.97■■□□□ 1.91
CCDC88B-208ENST00000492980 FAM161AQ3B820 660 aa26.96■■□□□ 1.91
CCDC88B-208ENST00000492980 NPM2Q86SE8 214 aaKnown RBP26.96■■□□□ 1.91
CCDC88B-208ENST00000492980 NOP58Q9Y2X3 529 aaKnown RBP26.96■■□□□ 1.91
CCDC88B-208ENST00000492980 DDX19BQ9UMR2 479 aa26.95■■□□□ 1.91
CCDC88B-208ENST00000492980 NPHP4O75161 1426 aaPredicted RBP26.95■■□□□ 1.9
CCDC88B-208ENST00000492980 NLRP6P59044 892 aa26.95■■□□□ 1.9
CCDC88B-208ENST00000492980 DCTN1Q14203 1278 aa26.95■■□□□ 1.9
CCDC88B-208ENST00000492980 C8orf34Q49A92 452 aa26.95■■□□□ 1.9
CCDC88B-208ENST00000492980 TSPYL6Q8N831 410 aa26.95■■□□□ 1.9
CCDC88B-208ENST00000492980 ITPRIPQ8IWB1 547 aa26.94■■□□□ 1.9
CCDC88B-208ENST00000492980 ADGRL3Q9HAR2 1447 aa26.94■■□□□ 1.9
CCDC88B-208ENST00000492980 TMEM57Q8N5G2 664 aa26.93■■□□□ 1.9
CCDC88B-208ENST00000492980 RWDD1Q9H446 243 aaPredicted RBP26.93■■□□□ 1.9
CCDC88B-208ENST00000492980 AMPHP49418 695 aa26.92■■□□□ 1.9
CCDC88B-208ENST00000492980 MRPL50Q8N5N7 158 aaKnown RBP26.92■■□□□ 1.9
CCDC88B-208ENST00000492980 PHF8Q9UPP1 1060 aa26.92■■□□□ 1.9
CCDC88B-208ENST00000492980 KDRP35968 1356 aa26.91■■□□□ 1.9
CCDC88B-208ENST00000492980 RBM33Q96EV2 1170 aaKnown RBP26.9■■□□□ 1.9
CCDC88B-208ENST00000492980 VIRMAQ69YN4 1812 aaKnown RBP26.9■■□□□ 1.9
CCDC88B-208ENST00000492980 TWISTNBQ3B726 338 aaPredicted RBP26.9■■□□□ 1.9
CCDC88B-208ENST00000492980 KIF24Q5T7B8 1368 aa26.89■■□□□ 1.9
CCDC88B-208ENST00000492980 C8orf58Q8NAV2 365 aa26.89■■□□□ 1.9
CCDC88B-208ENST00000492980 IGSF1Q8N6C5 1336 aa26.89■■□□□ 1.89
CCDC88B-208ENST00000492980 PAK3O75914 559 aaPredicted RBP26.89■■□□□ 1.89
CCDC88B-208ENST00000492980 NUTM2GQ5VZR2 741 aa26.89■■□□□ 1.89
CCDC88B-208ENST00000492980 ABTB2Q8N961 1025 aa26.88■■□□□ 1.89
CCDC88B-208ENST00000492980 ELL2O00472 640 aaPredicted RBP26.87■■□□□ 1.89
CCDC88B-208ENST00000492980 ARHGAP45Q92619 1136 aa26.87■■□□□ 1.89
CCDC88B-208ENST00000492980 EYA1Q99502 592 aa26.86■■□□□ 1.89
CCDC88B-208ENST00000492980 NWD1Q149M9 1564 aa26.86■■□□□ 1.89
CCDC88B-208ENST00000492980 ZBTB40Q9NUA8 1239 aa26.86■■□□□ 1.89
CCDC88B-208ENST00000492980 MCM10Q7L590 875 aa26.85■■□□□ 1.89
CCDC88B-208ENST00000492980 PDZRN3Q9UPQ7 1066 aa26.85■■□□□ 1.89
CCDC88B-208ENST00000492980 HOXC9P31274 260 aa26.84■■□□□ 1.89
CCDC88B-208ENST00000492980 HDAC1Q13547 482 aaPredicted RBP26.84■■□□□ 1.89
CCDC88B-208ENST00000492980 ZBTB47Q9UFB7 747 aaPredicted RBP26.84■■□□□ 1.89
CCDC88B-208ENST00000492980 MYT1Q01538 1121 aa26.84■■□□□ 1.89
CCDC88B-208ENST00000492980 CHL1O00533 1208 aa26.83■■□□□ 1.89
CCDC88B-208ENST00000492980 CRB1P82279 1406 aa26.83■■□□□ 1.89
CCDC88B-208ENST00000492980 MTHFSDQ2M296 383 aaKnown RBP26.82■■□□□ 1.88
CCDC88B-208ENST00000492980 LTN1O94822 1766 aa26.82■■□□□ 1.88
CCDC88B-208ENST00000492980 FOXO3O43524 673 aa26.8■■□□□ 1.88
CCDC88B-208ENST00000492980 RTL1A6NKG5 1358 aa26.79■■□□□ 1.88
CCDC88B-208ENST00000492980 ESCO1Q5FWF5 840 aa26.79■■□□□ 1.88
CCDC88B-208ENST00000492980 C14orf37Q86TY3 774 aa26.79■■□□□ 1.88
CCDC88B-208ENST00000492980 ABCC4O15439 1325 aa26.79■■□□□ 1.88
CCDC88B-208ENST00000492980 NFAT5O94916 1531 aa26.79■■□□□ 1.88
CCDC88B-208ENST00000492980 DNAJC5Q9H3Z4 198 aa26.78■■□□□ 1.88
CCDC88B-208ENST00000492980 KIAA0232Q92628 1395 aa26.78■■□□□ 1.88
CCDC88B-208ENST00000492980 GAS2L2Q8NHY3 880 aa26.77■■□□□ 1.88
CCDC88B-208ENST00000492980 PSME1Q06323 249 aa26.75■■□□□ 1.87
CCDC88B-208ENST00000492980 LRRC37A3O60309 1634 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms