RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PLEKHG1Q9ULL1 1385 aa15.68■□□□□ 0.1
HDAC4-208ENST00000463007 DLG5Q8TDM6 1919 aa15.67■□□□□ 0.1
HDAC4-208ENST00000463007 CT47B1P0C2W7 299 aaPredicted RBP15.67■□□□□ 0.1
HDAC4-208ENST00000463007 EXOSC9Q06265 439 aaKnown RBP15.67■□□□□ 0.1
HDAC4-208ENST00000463007 ELL2O00472 640 aaPredicted RBP15.67■□□□□ 0.1
HDAC4-208ENST00000463007 DZIP1LQ8IYY4 767 aaKnown RBP15.67■□□□□ 0.1
HDAC4-208ENST00000463007 RIMS1Q86UR5 1692 aaKnown RBP15.67■□□□□ 0.1
HDAC4-208ENST00000463007 MYH16Q9H6N6 1097 aa15.67■□□□□ 0.1
HDAC4-208ENST00000463007 RGPD1P0DJD0 1748 aa15.66■□□□□ 0.1
HDAC4-208ENST00000463007 AAMPQ13685 434 aa15.66■□□□□ 0.1
HDAC4-208ENST00000463007 PRR36Q9H6K5 1346 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 ZKSCAN2Q63HK3 967 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 HSCBQ8IWL3 235 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 C1orf115Q9H7X2 142 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 DIAPH1O60610 1272 aaKnown RBP15.65■□□□□ 0.1
HDAC4-208ENST00000463007 UBE2Q2Q8WVN8 375 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 PTPRUQ92729 1446 aa15.65■□□□□ 0.1
HDAC4-208ENST00000463007 FER1L4A9Z1Z3 1794 aa15.64■□□□□ 0.09
HDAC4-208ENST00000463007 FBLN1P23142 703 aa15.64■□□□□ 0.09
HDAC4-208ENST00000463007 MVPQ14764 893 aaKnown RBP15.64■□□□□ 0.09
HDAC4-208ENST00000463007 XRN1Q8IZH2 1706 aaKnown RBP15.63■□□□□ 0.09
HDAC4-208ENST00000463007 PEAK1Q9H792 1746 aa15.63■□□□□ 0.09
HDAC4-208ENST00000463007 FCHSD2O94868 740 aa15.63■□□□□ 0.09
HDAC4-208ENST00000463007 HSP90AB1P08238 724 aaKnown RBP15.63■□□□□ 0.09
HDAC4-208ENST00000463007 TXNDC2Q86VQ3 553 aa15.63■□□□□ 0.09
HDAC4-208ENST00000463007 NOB1Q9ULX3 412 aaKnown RBP15.63■□□□□ 0.09
HDAC4-208ENST00000463007 SSH2Q76I76 1423 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 TRIM27P14373 513 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 SSH1Q8WYL5 1049 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 DIP2AQ14689 1571 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 OVOS2A0A0J9YW53 1432 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 OVOS2Q6IE36 1432 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 NUDT16Q96DE0 195 aaKnown RBP15.62■□□□□ 0.09
HDAC4-208ENST00000463007 CHMP5Q9NZZ3 219 aa15.62■□□□□ 0.09
HDAC4-208ENST00000463007 IL13P35225 146 aa15.61■□□□□ 0.09
HDAC4-208ENST00000463007 NCKAP5LQ9HCH0 1330 aa15.61■□□□□ 0.09
HDAC4-208ENST00000463007 LTKP29376 864 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 NME9Q86XW9 330 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 TMEM57Q8N5G2 664 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 RBM42Q9BTD8 480 aaKnown RBP15.6■□□□□ 0.09
HDAC4-208ENST00000463007 CCDC61Q9Y6R9 512 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 PTCH1Q13635 1447 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 NCLP19338 710 aaKnown RBP15.6■□□□□ 0.09
HDAC4-208ENST00000463007 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.6■□□□□ 0.091e-6■■□□□ 13.7
HDAC4-208ENST00000463007 USP54Q70EL1 1684 aa15.6■□□□□ 0.09
HDAC4-208ENST00000463007 APBB1O00213 710 aa15.59■□□□□ 0.09
HDAC4-208ENST00000463007 TRIM44Q96DX7 344 aaPredicted RBP15.59■□□□□ 0.09
HDAC4-208ENST00000463007 MARF1Q9Y4F3 1742 aaKnown RBP15.59■□□□□ 0.09
HDAC4-208ENST00000463007 ZBTB7CA1YPR0 619 aa15.59■□□□□ 0.09
HDAC4-208ENST00000463007 HDGFP51858 240 aaKnown RBP15.59■□□□□ 0.09
HDAC4-208ENST00000463007 ANKRD45Q5TZF3 282 aa15.59■□□□□ 0.09
HDAC4-208ENST00000463007 ZRANB1Q9UGI0 708 aa15.59■□□□□ 0.09
HDAC4-208ENST00000463007 VSIG10Q8N0Z9 540 aa15.58■□□□□ 0.08
HDAC4-208ENST00000463007 EMILIN1Q9Y6C2 1016 aa15.58■□□□□ 0.08
HDAC4-208ENST00000463007 FMN2Q9NZ56 1722 aa15.58■□□□□ 0.08
HDAC4-208ENST00000463007 THUMPD2Q9BTF0 503 aaKnown RBP15.58■□□□□ 0.08
HDAC4-208ENST00000463007 RIPK4P57078 832 aa15.57■□□□□ 0.08
HDAC4-208ENST00000463007 BRPF1P55201 1214 aaPredicted RBP15.57■□□□□ 0.08
HDAC4-208ENST00000463007 ARID3AQ99856 593 aa15.57■□□□□ 0.08
HDAC4-208ENST00000463007 RGPD8O14715 1765 aaPredicted RBP15.57■□□□□ 0.08
HDAC4-208ENST00000463007 PHACTR3Q96KR7 559 aa15.57■□□□□ 0.08
HDAC4-208ENST00000463007 GRPEL1Q9HAV7 217 aa15.57■□□□□ 0.08
HDAC4-208ENST00000463007 USP6P35125 1406 aa15.56■□□□□ 0.08
HDAC4-208ENST00000463007 PRKAR2BP31323 418 aa15.56■□□□□ 0.08
HDAC4-208ENST00000463007 TPRNQ4KMQ1 711 aa15.56■□□□□ 0.08
HDAC4-208ENST00000463007 USP31Q70CQ4 1352 aa15.55■□□□□ 0.08
HDAC4-208ENST00000463007 PLEKHG3A1L390 1219 aa15.55■□□□□ 0.08
HDAC4-208ENST00000463007 ESF1Q9H501 851 aaKnown RBP15.55■□□□□ 0.08
HDAC4-208ENST00000463007 ZNF853P0CG23 659 aa15.55■□□□□ 0.08
HDAC4-208ENST00000463007 TNPO1Q92973 898 aaKnown RBP15.55■□□□□ 0.08
HDAC4-208ENST00000463007 CD2BP2O95400 341 aaKnown RBP15.54■□□□□ 0.08
HDAC4-208ENST00000463007 NFE2L2Q16236 605 aa15.54■□□□□ 0.08
HDAC4-208ENST00000463007 ATF7IPQ6VMQ6 1270 aa15.54■□□□□ 0.08
HDAC4-208ENST00000463007 GAS2L3Q86XJ1 694 aa15.54■□□□□ 0.08
HDAC4-208ENST00000463007 ZNF692Q9BU19 519 aaPredicted RBP15.54■□□□□ 0.08
HDAC4-208ENST00000463007 PIK3C2AO00443 1686 aa15.54■□□□□ 0.08
HDAC4-208ENST00000463007 PIK3R4Q99570 1358 aa15.54■□□□□ 0.08
HDAC4-208ENST00000463007 FOXD4L5Q5VV16 416 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-208ENST00000463007 FOXD4L4Q8WXT5 416 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-208ENST00000463007 HSP90AA2PQ14568 343 aaPredicted RBP15.53■□□□□ 0.08
HDAC4-208ENST00000463007 ALDH1L2Q3SY69 923 aa15.52■□□□□ 0.08
HDAC4-208ENST00000463007 DDX19BQ9UMR2 479 aa15.52■□□□□ 0.08
HDAC4-208ENST00000463007 HMOX1P09601 288 aa15.52■□□□□ 0.08
HDAC4-208ENST00000463007 ERBB4Q15303 1308 aa15.52■□□□□ 0.07
HDAC4-208ENST00000463007 MRE11P49959 708 aa15.51■□□□□ 0.07
HDAC4-208ENST00000463007 TTC21BQ7Z4L5 1316 aa15.51■□□□□ 0.07
HDAC4-208ENST00000463007 FSD2A1L4K1 749 aa15.5■□□□□ 0.07
HDAC4-208ENST00000463007 ESPNB1AK53 854 aa15.5■□□□□ 0.07
HDAC4-208ENST00000463007 ZNF428Q96B54 188 aa15.5■□□□□ 0.07
HDAC4-208ENST00000463007 COG3Q96JB2 828 aa15.5■□□□□ 0.07
HDAC4-208ENST00000463007 ZNF142P52746 1687 aaPredicted RBP15.5■□□□□ 0.07
HDAC4-208ENST00000463007 SSFA2P28290 1259 aa15.49■□□□□ 0.07
HDAC4-208ENST00000463007 CEBPAP49715 358 aaPredicted RBP15.49■□□□□ 0.07
HDAC4-208ENST00000463007 HDAC1Q13547 482 aaPredicted RBP15.49■□□□□ 0.07
HDAC4-208ENST00000463007 ACEP12821 1306 aa15.49■□□□□ 0.07
HDAC4-208ENST00000463007 TBX22Q9Y458 520 aa15.49■□□□□ 0.07
HDAC4-208ENST00000463007 DDX11L8A8MPP1 907 aa15.48■□□□□ 0.07
HDAC4-208ENST00000463007 RRS1Q15050 365 aaKnown RBP15.48■□□□□ 0.07
HDAC4-208ENST00000463007 IFT57Q9NWB7 429 aa15.48■□□□□ 0.07
HDAC4-208ENST00000463007 KIF16BQ96L93 1317 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 172.6 ms