RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 RPGRIP1LQ68CZ1 1315 aa15.13■□□□□ 0.01
SHROOM3-208ENST00000486758 CHMP4BQ9H444 224 aaKnown RBP15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 FSD2A1L4K1 749 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 PTMSP20962 102 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 NUDT16Q96DE0 195 aaKnown RBP15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 RTEL1-TNFRSF6BF6WH68 1400 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 PTPRTO14522 1441 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 SYCE3A1L190 88 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 AEBP1Q8IUX7 1158 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 STK31Q9BXU1 1019 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 NLRP1Q9C000 1473 aa15.12■□□□□ 0.01
SHROOM3-208ENST00000486758 HDGFP51858 240 aaKnown RBP15.11■□□□□ 0.01
SHROOM3-208ENST00000486758 GAS2L2Q8NHY3 880 aa15.11■□□□□ 0.01
SHROOM3-208ENST00000486758 PDCL3Q9H2J4 239 aa15.11■□□□□ 0.01
SHROOM3-208ENST00000486758 KIAA2012Q0VF49 1180 aa15.11■□□□□ 0.01
SHROOM3-208ENST00000486758 TSPYL4Q9UJ04 414 aa15.11■□□□□ 0.01
SHROOM3-208ENST00000486758 INSRP06213 1382 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 ST18O60284 1047 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 GLI2P10070 1586 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 LMOD3Q0VAK6 560 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 FKBP5Q13451 457 aaPredicted RBP15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 ATAD2Q6PL18 1390 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 F6X3S4 739 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 CERKQ8TCT0 537 aa15.1■□□□□ 0.01
SHROOM3-208ENST00000486758 NPATQ14207 1427 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 FCHSD2O94868 740 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 SLC4A2P04920 1241 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 NFE2L2Q16236 605 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 TRIM35Q9UPQ4 493 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 POLKQ9UBT6 870 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 BAG4O95429 457 aaKnown RBP15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 TSHZ3Q63HK5 1081 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 ANKRD36BQ8N2N9 1353 aa15.09■□□□□ 0.01
SHROOM3-208ENST00000486758 A0A0G2JS52 829 aa15.08■□□□□ 0.01
SHROOM3-208ENST00000486758 TBC1D9Q6ZT07 1266 aa15.08■□□□□ 0.01
SHROOM3-208ENST00000486758 CHMP3Q9Y3E7 222 aa15.08■□□□□ 0.01
SHROOM3-208ENST00000486758 MBIPQ9NS73 344 aa15.08■□□□□ 0
SHROOM3-208ENST00000486758 FAM177BA6PVY3 158 aa15.08■□□□□ 0
SHROOM3-208ENST00000486758 NLRP6P59044 892 aa15.08■□□□□ 0
SHROOM3-208ENST00000486758 C8orf58Q8NAV2 365 aa15.08■□□□□ 0
SHROOM3-208ENST00000486758 API5Q9BZZ5 524 aaKnown RBP15.07■□□□□ 0
SHROOM3-208ENST00000486758 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.07■□□□□ 0
SHROOM3-208ENST00000486758 ABCC1P33527 1531 aa15.07■□□□□ 0
SHROOM3-208ENST00000486758 NINLQ9Y2I6 1382 aa15.07■□□□□ 0
SHROOM3-208ENST00000486758 CDC45O75419 566 aa15.07■□□□□ 0
SHROOM3-208ENST00000486758 CCDC9Q9Y3X0 531 aaKnown RBP15.07■□□□□ 0
SHROOM3-208ENST00000486758 C16orf71Q8IYS4 520 aaPredicted RBP15.06■□□□□ 0
SHROOM3-208ENST00000486758 GDPD2Q9HCC8 539 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 ZNF518AQ6AHZ1 1483 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 CCDC61Q9Y6R9 512 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 NUCB2P80303 420 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 AAMPQ13685 434 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 EID1Q9Y6B2 187 aa15.06■□□□□ 0
SHROOM3-208ENST00000486758 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.05■□□□□ 0
SHROOM3-208ENST00000486758 DTNBO60941 627 aa15.05■□□□□ 0
SHROOM3-208ENST00000486758 HSP90AB2PQ58FF8 381 aa15.05■□□□□ 0
SHROOM3-208ENST00000486758 ZNF830Q96NB3 372 aaPredicted RBP15.05■□□□□ 0
SHROOM3-208ENST00000486758 ISY1Q9ULR0 285 aaKnown RBP15.05■□□□□ 0
SHROOM3-208ENST00000486758 PRIM1P49642 420 aaKnown RBP15.05■□□□□ -0
SHROOM3-208ENST00000486758 CLTCL1P53675 1640 aa15.05■□□□□ -0
SHROOM3-208ENST00000486758 NEK4P51957 841 aa15.05■□□□□ -0
SHROOM3-208ENST00000486758 EXOC6BQ9Y2D4 811 aa15.05■□□□□ -0
SHROOM3-208ENST00000486758 MAP3K4Q9Y6R4 1608 aa15.04■□□□□ -0
SHROOM3-208ENST00000486758 USHBP1Q8N6Y0 703 aa15.04■□□□□ -0
SHROOM3-208ENST00000486758 CIZ1Q9ULV3 898 aaPredicted RBP15.04■□□□□ -0
SHROOM3-208ENST00000486758 ABCA9Q8IUA7 1624 aa15.04■□□□□ -0
SHROOM3-208ENST00000486758 RAB3GAP1Q15042 981 aa15.04■□□□□ -0
SHROOM3-208ENST00000486758 TSC1Q92574 1164 aa15.04■□□□□ -0
SHROOM3-208ENST00000486758 MAP4K4O95819 1239 aaPredicted RBP15.04■□□□□ -0
SHROOM3-208ENST00000486758 PDIA4P13667 645 aaKnown RBP15.03■□□□□ -0
SHROOM3-208ENST00000486758 KCNJ4P48050 445 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 ZSCAN23Q3MJ62 389 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 DRC7Q8IY82 874 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 ANO2Q9NQ90 1003 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 WASLO00401 505 aaPredicted RBP15.03■□□□□ -0
SHROOM3-208ENST00000486758 FOXO3O43524 673 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 PKP1Q13835 747 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 CBX1P83916 185 aa15.03■□□□□ -0
SHROOM3-208ENST00000486758 ZGPATQ8N5A5 531 aaKnown RBP15.03■□□□□ -0
SHROOM3-208ENST00000486758 IQGAP3Q86VI3 1631 aa15.02■□□□□ -0
SHROOM3-208ENST00000486758 CHAF1AQ13111 956 aaPredicted RBP15.02□□□□□ -0.01
SHROOM3-208ENST00000486758 HMMRO75330 724 aa15.01□□□□□ -0.01
SHROOM3-208ENST00000486758 RBSNQ9H1K0 784 aa15.01□□□□□ -0.01
SHROOM3-208ENST00000486758 NPC1L1Q9UHC9 1359 aa15.01□□□□□ -0.01
SHROOM3-208ENST00000486758 TRPM2O94759 1503 aa15.01□□□□□ -0.01
SHROOM3-208ENST00000486758 KLHL40Q2TBA0 621 aa15.01□□□□□ -0.01
SHROOM3-208ENST00000486758 IGSF3O75054 1194 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 IL1RAPL2Q9NP60 686 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 CCDC27Q2M243 656 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 AK9Q5TCS8 1911 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 KDM5AP29375 1690 aaKnown RBP15□□□□□ -0.01
SHROOM3-208ENST00000486758 ZFYVE16Q7Z3T8 1539 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 HAP1P54257 671 aaPredicted RBP15□□□□□ -0.01
SHROOM3-208ENST00000486758 SMC5Q8IY18 1101 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 ZBTB40Q9NUA8 1239 aa15□□□□□ -0.01
SHROOM3-208ENST00000486758 NUCB1Q02818 461 aa14.99□□□□□ -0.01
SHROOM3-208ENST00000486758 INTS3Q68E01 1043 aaKnown RBP14.99□□□□□ -0.01
SHROOM3-208ENST00000486758 ABTB2Q8N961 1025 aa14.99□□□□□ -0.01
SHROOM3-208ENST00000486758 YEATS2Q9ULM3 1422 aa14.99□□□□□ -0.01
SHROOM3-208ENST00000486758 VAMP4O75379 141 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms