RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 SLAIN2Q9P270 581 aa18.27■□□□□ 0.51
SMPD4-219ENST00000491128 TRIM35Q9UPQ4 493 aa18.26■□□□□ 0.51
SMPD4-219ENST00000491128 IQSEC2Q5JU85 1478 aa18.26■□□□□ 0.51
SMPD4-219ENST00000491128 GCP02774 474 aa18.26■□□□□ 0.51
SMPD4-219ENST00000491128 HOXC9P31274 260 aa18.26■□□□□ 0.51
SMPD4-219ENST00000491128 ZC3H6P61129 1189 aaKnown RBP18.26■□□□□ 0.51
SMPD4-219ENST00000491128 USHBP1Q8N6Y0 703 aa18.26■□□□□ 0.51
SMPD4-219ENST00000491128 TSR2Q969E8 191 aaKnown RBP18.24■□□□□ 0.51
SMPD4-219ENST00000491128 EYA1Q99502 592 aa18.24■□□□□ 0.51
SMPD4-219ENST00000491128 SBNO1A3KN83 1393 aa18.23■□□□□ 0.51
SMPD4-219ENST00000491128 FLT4P35916 1363 aa18.23■□□□□ 0.51
SMPD4-219ENST00000491128 FAM83GA6ND36 823 aa18.23■□□□□ 0.51
SMPD4-219ENST00000491128 DCTN1Q14203 1278 aa18.23■□□□□ 0.51
SMPD4-219ENST00000491128 PHF23Q9BUL5 403 aaPredicted RBP18.22■□□□□ 0.51
SMPD4-219ENST00000491128 E9PSI1 815 aa18.22■□□□□ 0.51
SMPD4-219ENST00000491128 NEFMP07197 916 aa18.22■□□□□ 0.51
SMPD4-219ENST00000491128 LAS1LQ9Y4W2 734 aaKnown RBP18.22■□□□□ 0.51
SMPD4-219ENST00000491128 XIRP1Q702N8 1843 aaKnown RBP18.21■□□□□ 0.51
SMPD4-219ENST00000491128 TRMT2AQ8IZ69 625 aaKnown RBP18.21■□□□□ 0.51
SMPD4-219ENST00000491128 NCOA3Q9Y6Q9 1424 aa18.2■□□□□ 0.5
SMPD4-219ENST00000491128 LRRC59Q96AG4 307 aaKnown RBP18.2■□□□□ 0.5
SMPD4-219ENST00000491128 DCCP43146 1447 aa18.2■□□□□ 0.5
SMPD4-219ENST00000491128 AXIN2Q9Y2T1 843 aa18.2■□□□□ 0.5
SMPD4-219ENST00000491128 NPHP3Q7Z494 1330 aa18.2■□□□□ 0.5
SMPD4-219ENST00000491128 MARF1Q9Y4F3 1742 aaKnown RBP18.19■□□□□ 0.5
SMPD4-219ENST00000491128 RRP1P56182 461 aaKnown RBP18.19■□□□□ 0.5
SMPD4-219ENST00000491128 PNNQ9H307 717 aaKnown RBP18.19■□□□□ 0.5
SMPD4-219ENST00000491128 BCAR3O75815 825 aa18.18■□□□□ 0.5
SMPD4-219ENST00000491128 NFE2L2Q16236 605 aa18.18■□□□□ 0.5
SMPD4-219ENST00000491128 CHRNA2Q15822 529 aa18.18■□□□□ 0.5
SMPD4-219ENST00000491128 KCNH5Q8NCM2 988 aa18.18■□□□□ 0.5
SMPD4-219ENST00000491128 CCDC27Q2M243 656 aa18.17■□□□□ 0.5
SMPD4-219ENST00000491128 BCL2L13Q9BXK5 485 aa18.17■□□□□ 0.5
SMPD4-219ENST00000491128 WDR63Q8IWG1 891 aa18.17■□□□□ 0.5
SMPD4-219ENST00000491128 C20orf194Q5TEA3 1177 aa18.16■□□□□ 0.5
SMPD4-219ENST00000491128 ARHGEF25Q86VW2 580 aa18.16■□□□□ 0.5
SMPD4-219ENST00000491128 IP6K1Q92551 441 aa18.16■□□□□ 0.5
SMPD4-219ENST00000491128 NBPF6Q5VWK0 638 aa18.16■□□□□ 0.5
SMPD4-219ENST00000491128 NBPF4Q96M43 638 aa18.16■□□□□ 0.5
SMPD4-219ENST00000491128 RNF123Q5XPI4 1314 aa18.15■□□□□ 0.5
SMPD4-219ENST00000491128 MCM10Q7L590 875 aa18.15■□□□□ 0.5
SMPD4-219ENST00000491128 NGEFQ8N5V2 710 aa18.15■□□□□ 0.5
SMPD4-219ENST00000491128 MTHFSDQ2M296 383 aaKnown RBP18.14■□□□□ 0.49
SMPD4-219ENST00000491128 NFAT5O94916 1531 aa18.14■□□□□ 0.49
SMPD4-219ENST00000491128 SPATA31A3Q5VYP0 1347 aa18.13■□□□□ 0.49
SMPD4-219ENST00000491128 B4GALNT3Q6L9W6 998 aa18.13■□□□□ 0.49
SMPD4-219ENST00000491128 FANCIQ9NVI1 1328 aa18.13■□□□□ 0.49
SMPD4-219ENST00000491128 USP19O94966 1318 aa18.12■□□□□ 0.49
SMPD4-219ENST00000491128 IGSF1Q8N6C5 1336 aa18.12■□□□□ 0.49
SMPD4-219ENST00000491128 TRPM3Q9HCF6 1732 aaPredicted RBP18.12■□□□□ 0.49
SMPD4-219ENST00000491128 EXOSC9Q06265 439 aaKnown RBP18.12■□□□□ 0.49
SMPD4-219ENST00000491128 EXOC6Q8TAG9 804 aa18.12■□□□□ 0.49
SMPD4-219ENST00000491128 ANKRD24Q8TF21 1146 aa18.11■□□□□ 0.49
SMPD4-219ENST00000491128 PXDNQ92626 1479 aa18.11■□□□□ 0.49
SMPD4-219ENST00000491128 ELL2O00472 640 aaPredicted RBP18.11■□□□□ 0.49
SMPD4-219ENST00000491128 KIF1AQ12756 1690 aa18.11■□□□□ 0.49
SMPD4-219ENST00000491128 MYH16Q9H6N6 1097 aa18.1■□□□□ 0.49
SMPD4-219ENST00000491128 MED1Q15648 1581 aaPredicted RBP18.1■□□□□ 0.49
SMPD4-219ENST00000491128 TNS3Q68CZ2 1445 aa18.1■□□□□ 0.49
SMPD4-219ENST00000491128 MIS18AQ9NYP9 233 aa18.09■□□□□ 0.49
SMPD4-219ENST00000491128 ARHGEF10O15013 1369 aa18.09■□□□□ 0.49
SMPD4-219ENST00000491128 FRAT1Q92837 279 aaPredicted RBP18.09■□□□□ 0.49
SMPD4-219ENST00000491128 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.49
SMPD4-219ENST00000491128 LTN1O94822 1766 aa18.08■□□□□ 0.48
SMPD4-219ENST00000491128 PIP4K2BP78356 416 aa18.08■□□□□ 0.48
SMPD4-219ENST00000491128 TCERG1O14776 1098 aaKnown RBP18.07■□□□□ 0.48
SMPD4-219ENST00000491128 TNNQ9UQP3 1299 aa18.07■□□□□ 0.48
SMPD4-219ENST00000491128 SOS2Q07890 1332 aaPredicted RBP18.07■□□□□ 0.48
SMPD4-219ENST00000491128 KIAA0232Q92628 1395 aa18.07■□□□□ 0.48
SMPD4-219ENST00000491128 CRBNQ96SW2 442 aa18.06■□□□□ 0.48
SMPD4-219ENST00000491128 SLIT3O75094 1523 aa18.06■□□□□ 0.48
SMPD4-219ENST00000491128 RTL1A6NKG5 1358 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 KDRP35968 1356 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 RARSP54136 660 aaKnown RBP18.05■□□□□ 0.48
SMPD4-219ENST00000491128 MBIPQ9NS73 344 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 KRT24Q2M2I5 525 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 TSPYL6Q8N831 410 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 NLRP2Q9NX02 1062 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 RGPD1P0DJD0 1748 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 ALS2Q96Q42 1657 aa18.05■□□□□ 0.48
SMPD4-219ENST00000491128 KIF24Q5T7B8 1368 aa18.04■□□□□ 0.48
SMPD4-219ENST00000491128 CSB-PGBD3P0DP91 1061 aa18.04■□□□□ 0.48
SMPD4-219ENST00000491128 USP54Q70EL1 1684 aa18.04■□□□□ 0.48
SMPD4-219ENST00000491128 PPP4R2Q9NY27 417 aa18.04■□□□□ 0.48
SMPD4-219ENST00000491128 NCBP3Q53F19 620 aaKnown RBP18.03■□□□□ 0.48
SMPD4-219ENST00000491128 ERBB3P21860 1342 aa18.02■□□□□ 0.48
SMPD4-219ENST00000491128 CANXP27824 592 aaKnown RBP18.02■□□□□ 0.48
SMPD4-219ENST00000491128 PRDM11Q9NQV5 511 aa18.02■□□□□ 0.48
SMPD4-219ENST00000491128 RTF1Q92541 710 aaKnown RBP18.02■□□□□ 0.47
SMPD4-219ENST00000491128 CLUAP1Q96AJ1 413 aa18.02■□□□□ 0.47
SMPD4-219ENST00000491128 AEBP2Q6ZN18 517 aaPredicted RBP18.01■□□□□ 0.47
SMPD4-219ENST00000491128 LMOD3Q0VAK6 560 aa18.01■□□□□ 0.47
SMPD4-219ENST00000491128 IL16Q14005 1332 aa18.01■□□□□ 0.47
SMPD4-219ENST00000491128 C8orf58Q8NAV2 365 aa18■□□□□ 0.47
SMPD4-219ENST00000491128 PANK1Q8TE04 598 aa18■□□□□ 0.47
SMPD4-219ENST00000491128 LTBP4Q8N2S1 1624 aa18■□□□□ 0.47
SMPD4-219ENST00000491128 SSH1Q8WYL5 1049 aa18■□□□□ 0.47
SMPD4-219ENST00000491128 CFAP44Q96MT7 982 aa18■□□□□ 0.47
SMPD4-219ENST00000491128 GNAI1P63096 354 aa17.99■□□□□ 0.47
SMPD4-219ENST00000491128 ZNF853P0CG23 659 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms