RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 CHGAP10645 457 aaKnown RBP24.43■■□□□ 1.5
SDF4-205ENST00000465727 TMEM132EQ6IEE7 984 aa24.43■■□□□ 1.5
SDF4-205ENST00000465727 TSPOAP1O95153 1857 aa24.43■■□□□ 1.5
SDF4-205ENST00000465727 A0A1W2PP64 1363 aa24.43■■□□□ 1.5
SDF4-205ENST00000465727 FOXD4L1Q9NU39 408 aa24.42■■□□□ 1.5
SDF4-205ENST00000465727 MAP7D2Q96T17 732 aa24.42■■□□□ 1.5
SDF4-205ENST00000465727 PNPLA6Q8IY17 1366 aa24.41■■□□□ 1.5
SDF4-205ENST00000465727 NPATQ14207 1427 aa24.4■■□□□ 1.5
SDF4-205ENST00000465727 CALD1Q05682 793 aaKnown RBP24.4■■□□□ 1.5
SDF4-205ENST00000465727 RBM42Q9BTD8 480 aaKnown RBP24.39■■□□□ 1.5
SDF4-205ENST00000465727 ZNF500O60304 480 aaPredicted RBP24.39■■□□□ 1.49
SDF4-205ENST00000465727 DIAPH1O60610 1272 aaKnown RBP24.39■■□□□ 1.49
SDF4-205ENST00000465727 CYP2E1P05181 493 aaPredicted RBP24.39■■□□□ 1.49
SDF4-205ENST00000465727 NOL7Q9UMY1 257 aaKnown RBP24.39■■□□□ 1.49
SDF4-205ENST00000465727 ZFYVE9O95405 1425 aa24.38■■□□□ 1.49
SDF4-205ENST00000465727 PDLIM2Q96JY6 352 aa24.38■■□□□ 1.49
SDF4-205ENST00000465727 CWC22Q9HCG8 908 aaKnown RBP24.38■■□□□ 1.49
SDF4-205ENST00000465727 FCHSD2O94868 740 aa24.37■■□□□ 1.49
SDF4-205ENST00000465727 ZSCAN23Q3MJ62 389 aa24.37■■□□□ 1.49
SDF4-205ENST00000465727 AK9Q5TCS8 1911 aa24.36■■□□□ 1.49
SDF4-205ENST00000465727 CAMSAP1Q5T5Y3 1602 aa24.36■■□□□ 1.49
SDF4-205ENST00000465727 ABCC4O15439 1325 aa24.36■■□□□ 1.49
SDF4-205ENST00000465727 CABP2Q9NPB3 220 aa24.36■■□□□ 1.49
SDF4-205ENST00000465727 LRRC7Q96NW7 1537 aa24.36■■□□□ 1.49
SDF4-205ENST00000465727 ATAD2Q6PL18 1390 aa24.35■■□□□ 1.49
SDF4-205ENST00000465727 PIK3C2BO00750 1634 aa24.35■■□□□ 1.49
SDF4-205ENST00000465727 MCM5P33992 734 aa24.35■■□□□ 1.49
SDF4-205ENST00000465727 LMBRD1Q9NUN5 540 aa24.35■■□□□ 1.49
SDF4-205ENST00000465727 MCTP1Q6DN14 999 aa24.34■■□□□ 1.49
SDF4-205ENST00000465727 MRPL50Q8N5N7 158 aaKnown RBP24.34■■□□□ 1.49
SDF4-205ENST00000465727 GGNBP2Q9H3C7 697 aa24.34■■□□□ 1.49
SDF4-205ENST00000465727 VGFO15240 615 aaPredicted RBP24.34■■□□□ 1.49
SDF4-205ENST00000465727 FAM135BQ49AJ0 1406 aa24.34■■□□□ 1.49
SDF4-205ENST00000465727 TERF2IPQ9NYB0 399 aa24.34■■□□□ 1.49
SDF4-205ENST00000465727 HECW2Q9P2P5 1572 aa24.34■■□□□ 1.49
SDF4-205ENST00000465727 CLTCQ00610 1675 aaKnown RBP24.34■■□□□ 1.49
SDF4-205ENST00000465727 KIF24Q5T7B8 1368 aa24.33■■□□□ 1.49
SDF4-205ENST00000465727 CAVIN1Q6NZI2 390 aaKnown RBP24.33■■□□□ 1.48
SDF4-205ENST00000465727 SIRT2Q8IXJ6 389 aa24.33■■□□□ 1.48
SDF4-205ENST00000465727 NEXMIFQ5QGS0 1516 aa24.33■■□□□ 1.48
SDF4-205ENST00000465727 FYB1O15117 783 aa24.32■■□□□ 1.48
SDF4-205ENST00000465727 CSPP1Q1MSJ5 1256 aa24.32■■□□□ 1.48
SDF4-205ENST00000465727 VAMP4O75379 141 aa24.31■■□□□ 1.48
SDF4-205ENST00000465727 FRMPD1Q5SYB0 1578 aa24.31■■□□□ 1.48
SDF4-205ENST00000465727 KIF20BQ96Q89 1820 aa24.31■■□□□ 1.48
SDF4-205ENST00000465727 CFAP65Q6ZU64 1925 aaKnown RBP24.31■■□□□ 1.48
SDF4-205ENST00000465727 MTERF4Q7Z6M4 381 aaKnown RBP24.3■■□□□ 1.48
SDF4-205ENST00000465727 GSPT1P15170 499 aaKnown RBP24.3■■□□□ 1.48
SDF4-205ENST00000465727 C1orf115Q9H7X2 142 aa24.29■■□□□ 1.48
SDF4-205ENST00000465727 YEATS2Q9ULM3 1422 aa24.29■■□□□ 1.48
SDF4-205ENST00000465727 INTS3Q68E01 1043 aaKnown RBP24.28■■□□□ 1.48
SDF4-205ENST00000465727 PLEKHM2Q8IWE5 1019 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 USP26Q9BXU7 913 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 RBSNQ9H1K0 784 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 CD163L1Q9NR16 1453 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 ST18O60284 1047 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 TTC22Q5TAA0 569 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 API5Q9BZZ5 524 aaKnown RBP24.28■■□□□ 1.48
SDF4-205ENST00000465727 ZKSCAN5Q9Y2L8 839 aa24.28■■□□□ 1.48
SDF4-205ENST00000465727 NCLP19338 710 aaKnown RBP24.27■■□□□ 1.48
SDF4-205ENST00000465727 GNAI1P63096 354 aa24.27■■□□□ 1.48
SDF4-205ENST00000465727 IFT57Q9NWB7 429 aa24.27■■□□□ 1.48
SDF4-205ENST00000465727 SRPK2P78362 688 aaKnown RBP24.26■■□□□ 1.47
SDF4-205ENST00000465727 R3HCC1Q9Y3T6 440 aaKnown RBP24.26■■□□□ 1.47
SDF4-205ENST00000465727 CASC1Q6TDU7 716 aa24.25■■□□□ 1.47
SDF4-205ENST00000465727 DCTPP1Q9H773 170 aa24.25■■□□□ 1.47
SDF4-205ENST00000465727 ABCC3O15438 1527 aa24.25■■□□□ 1.47
SDF4-205ENST00000465727 PRIM1P49642 420 aaKnown RBP24.25■■□□□ 1.47
SDF4-205ENST00000465727 NFE2L2Q16236 605 aa24.25■■□□□ 1.47
SDF4-205ENST00000465727 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.25■■□□□ 1.47
SDF4-205ENST00000465727 PRKAR2BP31323 418 aa24.24■■□□□ 1.47
SDF4-205ENST00000465727 LRSAM1Q6UWE0 723 aa24.24■■□□□ 1.47
SDF4-205ENST00000465727 CCDC39Q9UFE4 941 aa24.24■■□□□ 1.47
SDF4-205ENST00000465727 KNDC1Q76NI1 1749 aa24.23■■□□□ 1.47
SDF4-205ENST00000465727 DYNC1I1O14576 645 aa24.23■■□□□ 1.47
SDF4-205ENST00000465727 ZNF853P0CG23 659 aa24.22■■□□□ 1.47
SDF4-205ENST00000465727 HDGFL2Q7Z4V5 671 aaPredicted RBP24.22■■□□□ 1.47
SDF4-205ENST00000465727 GPT2Q8TD30 523 aa24.21■■□□□ 1.47
SDF4-205ENST00000465727 PTPRMP28827 1452 aa24.21■■□□□ 1.47
SDF4-205ENST00000465727 UQCRHLA0A096LP55 91 aa24.2■■□□□ 1.47
SDF4-205ENST00000465727 PRPF40AO75400 957 aaKnown RBP24.2■■□□□ 1.47
SDF4-205ENST00000465727 MBD3O95983 291 aa24.2■■□□□ 1.47
SDF4-205ENST00000465727 UQCRHP07919 91 aa24.2■■□□□ 1.47
SDF4-205ENST00000465727 SIGLEC1Q9BZZ2 1709 aa24.2■■□□□ 1.46
SDF4-205ENST00000465727 REC8O95072 547 aa24.19■■□□□ 1.46
SDF4-205ENST00000465727 PKP1Q13835 747 aa24.19■■□□□ 1.46
SDF4-205ENST00000465727 TSPYL6Q8N831 410 aa24.19■■□□□ 1.46
SDF4-205ENST00000465727 RBM10P98175 930 aaKnown RBP24.19■■□□□ 1.46
SDF4-205ENST00000465727 XPCQ01831 940 aaPredicted RBP24.19■■□□□ 1.46
SDF4-205ENST00000465727 TWISTNBQ3B726 338 aaPredicted RBP24.19■■□□□ 1.46
SDF4-205ENST00000465727 FAM13BQ9NYF5 915 aa24.19■■□□□ 1.46
SDF4-205ENST00000465727 MLH3Q9UHC1 1453 aa24.18■■□□□ 1.46
SDF4-205ENST00000465727 LMOD3Q0VAK6 560 aa24.17■■□□□ 1.46
SDF4-205ENST00000465727 SASS6Q6UVJ0 657 aa24.17■■□□□ 1.46
SDF4-205ENST00000465727 MBIPQ9NS73 344 aa24.17■■□□□ 1.46
SDF4-205ENST00000465727 SAFB2Q14151 953 aaKnown RBP eCLIP24.16■■□□□ 1.46
SDF4-205ENST00000465727 ZDHHC9Q9Y397 364 aa24.16■■□□□ 1.46
SDF4-205ENST00000465727 RPAP2Q8IXW5 612 aaPredicted RBP24.15■■□□□ 1.46
SDF4-205ENST00000465727 ANKRD44Q8N8A2 993 aa24.15■■□□□ 1.46
SDF4-205ENST00000465727 TMEM63CQ9P1W3 806 aa24.15■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms