RNA–Protein interactions for RNA: ENST00000475255.5

SEMA4D-217, Transcript of semaphorin 4D, humanhuman

TSL 1 (best)

Gene SEMA4D, Length 3,053 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-217ENST00000475255 PRPF40AO75400 957 aaKnown RBP16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 ZRANB1Q9UGI0 708 aa16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 EMILIN1Q9Y6C2 1016 aa16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 VGFO15240 615 aaPredicted RBP16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 FOXD4L6Q3SYB3 417 aaPredicted RBP16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 FOXD4L3Q6VB84 417 aaPredicted RBP16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 PLEKHM2Q8IWE5 1019 aa16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 RBSNQ9H1K0 784 aa16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 TERF2IPQ9NYB0 399 aa16.97■□□□□ 0.31
SEMA4D-217ENST00000475255 NSD2O96028 1365 aa16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 CCDC173Q0VFZ6 552 aa16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 IDI1Q13907 227 aa16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 ZC3H13Q5T200 1668 aaKnown RBP16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 COL3A1P02461 1466 aaPredicted RBP16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 XPCQ01831 940 aaPredicted RBP16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 MPNDQ8N594 471 aa16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 R3HCC1Q9Y3T6 440 aaKnown RBP16.96■□□□□ 0.31
SEMA4D-217ENST00000475255 MSNP26038 577 aaKnown RBP16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 CALD1Q05682 793 aaKnown RBP16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 KLHL40Q2TBA0 621 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 TWISTNBQ3B726 338 aaPredicted RBP16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 NOL8Q76FK4 1167 aaKnown RBP16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 ZSCAN30Q86W11 494 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 SETBP1Q9Y6X0 1596 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 PRIM1P49642 420 aaKnown RBP16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 ZSCAN23Q3MJ62 389 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 GLI2P10070 1586 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 FAM13BQ9NYF5 915 aa16.95■□□□□ 0.3
SEMA4D-217ENST00000475255 RNF214Q8ND24 703 aa16.94■□□□□ 0.3
SEMA4D-217ENST00000475255 POLKQ9UBT6 870 aa16.94■□□□□ 0.3
SEMA4D-217ENST00000475255 CDK19Q9BWU1 502 aa16.94■□□□□ 0.3
SEMA4D-217ENST00000475255 NSFL1CQ9UNZ2 370 aaKnown RBP16.94■□□□□ 0.3
SEMA4D-217ENST00000475255 FCHSD2O94868 740 aa16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 PPP1R9BQ96SB3 815 aa16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 LMBRD1Q9NUN5 540 aa16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 CFAP74Q9C0B2 1584 aa16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 RAPGEF3O95398 923 aa16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 NCBP3Q53F19 620 aaKnown RBP16.93■□□□□ 0.3
SEMA4D-217ENST00000475255 NFE2L2Q16236 605 aa16.92■□□□□ 0.3
SEMA4D-217ENST00000475255 TSHZ3Q63HK5 1081 aa16.92■□□□□ 0.3
SEMA4D-217ENST00000475255 HDGFL2Q7Z4V5 671 aaPredicted RBP16.92■□□□□ 0.3
SEMA4D-217ENST00000475255 PPLO60437 1756 aa16.91■□□□□ 0.3
SEMA4D-217ENST00000475255 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
SEMA4D-217ENST00000475255 GPT2Q8TD30 523 aa16.91■□□□□ 0.3
SEMA4D-217ENST00000475255 USP26Q9BXU7 913 aa16.91■□□□□ 0.3
SEMA4D-217ENST00000475255 CAMSAP1Q5T5Y3 1602 aa16.91■□□□□ 0.3
SEMA4D-217ENST00000475255 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 USP32Q8NFA0 1604 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 LRRC7Q96NW7 1537 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 SYCE3A1L190 88 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 SDSP20132 328 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 TTC22Q5TAA0 569 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 RABEP1Q15276 862 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 ZDHHC9Q9Y397 364 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 KIDINS220Q9ULH0 1771 aa16.9■□□□□ 0.3
SEMA4D-217ENST00000475255 NEURL4Q96JN8 1562 aa16.89■□□□□ 0.29
SEMA4D-217ENST00000475255 RPGRIP1LQ68CZ1 1315 aa16.89■□□□□ 0.29
SEMA4D-217ENST00000475255 TPM2P07951 284 aa16.89■□□□□ 0.29
SEMA4D-217ENST00000475255 ABCC4O15439 1325 aa16.89■□□□□ 0.29
SEMA4D-217ENST00000475255 NCKAP5LQ9HCH0 1330 aa16.89■□□□□ 0.29
SEMA4D-217ENST00000475255 NME9Q86XW9 330 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 MED14O60244 1454 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 ARHGEF28Q8N1W1 1705 aaKnown RBP16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 OFD1O75665 1012 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 GNAI1P63096 354 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 UHRF1BP1LA0JNW5 1464 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 TMEM63CQ9P1W3 806 aa16.88■□□□□ 0.29
SEMA4D-217ENST00000475255 PTMSP20962 102 aa16.87■□□□□ 0.29
SEMA4D-217ENST00000475255 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.87■□□□□ 0.29
SEMA4D-217ENST00000475255 CD163L1Q9NR16 1453 aa16.87■□□□□ 0.29
SEMA4D-217ENST00000475255 NUCB2P80303 420 aa16.86■□□□□ 0.29
SEMA4D-217ENST00000475255 DCTPP1Q9H773 170 aa16.86■□□□□ 0.29
SEMA4D-217ENST00000475255 ABCA9Q8IUA7 1624 aa16.86■□□□□ 0.29
SEMA4D-217ENST00000475255 ZNF445P59923 1031 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 MEIS3Q99687 375 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 PUS7Q96PZ0 661 aaKnown RBP16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 GDPD2Q9HCC8 539 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 MIS18AQ9NYP9 233 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 DTNBO60941 627 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 CYP2E1P05181 493 aaPredicted RBP16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 FBXO31Q5XUX0 539 aaPredicted RBP16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 INTS3Q68E01 1043 aaKnown RBP16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 ASXL2Q76L83 1435 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 ARHGAP45Q92619 1136 aa16.85■□□□□ 0.29
SEMA4D-217ENST00000475255 FAM135BQ49AJ0 1406 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 AEBP1Q8IUX7 1158 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 JARID2Q92833 1246 aaPredicted RBP16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 API5Q9BZZ5 524 aaKnown RBP16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 IFT57Q9NWB7 429 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 PNPLA6Q8IY17 1366 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 PTCH1Q13635 1447 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 SOX12O15370 315 aa16.84■□□□□ 0.29
SEMA4D-217ENST00000475255 SLC4A10Q6U841 1118 aa16.83■□□□□ 0.29
SEMA4D-217ENST00000475255 CLEC17AQ6ZS10 378 aa16.83■□□□□ 0.29
SEMA4D-217ENST00000475255 ARAP3Q8WWN8 1544 aa16.83■□□□□ 0.28
SEMA4D-217ENST00000475255 NEK4P51957 841 aa16.83■□□□□ 0.28
SEMA4D-217ENST00000475255 MCM10Q7L590 875 aa16.83■□□□□ 0.28
SEMA4D-217ENST00000475255 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.83■□□□□ 0.28
SEMA4D-217ENST00000475255 PDCL3Q9H2J4 239 aa16.83■□□□□ 0.28
SEMA4D-217ENST00000475255 ST18O60284 1047 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms