RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS41-211ENST00000466017 ACIN1Q9UKV3 1341 aaKnown RBP8.22□□□□□ -1.09
VPS41-211ENST00000466017 CFAP99D6REC4 459 aa8.21□□□□□ -1.1
VPS41-211ENST00000466017 DXOO77932 396 aaKnown RBP8.21□□□□□ -1.1
VPS41-211ENST00000466017 Q3C1V9 767 aa8.21□□□□□ -1.1
VPS41-211ENST00000466017 RTL5Q5HYW3 569 aaPredicted RBP8.21□□□□□ -1.1
VPS41-211ENST00000466017 EFCAB2Q5VUJ9 269 aa8.21□□□□□ -1.1
VPS41-211ENST00000466017 IL27Q8NEV9 243 aa8.21□□□□□ -1.1
VPS41-211ENST00000466017 ITSN2Q9NZM3 1697 aa8.21□□□□□ -1.1
VPS41-211ENST00000466017 KIAA1107Q9UPP5 1409 aa8.2□□□□□ -1.1
VPS41-211ENST00000466017 SLC19A1P41440 591 aa8.2□□□□□ -1.1
VPS41-211ENST00000466017 PTPN23Q9H3S7 1636 aa8.2□□□□□ -1.1
VPS41-211ENST00000466017 GLI2P10070 1586 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 ABCA9Q8IUA7 1624 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 RGS20O76081 388 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 GGCXP38435 758 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 FAM50AQ14320 339 aaKnown RBP8.19□□□□□ -1.1
VPS41-211ENST00000466017 PRR7Q8TB68 274 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 PLEKHH2Q8IVE3 1493 aa8.19□□□□□ -1.1
VPS41-211ENST00000466017 CDC42BPAQ5VT25 1732 aa8.18□□□□□ -1.1
VPS41-211ENST00000466017 SPRYD7Q5W111 196 aa8.18□□□□□ -1.1
VPS41-211ENST00000466017 RETREG3Q86VR2 466 aa8.18□□□□□ -1.1
VPS41-211ENST00000466017 LCE2BO14633 110 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 PER1O15534 1290 aaPredicted RBP8.17□□□□□ -1.1
VPS41-211ENST00000466017 LILRB3O75022 631 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 MTMR2Q13614 643 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 V9GY48 417 aaPredicted RBP8.17□□□□□ -1.1
VPS41-211ENST00000466017 ROCK1Q13464 1354 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 AKNAQ7Z591 1439 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 MBD5Q9P267 1494 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 PREX2Q70Z35 1606 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 CDC42BPBQ9Y5S2 1711 aa8.17□□□□□ -1.1
VPS41-211ENST00000466017 ABCC5O15440 1437 aa8.16□□□□□ -1.1
VPS41-211ENST00000466017 JUNDP17535 347 aa8.16□□□□□ -1.1
VPS41-211ENST00000466017 CD109Q6YHK3 1445 aa8.16□□□□□ -1.1
VPS41-211ENST00000466017 CCDC24Q8N4L8 307 aa8.16□□□□□ -1.1
VPS41-211ENST00000466017 ZNF644Q9H582 1327 aaPredicted RBP8.16□□□□□ -1.1
VPS41-211ENST00000466017 MYO5CQ9NQX4 1742 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 ARHGEF5Q12774 1597 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 TTC37Q6PGP7 1564 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 CAMSAP2Q08AD1 1489 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 DAPK1P53355 1430 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 PTPRKQ15262 1439 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 TSPY4P0CV99 314 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 TSPY10P0CW01 314 aa8.15□□□□□ -1.1
VPS41-211ENST00000466017 CLK2P49760 499 aaKnown RBP8.15□□□□□ -1.1
VPS41-211ENST00000466017 HFM1A2PYH4 1435 aa8.14□□□□□ -1.11
VPS41-211ENST00000466017 SETD5Q9C0A6 1442 aa8.14□□□□□ -1.11
VPS41-211ENST00000466017 GJA5P36382 358 aa8.14□□□□□ -1.11
VPS41-211ENST00000466017 PKD2L1Q9P0L9 805 aa8.14□□□□□ -1.11
VPS41-211ENST00000466017 DNMT1P26358 1616 aaKnown RBP8.14□□□□□ -1.11
VPS41-211ENST00000466017 ARHGAP5Q13017 1502 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 ADGRL2O95490 1459 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 NEO1Q92859 1461 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 SHANK2Q9UPX8 1470 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 RTEL1-TNFRSF6BF6WH68 1400 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 SKIV2LQ15477 1246 aaKnown RBP8.13□□□□□ -1.11
VPS41-211ENST00000466017 ZNF697Q5TEC3 545 aa8.13□□□□□ -1.11
VPS41-211ENST00000466017 ZNF598Q86UK7 904 aaKnown RBP8.13□□□□□ -1.11
VPS41-211ENST00000466017 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS41-211ENST00000466017 ZNF777Q9ULD5 760 aaPredicted RBP8.13□□□□□ -1.11
VPS41-211ENST00000466017 NCOA1Q15788 1441 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 TNFRSF10AO00220 468 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 GDF9O60383 454 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 GFRA3O60609 400 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 HNRNPMP52272 730 aaKnown RBP eCLIP8.12□□□□□ -1.11
VPS41-211ENST00000466017 SKOR1P84550 965 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 FAM69CQ0P6D2 419 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 DIXDC1Q155Q3 683 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 SH3D19Q5HYK7 790 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 IRX2Q9BZI1 471 aaPredicted RBP8.12□□□□□ -1.11
VPS41-211ENST00000466017 ZBTB3Q9H5J0 574 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 SAMD9LQ8IVG5 1584 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 FANCAO15360 1455 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 NAIPQ13075 1403 aa8.12□□□□□ -1.11
VPS41-211ENST00000466017 ANKRD30AQ9BXX3 1397 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 CLSPNQ9HAW4 1339 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 MAST1Q9Y2H9 1570 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 ITGAEP38570 1179 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 CTDSPL2Q05D32 466 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 DDRGK1Q96HY6 314 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 NUDT12Q9BQG2 462 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 CCDC141Q6ZP82 1450 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 MAP3K4Q9Y6R4 1608 aa8.11□□□□□ -1.11
VPS41-211ENST00000466017 DIP2BQ9P265 1576 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 ARHGEF12Q9NZN5 1544 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 NUTM2BA6NNL0 878 aaPredicted RBP8.1□□□□□ -1.11
VPS41-211ENST00000466017 NUTM2EB1AL46 878 aaPredicted RBP8.1□□□□□ -1.11
VPS41-211ENST00000466017 FOXC1Q12948 553 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 TUSC1Q2TAM9 212 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 NUTM2DQ5VT03 806 aaPredicted RBP8.1□□□□□ -1.11
VPS41-211ENST00000466017 PRPF38BQ5VTL8 546 aaKnown RBP8.1□□□□□ -1.11
VPS41-211ENST00000466017 LYPD8Q6UX82 237 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 NUTM2AQ8IVF1 878 aaPredicted RBP8.1□□□□□ -1.11
VPS41-211ENST00000466017 RSPH6AQ9H0K4 717 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 MAP10Q9P2G4 905 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 CFAP74Q9C0B2 1584 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 RAB3GAP2Q9H2M9 1393 aa8.1□□□□□ -1.11
VPS41-211ENST00000466017 ABCC1P33527 1531 aa8.09□□□□□ -1.11
VPS41-211ENST00000466017 TSC1Q92574 1164 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms