RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 NUDT12Q9BQG2 462 aa8.54□□□□□ -1.04
RTF1-203ENST00000473214 THOC2Q8NI27 1593 aaKnown RBP8.53□□□□□ -1.04
RTF1-203ENST00000473214 BRD1O95696 1058 aa8.53□□□□□ -1.04
RTF1-203ENST00000473214 VEGFBP49765 207 aa8.53□□□□□ -1.04
RTF1-203ENST00000473214 PCMTD1Q96MG8 357 aaPredicted RBP8.53□□□□□ -1.04
RTF1-203ENST00000473214 IGSF5Q9NSI5 407 aa8.53□□□□□ -1.04
RTF1-203ENST00000473214 H3BM21 787 aa8.52□□□□□ -1.05
RTF1-203ENST00000473214 CAPN5O15484 640 aaPredicted RBP8.52□□□□□ -1.05
RTF1-203ENST00000473214 NUTM1Q86Y26 1132 aa8.52□□□□□ -1.05
RTF1-203ENST00000473214 GOPCQ9HD26 462 aa8.52□□□□□ -1.05
RTF1-203ENST00000473214 PCDHGC3Q9UN70 934 aa8.52□□□□□ -1.05
RTF1-203ENST00000473214 ANKRD13AQ8IZ07 590 aa8.51□□□□□ -1.05
RTF1-203ENST00000473214 EHBP1Q8NDI1 1231 aa8.51□□□□□ -1.05
RTF1-203ENST00000473214 SPATA32Q96LK8 384 aa8.51□□□□□ -1.05
RTF1-203ENST00000473214 ERBB4Q15303 1308 aa8.51□□□□□ -1.05
RTF1-203ENST00000473214 FDX1P10109 184 aa8.5□□□□□ -1.05
RTF1-203ENST00000473214 NCLP19338 710 aaKnown RBP8.5□□□□□ -1.05
RTF1-203ENST00000473214 SH3BP2P78314 561 aa8.5□□□□□ -1.05
RTF1-203ENST00000473214 ZNF526Q8TF50 670 aaPredicted RBP8.5□□□□□ -1.05
RTF1-203ENST00000473214 CCNYL3P0C7X3 344 aa8.49□□□□□ -1.05
RTF1-203ENST00000473214 WASF2Q9Y6W5 498 aa8.49□□□□□ -1.05
RTF1-203ENST00000473214 MS4A1P11836 297 aa8.48□□□□□ -1.05
RTF1-203ENST00000473214 SND1Q7KZF4 910 aaKnown RBP eCLIP8.48□□□□□ -1.05
RTF1-203ENST00000473214 C6orf229H3BNL8 230 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 PTPRNQ16849 979 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 ZFP42Q96MM3 310 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 BCL11AQ9H165 835 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 EVA1BQ9NVM1 165 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 IVNS1ABPQ9Y6Y0 642 aa8.47□□□□□ -1.05
RTF1-203ENST00000473214 SPIRE2Q8WWL2 714 aa8.46□□□□□ -1.06
RTF1-203ENST00000473214 UNC93B1Q9H1C4 597 aa8.46□□□□□ -1.06
RTF1-203ENST00000473214 CADPSQ9ULU8 1353 aa8.46□□□□□ -1.06
RTF1-203ENST00000473214 SSTR3P32745 418 aaPredicted RBP8.45□□□□□ -1.06
RTF1-203ENST00000473214 IRX6P78412 446 aaPredicted RBP8.45□□□□□ -1.06
RTF1-203ENST00000473214 TMED8Q6PL24 325 aaPredicted RBP8.45□□□□□ -1.06
RTF1-203ENST00000473214 DRC1Q96MC2 740 aa8.45□□□□□ -1.06
RTF1-203ENST00000473214 ZNF330Q9Y3S2 320 aaPredicted RBP8.45□□□□□ -1.06
RTF1-203ENST00000473214 SMARCA2P51531 1590 aa8.44□□□□□ -1.06
RTF1-203ENST00000473214 PARP9Q8IXQ6 854 aa8.44□□□□□ -1.06
RTF1-203ENST00000473214 RBM47A0AV96 593 aaKnown RBP8.43□□□□□ -1.06
RTF1-203ENST00000473214 NDUFV2P19404 249 aa8.43□□□□□ -1.06
RTF1-203ENST00000473214 KCNH2Q12809 1159 aa8.43□□□□□ -1.06
RTF1-203ENST00000473214 NOL8Q76FK4 1167 aaKnown RBP8.43□□□□□ -1.06
RTF1-203ENST00000473214 MPNDQ8N594 471 aa8.43□□□□□ -1.06
RTF1-203ENST00000473214 BAP1Q92560 729 aa8.43□□□□□ -1.06
RTF1-203ENST00000473214 MOXD2PA6NHM9 499 aa8.42□□□□□ -1.06
RTF1-203ENST00000473214 DESI1Q6ICB0 168 aa8.42□□□□□ -1.06
RTF1-203ENST00000473214 PRR7Q8TB68 274 aa8.42□□□□□ -1.06
RTF1-203ENST00000473214 TLL2Q9Y6L7 1015 aa8.42□□□□□ -1.06
RTF1-203ENST00000473214 NCAPD3P42695 1498 aa8.42□□□□□ -1.06
RTF1-203ENST00000473214 VARSP26640 1264 aaKnown RBP8.41□□□□□ -1.06
RTF1-203ENST00000473214 SUZ12Q15022 739 aaKnown RBP8.41□□□□□ -1.06
RTF1-203ENST00000473214 LINC01559Q495D7 138 aa8.41□□□□□ -1.06
RTF1-203ENST00000473214 ZNF511Q8NB15 262 aa8.41□□□□□ -1.06
RTF1-203ENST00000473214 SREK1Q8WXA9 508 aaKnown RBP8.41□□□□□ -1.06
RTF1-203ENST00000473214 USTQ9Y2C2 406 aa8.41□□□□□ -1.06
RTF1-203ENST00000473214 KIF21AQ7Z4S6 1674 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 ANKRD62A6NC57 917 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 SPDYE5A6NIY4 337 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 MTMR2Q13614 643 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 MRRFQ96E11 262 aaKnown RBP8.4□□□□□ -1.06
RTF1-203ENST00000473214 PRDM16Q9HAZ2 1276 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 COG6Q9Y2V7 657 aa8.4□□□□□ -1.06
RTF1-203ENST00000473214 CSB-PGBD3P0DP91 1061 aa8.39□□□□□ -1.07
RTF1-203ENST00000473214 VSIG8P0DPA2 414 aa8.39□□□□□ -1.07
RTF1-203ENST00000473214 MRPL14Q6P1L8 145 aaKnown RBP8.39□□□□□ -1.07
RTF1-203ENST00000473214 KIAA1522Q9P206 1035 aaPredicted RBP8.39□□□□□ -1.07
RTF1-203ENST00000473214 ATAD2BQ9ULI0 1458 aa8.38□□□□□ -1.07
RTF1-203ENST00000473214 NNTQ13423 1086 aa8.38□□□□□ -1.07
RTF1-203ENST00000473214 AMHR2Q16671 573 aa8.38□□□□□ -1.07
RTF1-203ENST00000473214 ZNF326Q5BKZ1 582 aaKnown RBP8.38□□□□□ -1.07
RTF1-203ENST00000473214 SOBPA7XYQ1 873 aa8.37□□□□□ -1.07
RTF1-203ENST00000473214 GJA5P36382 358 aa8.37□□□□□ -1.07
RTF1-203ENST00000473214 SCARF1Q14162 830 aa8.37□□□□□ -1.07
RTF1-203ENST00000473214 CALR3Q96L12 384 aaKnown RBP8.37□□□□□ -1.07
RTF1-203ENST00000473214 PURBQ96QR8 312 aaKnown RBP8.37□□□□□ -1.07
RTF1-203ENST00000473214 KLF16Q9BXK1 252 aaPredicted RBP8.37□□□□□ -1.07
RTF1-203ENST00000473214 TIMP2P16035 220 aa8.36□□□□□ -1.07
RTF1-203ENST00000473214 TTLL12Q14166 644 aaPredicted RBP8.36□□□□□ -1.07
RTF1-203ENST00000473214 MARCH6O60337 910 aa8.35□□□□□ -1.07
RTF1-203ENST00000473214 KCNMA1Q12791 1236 aa8.35□□□□□ -1.07
RTF1-203ENST00000473214 LYPD8Q6UX82 237 aa8.35□□□□□ -1.07
RTF1-203ENST00000473214 GIGYF2Q6Y7W6 1299 aaKnown RBP8.35□□□□□ -1.07
RTF1-203ENST00000473214 PBXIP1Q96AQ6 731 aa8.35□□□□□ -1.07
RTF1-203ENST00000473214 HIRIP3Q9BW71 556 aaPredicted RBP8.35□□□□□ -1.07
RTF1-203ENST00000473214 PPP1R1BQ9UD71 204 aaPredicted RBP8.35□□□□□ -1.07
RTF1-203ENST00000473214 BAZ1AQ9NRL2 1556 aaPredicted RBP8.35□□□□□ -1.07
RTF1-203ENST00000473214 ADH1CP00326 375 aa8.34□□□□□ -1.07
RTF1-203ENST00000473214 TCF3P15923 654 aa8.34□□□□□ -1.07
RTF1-203ENST00000473214 GSK3AP49840 483 aa8.34□□□□□ -1.07
RTF1-203ENST00000473214 CDK15Q96Q40 435 aa8.34□□□□□ -1.07
RTF1-203ENST00000473214 BEGAINQ9BUH8 593 aa8.34□□□□□ -1.07
RTF1-203ENST00000473214 ATP1B4Q9UN42 357 aaPredicted RBP8.34□□□□□ -1.07
RTF1-203ENST00000473214 CARNS1A5YM72 827 aa8.33□□□□□ -1.08
RTF1-203ENST00000473214 PLEKHD1A6NEE1 506 aa8.33□□□□□ -1.08
RTF1-203ENST00000473214 WDR4P57081 412 aaKnown RBP8.33□□□□□ -1.08
RTF1-203ENST00000473214 RSBN1LQ6PCB5 846 aaPredicted RBP8.33□□□□□ -1.08
RTF1-203ENST00000473214 FAM174AQ8TBP5 190 aa8.33□□□□□ -1.08
RTF1-203ENST00000473214 C8orf37Q96NL8 207 aa8.33□□□□□ -1.08
RTF1-203ENST00000473214 TBC1D2Q9BYX2 928 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms