RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C1orf115Q9H7X2 142 aa22.64■■□□□ 1.21
VIM-206ENST00000487938 MBIPQ9NS73 344 aa22.64■■□□□ 1.21
VIM-206ENST00000487938 CPSF1Q10570 1443 aaKnown RBP22.64■■□□□ 1.21
VIM-206ENST00000487938 ZBTB7BO15156 539 aaPredicted RBP22.62■■□□□ 1.21
VIM-206ENST00000487938 GNAI1P63096 354 aa22.62■■□□□ 1.21
VIM-206ENST00000487938 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.62■■□□□ 1.21
VIM-206ENST00000487938 COG3Q96JB2 828 aa22.62■■□□□ 1.21
VIM-206ENST00000487938 EDC4Q6P2E9 1401 aaKnown RBP22.62■■□□□ 1.21
VIM-206ENST00000487938 SETD1AO15047 1707 aaKnown RBP22.62■■□□□ 1.21
VIM-206ENST00000487938 FAM83GA6ND36 823 aa22.61■■□□□ 1.21
VIM-206ENST00000487938 BRPF1P55201 1214 aaPredicted RBP22.61■■□□□ 1.21
VIM-206ENST00000487938 ZNF428Q96B54 188 aa22.61■■□□□ 1.21
VIM-206ENST00000487938 CALD1Q05682 793 aaKnown RBP22.61■■□□□ 1.21
VIM-206ENST00000487938 CHD1LQ86WJ1 897 aa22.61■■□□□ 1.21
VIM-206ENST00000487938 IFT57Q9NWB7 429 aa22.61■■□□□ 1.21
VIM-206ENST00000487938 DCTN1Q14203 1278 aa22.6■■□□□ 1.21
VIM-206ENST00000487938 CCDC61Q9Y6R9 512 aa22.6■■□□□ 1.21
VIM-206ENST00000487938 ZNF853P0CG23 659 aa22.59■■□□□ 1.21
VIM-206ENST00000487938 C8orf58Q8NAV2 365 aa22.59■■□□□ 1.21
VIM-206ENST00000487938 ANKRD45Q5TZF3 282 aa22.59■■□□□ 1.21
VIM-206ENST00000487938 TWISTNBQ3B726 338 aaPredicted RBP22.58■■□□□ 1.21
VIM-206ENST00000487938 CPS1P31327 1500 aa22.58■■□□□ 1.2
VIM-206ENST00000487938 ARHGAP45Q92619 1136 aa22.56■■□□□ 1.2
VIM-206ENST00000487938 NRXN3Q9Y4C0 1643 aa22.56■■□□□ 1.2
VIM-206ENST00000487938 HDGFP51858 240 aaKnown RBP22.56■■□□□ 1.2
VIM-206ENST00000487938 CFAP44Q96MT7 982 aa22.56■■□□□ 1.2
VIM-206ENST00000487938 AATKQ6ZMQ8 1374 aa22.55■■□□□ 1.2
VIM-206ENST00000487938 TNRQ92752 1358 aa22.55■■□□□ 1.2
VIM-206ENST00000487938 CDK12Q9NYV4 1490 aaPredicted RBP22.55■■□□□ 1.2
VIM-206ENST00000487938 SIRT2Q8IXJ6 389 aa22.54■■□□□ 1.2
VIM-206ENST00000487938 PRR36Q9H6K5 1346 aa22.53■■□□□ 1.2
VIM-206ENST00000487938 NUTM2FA1L443 756 aa22.53■■□□□ 1.2
VIM-206ENST00000487938 LMOD3Q0VAK6 560 aa22.52■■□□□ 1.2
VIM-206ENST00000487938 AEBP1Q8IUX7 1158 aa22.52■■□□□ 1.2
VIM-206ENST00000487938 GCC1Q96CN9 775 aa22.52■■□□□ 1.2
VIM-206ENST00000487938 PTCH1Q13635 1447 aa22.51■■□□□ 1.19
VIM-206ENST00000487938 CHMP4BQ9H444 224 aaKnown RBP22.51■■□□□ 1.19
VIM-206ENST00000487938 PIK3R4Q99570 1358 aa22.51■■□□□ 1.19
VIM-206ENST00000487938 DLG5Q8TDM6 1919 aa22.51■■□□□ 1.19
VIM-206ENST00000487938 ABCC4O15439 1325 aa22.5■■□□□ 1.19
VIM-206ENST00000487938 ZNF692Q9BU19 519 aaPredicted RBP22.5■■□□□ 1.19
VIM-206ENST00000487938 SULT6B1Q6IMI4 303 aa22.49■■□□□ 1.19
VIM-206ENST00000487938 HSCBQ8IWL3 235 aa22.49■■□□□ 1.19
VIM-206ENST00000487938 BMP2KLQ5H9B9 411 aa22.48■■□□□ 1.19
VIM-206ENST00000487938 EIF4A2Q14240 407 aaKnown RBP22.48■■□□□ 1.19
VIM-206ENST00000487938 SIRT1Q96EB6 747 aa22.48■■□□□ 1.19
VIM-206ENST00000487938 CHMP5Q9NZZ3 219 aa22.48■■□□□ 1.19
VIM-206ENST00000487938 RBM25P49756 843 aaKnown RBP22.47■■□□□ 1.19
VIM-206ENST00000487938 KRT24Q2M2I5 525 aa22.47■■□□□ 1.19
VIM-206ENST00000487938 TMEM2Q9UHN6 1383 aa22.47■■□□□ 1.19
VIM-206ENST00000487938 API5Q9BZZ5 524 aaKnown RBP22.47■■□□□ 1.19
VIM-206ENST00000487938 MCM4P33991 863 aa22.46■■□□□ 1.19
VIM-206ENST00000487938 ROBO2Q9HCK4 1378 aa22.46■■□□□ 1.19
VIM-206ENST00000487938 MON2Q7Z3U7 1717 aa22.45■■□□□ 1.18
VIM-206ENST00000487938 SOX12O15370 315 aa22.45■■□□□ 1.18
VIM-206ENST00000487938 TECPR2O15040 1411 aa22.45■■□□□ 1.18
VIM-206ENST00000487938 MCM10Q7L590 875 aa22.45■■□□□ 1.18
VIM-206ENST00000487938 ACEP12821 1306 aa22.44■■□□□ 1.18
VIM-206ENST00000487938 TTC21BQ7Z4L5 1316 aa22.44■■□□□ 1.18
VIM-206ENST00000487938 C3P01024 1663 aa22.43■■□□□ 1.18
VIM-206ENST00000487938 HSP90AB2PQ58FF8 381 aa22.42■■□□□ 1.18
VIM-206ENST00000487938 TBC1D9Q6ZT07 1266 aa22.42■■□□□ 1.18
VIM-206ENST00000487938 UBR1Q8IWV7 1749 aa22.42■■□□□ 1.18
VIM-206ENST00000487938 KNDC1Q76NI1 1749 aa22.42■■□□□ 1.18
VIM-206ENST00000487938 AKAP12Q02952 1782 aa22.42■■□□□ 1.18
VIM-206ENST00000487938 ARXQ96QS3 562 aa22.41■■□□□ 1.18
VIM-206ENST00000487938 GZF1Q9H116 711 aaPredicted RBP22.41■■□□□ 1.18
VIM-206ENST00000487938 ITSN1Q15811 1721 aa22.41■■□□□ 1.18
VIM-206ENST00000487938 KIF2CQ99661 725 aa22.4■■□□□ 1.18
VIM-206ENST00000487938 SNX21Q969T3 373 aa22.4■■□□□ 1.18
VIM-206ENST00000487938 CHL1O00533 1208 aa22.38■■□□□ 1.17
VIM-206ENST00000487938 LTKP29376 864 aa22.38■■□□□ 1.17
VIM-206ENST00000487938 C16orf71Q8IYS4 520 aaPredicted RBP22.38■■□□□ 1.17
VIM-206ENST00000487938 HSP90AB1P08238 724 aaKnown RBP22.37■■□□□ 1.17
VIM-206ENST00000487938 MIS18AQ9NYP9 233 aa22.37■■□□□ 1.17
VIM-206ENST00000487938 ADAMTS13Q76LX8 1427 aa22.37■■□□□ 1.17
VIM-206ENST00000487938 INTS3Q68E01 1043 aaKnown RBP22.37■■□□□ 1.17
VIM-206ENST00000487938 SLC26A8Q96RN1 970 aa22.37■■□□□ 1.17
VIM-206ENST00000487938 RBM42Q9BTD8 480 aaKnown RBP22.37■■□□□ 1.17
VIM-206ENST00000487938 CD2BP2O95400 341 aaKnown RBP22.36■■□□□ 1.17
VIM-206ENST00000487938 GSPT1P15170 499 aaKnown RBP22.36■■□□□ 1.17
VIM-206ENST00000487938 PLEKHM2Q8IWE5 1019 aa22.36■■□□□ 1.17
VIM-206ENST00000487938 DCTPP1Q9H773 170 aa22.36■■□□□ 1.17
VIM-206ENST00000487938 CEBPAP49715 358 aaPredicted RBP22.36■■□□□ 1.17
VIM-206ENST00000487938 FOXD4L1Q9NU39 408 aa22.36■■□□□ 1.17
VIM-206ENST00000487938 PLEKHG1Q9ULL1 1385 aa22.35■■□□□ 1.17
VIM-206ENST00000487938 PLEKHG3A1L390 1219 aa22.35■■□□□ 1.17
VIM-206ENST00000487938 TRAK2O60296 914 aa22.35■■□□□ 1.17
VIM-206ENST00000487938 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.35■■□□□ 1.17
VIM-206ENST00000487938 DDIT3P35638 169 aa22.34■■□□□ 1.17
VIM-206ENST00000487938 FOXO3O43524 673 aa22.34■■□□□ 1.17
VIM-206ENST00000487938 CDC45O75419 566 aa22.33■■□□□ 1.17
VIM-206ENST00000487938 KIF24Q5T7B8 1368 aa22.33■■□□□ 1.17
VIM-206ENST00000487938 NCOA3Q9Y6Q9 1424 aa22.33■■□□□ 1.17
VIM-206ENST00000487938 APBB1O00213 710 aa22.33■■□□□ 1.16
VIM-206ENST00000487938 L1TD1Q5T7N2 865 aaKnown RBP22.33■■□□□ 1.16
VIM-206ENST00000487938 OVOS2A0A0J9YW53 1432 aa22.32■■□□□ 1.16
VIM-206ENST00000487938 OVOS2Q6IE36 1432 aa22.32■■□□□ 1.16
VIM-206ENST00000487938 PLPPR3Q6T4P5 718 aa22.32■■□□□ 1.16
VIM-206ENST00000487938 ANKRD44Q8N8A2 993 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms