RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 E9PSI1 815 aa13.15□□□□□ -0.3
HDAC9-225ENST00000490851 RSPH6AQ9H0K4 717 aa13.15□□□□□ -0.3
HDAC9-225ENST00000490851 LRRC7Q96NW7 1537 aa13.15□□□□□ -0.3
HDAC9-225ENST00000490851 FOXO3O43524 673 aa13.14□□□□□ -0.31
HDAC9-225ENST00000490851 HSP90AB2PQ58FF8 381 aa13.14□□□□□ -0.31
HDAC9-225ENST00000490851 SAMD1Q6SPF0 538 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-225ENST00000490851 TMEM94Q12767 1356 aa13.14□□□□□ -0.31
HDAC9-225ENST00000490851 LMTK3Q96Q04 1460 aa13.14□□□□□ -0.31
HDAC9-225ENST00000490851 TMPOP42166 694 aaKnown RBP13.14□□□□□ -0.31
HDAC9-225ENST00000490851 NGEFQ8N5V2 710 aa13.14□□□□□ -0.31
HDAC9-225ENST00000490851 MAP3K19Q56UN5 1328 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 GLIPR1L2Q4G1C9 344 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 B4GALNT3Q6L9W6 998 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 STRCP1A6NGW2 1772 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 FCHSD2O94868 740 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 NEFMP07197 916 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 RIPK4P57078 832 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 EIF4A2Q14240 407 aaKnown RBP13.13□□□□□ -0.31
HDAC9-225ENST00000490851 TPRNQ4KMQ1 711 aa13.13□□□□□ -0.31
HDAC9-225ENST00000490851 USP31Q70CQ4 1352 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 ZBTB7CA1YPR0 619 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 PHACTR3Q96KR7 559 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 C19orf44Q9H6X5 657 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 PPP4R2Q9NY27 417 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 PEAK1Q9H792 1746 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 ATF3P18847 181 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 AMPHP49418 695 aa13.12□□□□□ -0.31
HDAC9-225ENST00000490851 TRMT2AQ8IZ69 625 aaKnown RBP13.12□□□□□ -0.31
HDAC9-225ENST00000490851 PNNQ9H307 717 aaKnown RBP13.12□□□□□ -0.31
HDAC9-225ENST00000490851 AEBP1Q8IUX7 1158 aa13.11□□□□□ -0.31
HDAC9-225ENST00000490851 PHF23Q9BUL5 403 aaPredicted RBP13.11□□□□□ -0.31
HDAC9-225ENST00000490851 TRIM35Q9UPQ4 493 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 CCDC27Q2M243 656 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 SULT6B1Q6IMI4 303 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 EXOC6Q8TAG9 804 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 CNKSR2Q8WXI2 1034 aa13.1□□□□□ -0.31
HDAC9-225ENST00000490851 TSR2Q969E8 191 aaKnown RBP13.1□□□□□ -0.31
HDAC9-225ENST00000490851 DHX37Q8IY37 1157 aaKnown RBP13.09□□□□□ -0.31
HDAC9-225ENST00000490851 DDX17Q92841 729 aaKnown RBP13.09□□□□□ -0.31
HDAC9-225ENST00000490851 C1orf167Q5SNV9 1468 aa13.09□□□□□ -0.31
HDAC9-225ENST00000490851 LTV1Q96GA3 475 aaPredicted RBP13.09□□□□□ -0.31
HDAC9-225ENST00000490851 STRCQ7RTU9 1775 aa13.08□□□□□ -0.32
HDAC9-225ENST00000490851 BCAR3O75815 825 aa13.08□□□□□ -0.32
HDAC9-225ENST00000490851 ZNF335Q9H4Z2 1342 aaPredicted RBP13.08□□□□□ -0.32
HDAC9-225ENST00000490851 C20orf194Q5TEA3 1177 aa13.08□□□□□ -0.32
HDAC9-225ENST00000490851 THUMPD2Q9BTF0 503 aaKnown RBP13.08□□□□□ -0.32
HDAC9-225ENST00000490851 LAS1LQ9Y4W2 734 aaKnown RBP13.08□□□□□ -0.32
HDAC9-225ENST00000490851 SBNO1A3KN83 1393 aa13.08□□□□□ -0.32
HDAC9-225ENST00000490851 FLT4P35916 1363 aa13.08□□□□□ -0.32
HDAC9-225ENST00000490851 MARF1Q9Y4F3 1742 aaKnown RBP13.07□□□□□ -0.32
HDAC9-225ENST00000490851 TSHZ2Q9NRE2 1034 aa13.07□□□□□ -0.32
HDAC9-225ENST00000490851 NFE2L2Q16236 605 aa13.07□□□□□ -0.32
HDAC9-225ENST00000490851 KRT28Q7Z3Y7 464 aa13.07□□□□□ -0.32
HDAC9-225ENST00000490851 MYH16Q9H6N6 1097 aa13.07□□□□□ -0.32
HDAC9-225ENST00000490851 HOXC9P31274 260 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 CRBNQ96SW2 442 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 BCL2L13Q9BXK5 485 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 HAP1P54257 671 aaPredicted RBP13.05□□□□□ -0.32
HDAC9-225ENST00000490851 RBM10P98175 930 aaKnown RBP13.05□□□□□ -0.32
HDAC9-225ENST00000490851 MST1RQ04912 1400 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 FANCIQ9NVI1 1328 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 MSH6P52701 1360 aa13.05□□□□□ -0.32
HDAC9-225ENST00000490851 FAM83GA6ND36 823 aa13.04□□□□□ -0.32
HDAC9-225ENST00000490851 A0A0U1RQG5 324 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-225ENST00000490851 CANXP27824 592 aaKnown RBP13.03□□□□□ -0.32
HDAC9-225ENST00000490851 DCTN1Q14203 1278 aa13.03□□□□□ -0.32
HDAC9-225ENST00000490851 CADPS2Q86UW7 1296 aa13.03□□□□□ -0.32
HDAC9-225ENST00000490851 EXOSC9Q06265 439 aaKnown RBP13.03□□□□□ -0.32
HDAC9-225ENST00000490851 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-225ENST00000490851 FRAT1Q92837 279 aaPredicted RBP13.03□□□□□ -0.32
HDAC9-225ENST00000490851 EYA1Q99502 592 aa13.03□□□□□ -0.32
HDAC9-225ENST00000490851 ZMYND15Q9H091 742 aa13.03□□□□□ -0.32
HDAC9-225ENST00000490851 USHBP1Q8N6Y0 703 aa13.02□□□□□ -0.32
HDAC9-225ENST00000490851 LTN1O94822 1766 aa13.01□□□□□ -0.33
HDAC9-225ENST00000490851 KIF1AQ12756 1690 aa13.01□□□□□ -0.33
HDAC9-225ENST00000490851 ARHGEF10O15013 1369 aa13.01□□□□□ -0.33
HDAC9-225ENST00000490851 USP54Q70EL1 1684 aa13.01□□□□□ -0.33
HDAC9-225ENST00000490851 DLG5Q8TDM6 1919 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 XIRP1Q702N8 1843 aaKnown RBP13□□□□□ -0.33
HDAC9-225ENST00000490851 RGPD1P0DJD0 1748 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 DCCP43146 1447 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 GCP02774 474 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 RARSP54136 660 aaKnown RBP13□□□□□ -0.33
HDAC9-225ENST00000490851 KCNH5Q8NCM2 988 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 NFAT5O94916 1531 aa13□□□□□ -0.33
HDAC9-225ENST00000490851 IL16Q14005 1332 aa12.99□□□□□ -0.33
HDAC9-225ENST00000490851 MCM10Q7L590 875 aa12.99□□□□□ -0.33
HDAC9-225ENST00000490851 TRPM3Q9HCF6 1732 aaPredicted RBP12.99□□□□□ -0.33
HDAC9-225ENST00000490851 NCOA3Q9Y6Q9 1424 aa12.99□□□□□ -0.33
HDAC9-225ENST00000490851 IGSF1Q8N6C5 1336 aa12.99□□□□□ -0.33
HDAC9-225ENST00000490851 ZC3H6P61129 1189 aaKnown RBP12.99□□□□□ -0.33
HDAC9-225ENST00000490851 LMOD3Q0VAK6 560 aa12.98□□□□□ -0.33
HDAC9-225ENST00000490851 CABLES1Q8TDN4 633 aa12.98□□□□□ -0.33
HDAC9-225ENST00000490851 IP6K1Q92551 441 aa12.98□□□□□ -0.33
HDAC9-225ENST00000490851 DEKP35659 375 aaKnown RBP12.98□□□□□ -0.33
HDAC9-225ENST00000490851 NPHP3Q7Z494 1330 aa12.97□□□□□ -0.33
HDAC9-225ENST00000490851 MTHFSDQ2M296 383 aaKnown RBP12.97□□□□□ -0.33
HDAC9-225ENST00000490851 PANK1Q8TE04 598 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms