RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RARSP54136 660 aaKnown RBP22.62■■□□□ 1.21
CCDC88B-204ENST00000463837 ALDH1L2Q3SY69 923 aa22.62■■□□□ 1.21
CCDC88B-204ENST00000463837 SLC4A2P04920 1241 aa22.61■■□□□ 1.21
CCDC88B-204ENST00000463837 VPS37DQ86XT2 251 aa22.61■■□□□ 1.21
CCDC88B-204ENST00000463837 FMNL2Q96PY5 1086 aa22.61■■□□□ 1.21
CCDC88B-204ENST00000463837 BRMS1Q9HCU9 246 aa22.61■■□□□ 1.21
CCDC88B-204ENST00000463837 GPRASP1Q5JY77 1395 aa22.6■■□□□ 1.21
CCDC88B-204ENST00000463837 PDCL2Q8N4E4 241 aa22.6■■□□□ 1.21
CCDC88B-204ENST00000463837 NEUROD6Q96NK8 337 aa22.6■■□□□ 1.21
CCDC88B-204ENST00000463837 JMYQ8N9B5 988 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 CUL7Q14999 1698 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 C20orf194Q5TEA3 1177 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 TMEM57Q8N5G2 664 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 SMARCE1Q969G3 411 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 PLEKHH1Q9ULM0 1364 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 AFAP1Q8N556 730 aa22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 CTDP1Q9Y5B0 961 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-204ENST00000463837 WASHC4Q2M389 1173 aa22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 NLRP2Q9NX02 1062 aa22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 ZNF692Q9BU19 519 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 NSD3Q9BZ95 1437 aa22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 TMPOP42166 694 aaKnown RBP22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 PIP4K2AP48426 406 aaPredicted RBP22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 TBC1D2Q9BYX2 928 aa22.58■■□□□ 1.21
CCDC88B-204ENST00000463837 FILIP1LQ4L180 1135 aa22.58■■□□□ 1.2
CCDC88B-204ENST00000463837 STK38Q15208 465 aa22.57■■□□□ 1.2
CCDC88B-204ENST00000463837 AIMP1Q12904 312 aaKnown RBP22.57■■□□□ 1.2
CCDC88B-204ENST00000463837 ABCC5O15440 1437 aa22.57■■□□□ 1.2
CCDC88B-204ENST00000463837 ABCA10Q8WWZ4 1543 aa22.57■■□□□ 1.2
CCDC88B-204ENST00000463837 PRAM1Q96QH2 718 aa22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 PPP6R1Q9UPN7 881 aa22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 TTLL5Q6EMB2 1281 aa22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 NAP1L1P55209 391 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 CEBPZQ03701 1054 aaKnown RBP22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 NLRP6P59044 892 aa22.56■■□□□ 1.2
CCDC88B-204ENST00000463837 DUSP27Q5VZP5 1158 aa22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 LARP1BQ659C4 914 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 NFE2L2Q16236 605 aa22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 NUP62CLQ9H1M0 184 aa22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 CDK13Q14004 1512 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 CAMSAP2Q08AD1 1489 aa22.55■■□□□ 1.2
CCDC88B-204ENST00000463837 MCM5P33992 734 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 LEKR1Q6ZMV7 388 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 SART3Q15020 963 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 CFAP45Q9UL16 551 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 CBFA2T2O43439 604 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 TAF3Q5VWG9 929 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 DACH1Q9UI36 760 aa22.54■■□□□ 1.2
CCDC88B-204ENST00000463837 SNAPC4Q5SXM2 1469 aa22.53■■□□□ 1.2
CCDC88B-204ENST00000463837 KDM4AO75164 1064 aa22.53■■□□□ 1.2
CCDC88B-204ENST00000463837 PDRG1Q9NUG6 133 aa22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 KIF2AO00139 706 aaPredicted RBP22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 TXNDC2Q86VQ3 553 aa22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 CDK19Q9BWU1 502 aa22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 TCEAL9Q9UHQ7 104 aa22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 MAPKBP1O60336 1514 aa22.52■■□□□ 1.2
CCDC88B-204ENST00000463837 PLEKHO1Q53GL0 409 aaPredicted RBP22.52■■□□□ 1.19
CCDC88B-204ENST00000463837 SYCE3A1L190 88 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 HDGFL1Q5TGJ6 251 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 CAGE1Q8TC20 777 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 SPATA32Q96LK8 384 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 SLC52A1Q9NWF4 448 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 KRT32Q14532 448 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 CEP57L1Q8IYX8 460 aa22.51■■□□□ 1.19
CCDC88B-204ENST00000463837 SULT6B1Q6IMI4 303 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 TNPO1Q92973 898 aaKnown RBP22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 RBM33Q96EV2 1170 aaKnown RBP22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 PDCL3Q9H2J4 239 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 KIAA0586Q9BVV6 1533 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 BLOC1S2Q6QNY1 142 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 TBC1D32Q96NH3 1257 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 THEMISQ8N1K5 641 aaPredicted RBP22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 IQGAP2Q13576 1575 aa22.5■■□□□ 1.19
CCDC88B-204ENST00000463837 MAP3K11Q16584 847 aa22.49■■□□□ 1.19
CCDC88B-204ENST00000463837 CCDC183Q5T5S1 534 aa22.49■■□□□ 1.19
CCDC88B-204ENST00000463837 PROSER2Q86WR7 435 aaPredicted RBP22.49■■□□□ 1.19
CCDC88B-204ENST00000463837 TBC1D2BQ9UPU7 963 aa22.49■■□□□ 1.19
CCDC88B-204ENST00000463837 CABP1Q9NZU7 370 aa22.49■■□□□ 1.19
CCDC88B-204ENST00000463837 H0YHG0 523 aa22.48■■□□□ 1.19
CCDC88B-204ENST00000463837 SERPINC1P01008 464 aa22.48■■□□□ 1.19
CCDC88B-204ENST00000463837 DNAJC2Q99543 621 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-204ENST00000463837 ERLIN1O75477 346 aa22.48■■□□□ 1.19
CCDC88B-204ENST00000463837 SSH1Q8WYL5 1049 aa22.47■■□□□ 1.19
CCDC88B-204ENST00000463837 RAD21O60216 631 aa22.47■■□□□ 1.19
CCDC88B-204ENST00000463837 ME1P48163 572 aa22.47■■□□□ 1.19
CCDC88B-204ENST00000463837 STK3Q13188 491 aa22.47■■□□□ 1.19
CCDC88B-204ENST00000463837 DCTN1Q14203 1278 aa22.47■■□□□ 1.19
CCDC88B-204ENST00000463837 ATP2B1P20020 1258 aa22.46■■□□□ 1.19
CCDC88B-204ENST00000463837 EIF3JO75822 258 aaKnown RBP22.46■■□□□ 1.19
CCDC88B-204ENST00000463837 BMP2KLQ5H9B9 411 aa22.46■■□□□ 1.19
CCDC88B-204ENST00000463837 MAP4K4O95819 1239 aaPredicted RBP22.45■■□□□ 1.19
CCDC88B-204ENST00000463837 JAKMIP1Q96N16 626 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-204ENST00000463837 UBE2Q2Q8WVN8 375 aa22.45■■□□□ 1.18
CCDC88B-204ENST00000463837 RTEL1-TNFRSF6BF6WH68 1400 aa22.45■■□□□ 1.18
CCDC88B-204ENST00000463837 SMTNL1A8MU46 457 aa22.44■■□□□ 1.18
CCDC88B-204ENST00000463837 RAB11FIP3O75154 756 aa22.44■■□□□ 1.18
CCDC88B-204ENST00000463837 MYO6Q9UM54 1294 aa22.44■■□□□ 1.18
CCDC88B-204ENST00000463837 ABTB2Q8N961 1025 aa22.44■■□□□ 1.18
CCDC88B-204ENST00000463837 TXLNAP40222 546 aa22.44■■□□□ 1.18
CCDC88B-204ENST00000463837 NSD2O96028 1365 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms