RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RARSP54136 660 aaKnown RBP23.67■■□□□ 1.38
COL9A3-205ENST00000466192 NUTM2GQ5VZR2 741 aa23.67■■□□□ 1.38
COL9A3-205ENST00000466192 ESCO1Q5FWF5 840 aa23.66■■□□□ 1.38
COL9A3-205ENST00000466192 PAK3O75914 559 aaPredicted RBP23.65■■□□□ 1.38
COL9A3-205ENST00000466192 PROSER2Q86WR7 435 aaPredicted RBP23.65■■□□□ 1.38
COL9A3-205ENST00000466192 ABTB2Q8N961 1025 aa23.65■■□□□ 1.38
COL9A3-205ENST00000466192 STRCP1A6NGW2 1772 aa23.65■■□□□ 1.38
COL9A3-205ENST00000466192 SBNO1A3KN83 1393 aa23.65■■□□□ 1.38
COL9A3-205ENST00000466192 AEBP1Q8IUX7 1158 aa23.65■■□□□ 1.38
COL9A3-205ENST00000466192 FLT4P35916 1363 aa23.64■■□□□ 1.37
COL9A3-205ENST00000466192 SULT6B1Q6IMI4 303 aa23.63■■□□□ 1.37
COL9A3-205ENST00000466192 EXOSC9Q06265 439 aaKnown RBP23.62■■□□□ 1.37
COL9A3-205ENST00000466192 ORAI2Q96SN7 254 aa23.61■■□□□ 1.37
COL9A3-205ENST00000466192 HSPA2P54652 639 aa23.6■■□□□ 1.37
COL9A3-205ENST00000466192 CT47B1P0C2W7 299 aaPredicted RBP23.59■■□□□ 1.37
COL9A3-205ENST00000466192 AMPHP49418 695 aa23.59■■□□□ 1.37
COL9A3-205ENST00000466192 PSME1Q06323 249 aa23.59■■□□□ 1.37
COL9A3-205ENST00000466192 LTN1O94822 1766 aa23.59■■□□□ 1.37
COL9A3-205ENST00000466192 PDE3AQ14432 1141 aa23.59■■□□□ 1.37
COL9A3-205ENST00000466192 THUMPD2Q9BTF0 503 aaKnown RBP23.59■■□□□ 1.37
COL9A3-205ENST00000466192 BCL2L13Q9BXK5 485 aa23.59■■□□□ 1.37
COL9A3-205ENST00000466192 FRAT1Q92837 279 aaPredicted RBP23.58■■□□□ 1.36
COL9A3-205ENST00000466192 CANXP27824 592 aaKnown RBP23.57■■□□□ 1.36
COL9A3-205ENST00000466192 ARHGEF10O15013 1369 aa23.57■■□□□ 1.36
COL9A3-205ENST00000466192 C19orf44Q9H6X5 657 aa23.57■■□□□ 1.36
COL9A3-205ENST00000466192 KDM4FA0A1W2PPD8 638 aa23.56■■□□□ 1.36
COL9A3-205ENST00000466192 KIF24Q5T7B8 1368 aa23.56■■□□□ 1.36
COL9A3-205ENST00000466192 PANK1Q8TE04 598 aa23.55■■□□□ 1.36
COL9A3-205ENST00000466192 FOXO3O43524 673 aa23.54■■□□□ 1.36
COL9A3-205ENST00000466192 HOXC9P31274 260 aa23.54■■□□□ 1.36
COL9A3-205ENST00000466192 LMOD3Q0VAK6 560 aa23.54■■□□□ 1.36
COL9A3-205ENST00000466192 C1orf167Q5SNV9 1468 aa23.54■■□□□ 1.36
COL9A3-205ENST00000466192 CALD1Q05682 793 aaKnown RBP23.54■■□□□ 1.36
COL9A3-205ENST00000466192 LAS1LQ9Y4W2 734 aaKnown RBP23.54■■□□□ 1.36
COL9A3-205ENST00000466192 NFAT5O94916 1531 aa23.54■■□□□ 1.36
COL9A3-205ENST00000466192 KIF1AQ12756 1690 aa23.53■■□□□ 1.36
COL9A3-205ENST00000466192 TMEM94Q12767 1356 aa23.53■■□□□ 1.36
COL9A3-205ENST00000466192 FAM83GA6ND36 823 aa23.53■■□□□ 1.36
COL9A3-205ENST00000466192 TRPM3Q9HCF6 1732 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-205ENST00000466192 EYA1Q99502 592 aa23.52■■□□□ 1.36
COL9A3-205ENST00000466192 KDRP35968 1356 aa23.52■■□□□ 1.36
COL9A3-205ENST00000466192 XPCQ01831 940 aaPredicted RBP23.52■■□□□ 1.36
COL9A3-205ENST00000466192 TNNQ9UQP3 1299 aa23.52■■□□□ 1.36
COL9A3-205ENST00000466192 IGSF1Q8N6C5 1336 aa23.52■■□□□ 1.36
COL9A3-205ENST00000466192 ZNF853P0CG23 659 aa23.51■■□□□ 1.35
COL9A3-205ENST00000466192 IFT57Q9NWB7 429 aa23.51■■□□□ 1.35
COL9A3-205ENST00000466192 STRCQ7RTU9 1775 aa23.51■■□□□ 1.35
COL9A3-205ENST00000466192 COG6Q9Y2V7 657 aa23.51■■□□□ 1.35
COL9A3-205ENST00000466192 LMTK3Q96Q04 1460 aa23.51■■□□□ 1.35
COL9A3-205ENST00000466192 GNAI1P63096 354 aa23.5■■□□□ 1.35
COL9A3-205ENST00000466192 DCTN1Q14203 1278 aa23.5■■□□□ 1.35
COL9A3-205ENST00000466192 SSH1Q8WYL5 1049 aa23.5■■□□□ 1.35
COL9A3-205ENST00000466192 KDM2BQ8NHM5 1336 aa23.49■■□□□ 1.35
COL9A3-205ENST00000466192 RLBP1P12271 317 aa23.49■■□□□ 1.35
COL9A3-205ENST00000466192 SMC4Q9NTJ3 1288 aa23.49■■□□□ 1.35
COL9A3-205ENST00000466192 RTL1A6NKG5 1358 aa23.48■■□□□ 1.35
COL9A3-205ENST00000466192 MBIPQ9NS73 344 aa23.48■■□□□ 1.35
COL9A3-205ENST00000466192 MST1RQ04912 1400 aa23.48■■□□□ 1.35
COL9A3-205ENST00000466192 TCERG1O14776 1098 aaKnown RBP23.47■■□□□ 1.35
COL9A3-205ENST00000466192 CFAP44Q96MT7 982 aa23.47■■□□□ 1.35
COL9A3-205ENST00000466192 XIRP1Q702N8 1843 aaKnown RBP23.47■■□□□ 1.35
COL9A3-205ENST00000466192 NCOA3Q9Y6Q9 1424 aa23.47■■□□□ 1.35
COL9A3-205ENST00000466192 SKAP1Q86WV1 359 aa23.47■■□□□ 1.35
COL9A3-205ENST00000466192 PHRF1Q9P1Y6 1649 aaKnown RBP23.46■■□□□ 1.35
COL9A3-205ENST00000466192 DCCP43146 1447 aa23.46■■□□□ 1.35
COL9A3-205ENST00000466192 ATF3P18847 181 aa23.46■■□□□ 1.35
COL9A3-205ENST00000466192 CENPQQ7L2Z9 268 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-205ENST00000466192 ZKSCAN2Q63HK3 967 aa23.45■■□□□ 1.35
COL9A3-205ENST00000466192 BCL11AQ9H165 835 aa23.45■■□□□ 1.35
COL9A3-205ENST00000466192 KRT28Q7Z3Y7 464 aa23.45■■□□□ 1.34
COL9A3-205ENST00000466192 KCNH5Q8NCM2 988 aa23.45■■□□□ 1.34
COL9A3-205ENST00000466192 CLUAP1Q96AJ1 413 aa23.45■■□□□ 1.34
COL9A3-205ENST00000466192 LTV1Q96GA3 475 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-205ENST00000466192 SLIT3O75094 1523 aa23.44■■□□□ 1.34
COL9A3-205ENST00000466192 MTHFSDQ2M296 383 aaKnown RBP23.44■■□□□ 1.34
COL9A3-205ENST00000466192 IP6K1Q92551 441 aa23.44■■□□□ 1.34
COL9A3-205ENST00000466192 ALDH1L2Q3SY69 923 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 MCM10Q7L590 875 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 TSPYL6Q8N831 410 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 ALS2Q96Q42 1657 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 RGPD2P0DJD1 1756 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 VAMP4O75379 141 aa23.42■■□□□ 1.34
COL9A3-205ENST00000466192 LMOD2Q6P5Q4 547 aa23.41■■□□□ 1.34
COL9A3-205ENST00000466192 ZNF428Q96B54 188 aa23.41■■□□□ 1.34
COL9A3-205ENST00000466192 GCP02774 474 aa23.4■■□□□ 1.34
COL9A3-205ENST00000466192 TRIM27P14373 513 aa23.4■■□□□ 1.34
COL9A3-205ENST00000466192 DZIP1LQ8IYY4 767 aaKnown RBP23.4■■□□□ 1.34
COL9A3-205ENST00000466192 NOB1Q9ULX3 412 aaKnown RBP23.4■■□□□ 1.34
COL9A3-205ENST00000466192 USP19O94966 1318 aa23.39■■□□□ 1.33
COL9A3-205ENST00000466192 PLEKHG5O94827 1062 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 ATF7IPQ6VMQ6 1270 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 C8orf58Q8NAV2 365 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 ZBTB7CA1YPR0 619 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 ELL2O00472 640 aaPredicted RBP23.38■■□□□ 1.33
COL9A3-205ENST00000466192 MS4A1P11836 297 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 CADPS2Q86UW7 1296 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 FTSJ3Q8IY81 847 aaKnown RBP23.38■■□□□ 1.33
COL9A3-205ENST00000466192 CRB1P82279 1406 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 KIF16BQ96L93 1317 aa23.38■■□□□ 1.33
COL9A3-205ENST00000466192 MVPQ14764 893 aaKnown RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms