RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 NOL8Q76FK4 1167 aaKnown RBP23.01■■□□□ 1.27
CCDC88B-207ENST00000479965 USP26Q9BXU7 913 aa23.01■■□□□ 1.27
CCDC88B-207ENST00000479965 ZDHHC9Q9Y397 364 aa23.01■■□□□ 1.27
CCDC88B-207ENST00000479965 CWC22Q9HCG8 908 aaKnown RBP23■■□□□ 1.27
CCDC88B-207ENST00000479965 ATAD2Q6PL18 1390 aa23■■□□□ 1.27
CCDC88B-207ENST00000479965 PLEKHM2Q8IWE5 1019 aa23■■□□□ 1.27
CCDC88B-207ENST00000479965 NCBP3Q53F19 620 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 ABCA6Q8N139 1617 aa22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 TSPYL6Q8N831 410 aa22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 CFAP74Q9C0B2 1584 aa22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 SBNO2Q9Y2G9 1366 aa22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 CBX1P83916 185 aa22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 CHMP4BQ9H444 224 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-207ENST00000479965 CCDC94Q9BW85 323 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-207ENST00000479965 IL16Q14005 1332 aa22.98■■□□□ 1.27
CCDC88B-207ENST00000479965 INTS3Q68E01 1043 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-207ENST00000479965 OTUD7AQ8TE49 926 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-207ENST00000479965 SHROOM2Q13796 1616 aa22.98■■□□□ 1.27
CCDC88B-207ENST00000479965 DIAPH1O60610 1272 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-207ENST00000479965 SRPK2P78362 688 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-207ENST00000479965 EVC2Q86UK5 1308 aa22.96■■□□□ 1.27
CCDC88B-207ENST00000479965 TTC22Q5TAA0 569 aa22.95■■□□□ 1.27
CCDC88B-207ENST00000479965 C17orf53Q8N3J3 647 aaPredicted RBP22.95■■□□□ 1.27
CCDC88B-207ENST00000479965 MAP3K4Q9Y6R4 1608 aa22.95■■□□□ 1.26
CCDC88B-207ENST00000479965 CASC1Q6TDU7 716 aa22.95■■□□□ 1.26
CCDC88B-207ENST00000479965 TSPY26PQ9H489 355 aa22.95■■□□□ 1.26
CCDC88B-207ENST00000479965 MRPL50Q8N5N7 158 aaKnown RBP22.94■■□□□ 1.26
CCDC88B-207ENST00000479965 GDPD2Q9HCC8 539 aa22.94■■□□□ 1.26
CCDC88B-207ENST00000479965 SMARCA5O60264 1052 aaPredicted RBP22.94■■□□□ 1.26
CCDC88B-207ENST00000479965 PLCB2Q00722 1185 aa22.94■■□□□ 1.26
CCDC88B-207ENST00000479965 PRKAR2BP31323 418 aa22.93■■□□□ 1.26
CCDC88B-207ENST00000479965 VAMP4O75379 141 aa22.93■■□□□ 1.26
CCDC88B-207ENST00000479965 ADGRL1O94910 1474 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 MBD3O95983 291 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 HMOX1P09601 288 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 SDSP20132 328 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 NEK4P51957 841 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 FBLN1P23142 703 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 MYRIPQ8NFW9 859 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 STK26Q9P289 416 aa22.92■■□□□ 1.26
CCDC88B-207ENST00000479965 ANKRD36BQ8N2N9 1353 aa22.91■■□□□ 1.26
CCDC88B-207ENST00000479965 TTC12Q9H892 705 aaPredicted RBP22.91■■□□□ 1.26
CCDC88B-207ENST00000479965 PLCH2O75038 1416 aa22.91■■□□□ 1.26
CCDC88B-207ENST00000479965 ADGRB2O60241 1585 aa22.91■■□□□ 1.26
CCDC88B-207ENST00000479965 USP25Q9UHP3 1055 aa22.9■■□□□ 1.26
CCDC88B-207ENST00000479965 C14orf93Q9H972 538 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-207ENST00000479965 MYOM2P54296 1465 aa22.9■■□□□ 1.26
CCDC88B-207ENST00000479965 DMTNQ08495 405 aa22.89■■□□□ 1.26
CCDC88B-207ENST00000479965 KIAA1210Q9ULL0 1709 aa22.89■■□□□ 1.26
CCDC88B-207ENST00000479965 ZSCAN20P17040 1043 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-207ENST00000479965 PPP4R3BQ5MIZ7 849 aa22.88■■□□□ 1.25
CCDC88B-207ENST00000479965 CFAP44Q96MT7 982 aa22.88■■□□□ 1.25
CCDC88B-207ENST00000479965 NOLC1Q14978 699 aaKnown RBP eCLIP22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 NSD2O96028 1365 aa22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 SPDYE4A6NLX3 237 aa22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 REC8O95072 547 aa22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 TMX3Q96JJ7 454 aa22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 ARHGAP31Q2M1Z3 1444 aa22.87■■□□□ 1.25
CCDC88B-207ENST00000479965 TWISTNBQ3B726 338 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-207ENST00000479965 ZNF710Q8N1W2 664 aa22.86■■□□□ 1.25
CCDC88B-207ENST00000479965 SYAP1Q96A49 352 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-207ENST00000479965 FYB1O15117 783 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 PHACTR3Q96KR7 559 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 DCTPP1Q9H773 170 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 ARHGAP45Q92619 1136 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 A0A1W2PP64 1363 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 MED14O60244 1454 aa22.85■■□□□ 1.25
CCDC88B-207ENST00000479965 GADD45BO75293 160 aaPredicted RBP22.84■■□□□ 1.25
CCDC88B-207ENST00000479965 ZNF428Q96B54 188 aa22.84■■□□□ 1.25
CCDC88B-207ENST00000479965 KIF3AQ9Y496 699 aa22.84■■□□□ 1.25
CCDC88B-207ENST00000479965 IGSF3O75054 1194 aa22.83■■□□□ 1.25
CCDC88B-207ENST00000479965 HMGN5P82970 282 aaKnown RBP22.83■■□□□ 1.25
CCDC88B-207ENST00000479965 MBIPQ9NS73 344 aa22.83■■□□□ 1.25
CCDC88B-207ENST00000479965 ABCC4O15439 1325 aa22.83■■□□□ 1.24
CCDC88B-207ENST00000479965 ERC2O15083 957 aa22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 ATP2B3Q16720 1220 aa22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 C8orf58Q8NAV2 365 aa22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 PIBF1Q8WXW3 757 aa22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 PRIMPOLQ96LW4 560 aa22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 API5Q9BZZ5 524 aaKnown RBP22.82■■□□□ 1.24
CCDC88B-207ENST00000479965 FCHSD2O94868 740 aa22.81■■□□□ 1.24
CCDC88B-207ENST00000479965 ADCY5O95622 1261 aa22.81■■□□□ 1.24
CCDC88B-207ENST00000479965 UTP14CQ5TAP6 766 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-207ENST00000479965 BRPF1P55201 1214 aaPredicted RBP22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 GNAI1P63096 354 aa22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 TSHZ3Q63HK5 1081 aa22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 TET3O43151 1660 aa22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 ABCC1P33527 1531 aa22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 PHF14O94880 888 aa22.8■■□□□ 1.24
CCDC88B-207ENST00000479965 BRD1O95696 1058 aa22.79■■□□□ 1.24
CCDC88B-207ENST00000479965 MINK1Q8N4C8 1332 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-207ENST00000479965 QRICH2Q9H0J4 1663 aa22.79■■□□□ 1.24
CCDC88B-207ENST00000479965 HCLS1P14317 486 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-207ENST00000479965 GGT6Q6P531 493 aa22.78■■□□□ 1.24
CCDC88B-207ENST00000479965 BCL2L12Q9HB09 334 aa22.78■■□□□ 1.24
CCDC88B-207ENST00000479965 NFE2L2Q16236 605 aa22.77■■□□□ 1.24
CCDC88B-207ENST00000479965 USP48Q86UV5 1035 aa22.77■■□□□ 1.24
CCDC88B-207ENST00000479965 TERF2IPQ9NYB0 399 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms