RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NPATQ14207 1427 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 C8orf37Q96NL8 207 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 KDM4FA0A1W2PPD8 638 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 CADPS2Q86UW7 1296 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 ABCC1P33527 1531 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 ANO2Q9NQ90 1003 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 NAP1L2Q9ULW6 460 aaPredicted RBP14.32□□□□□ -0.12
NPHP4-204ENST00000460696 KDM2BQ8NHM5 1336 aa14.32□□□□□ -0.12
NPHP4-204ENST00000460696 REC8O95072 547 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 ZFYVE16Q7Z3T8 1539 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 CHRNA2Q15822 529 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 INTS3Q68E01 1043 aaKnown RBP14.31□□□□□ -0.12
NPHP4-204ENST00000460696 ZNF428Q96B54 188 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 PHACTR3Q96KR7 559 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 ALDH1L2Q3SY69 923 aa14.31□□□□□ -0.12
NPHP4-204ENST00000460696 C1orf141Q5JVX7 400 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 MBIPQ9NS73 344 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 GAS2L2Q8NHY3 880 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 CHMP4AQ9BY43 222 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 TBC1D2Q9BYX2 928 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 IFT57Q9NWB7 429 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 CDC42BPBQ9Y5S2 1711 aa14.3□□□□□ -0.12
NPHP4-204ENST00000460696 PHF8Q9UPP1 1060 aa14.29□□□□□ -0.12
NPHP4-204ENST00000460696 CROCC2H7BZ55 1655 aa14.29□□□□□ -0.12
NPHP4-204ENST00000460696 PRDM15P57071 1507 aaPredicted RBP14.29□□□□□ -0.12
NPHP4-204ENST00000460696 C9orf78Q9NZ63 289 aaPredicted RBP14.29□□□□□ -0.12
NPHP4-204ENST00000460696 ERVK-7P63135 1459 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 TOM1L2Q6ZVM7 507 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 MSH6P52701 1360 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 TSPYL6Q8N831 410 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 PUS7Q96PZ0 661 aaKnown RBP14.28□□□□□ -0.12
NPHP4-204ENST00000460696 CHMP3Q9Y3E7 222 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 TRAK2O60296 914 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 ORAI2Q96SN7 254 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 ZNF521Q96K83 1311 aa14.28□□□□□ -0.12
NPHP4-204ENST00000460696 HSP90AB2PQ58FF8 381 aa14.27□□□□□ -0.12
NPHP4-204ENST00000460696 AEBP1Q8IUX7 1158 aa14.27□□□□□ -0.12
NPHP4-204ENST00000460696 INSRP06213 1382 aa14.27□□□□□ -0.12
NPHP4-204ENST00000460696 DDX54Q8TDD1 881 aaKnown RBP14.27□□□□□ -0.12
NPHP4-204ENST00000460696 F6X3S4 739 aa14.27□□□□□ -0.13
NPHP4-204ENST00000460696 UBTFL1P0CB47 393 aaPredicted RBP14.27□□□□□ -0.13
NPHP4-204ENST00000460696 PTMSP20962 102 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 CCDC30Q5VVM6 783 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 TRPM2O94759 1503 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 SMARCA5O60264 1052 aaPredicted RBP14.26□□□□□ -0.13
NPHP4-204ENST00000460696 DNTTIP2Q5QJE6 756 aaKnown RBP14.26□□□□□ -0.13
NPHP4-204ENST00000460696 RIMS2Q9UQ26 1411 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 KRT28Q7Z3Y7 464 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 IL16Q14005 1332 aa14.26□□□□□ -0.13
NPHP4-204ENST00000460696 TRPM1Q7Z4N2 1603 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 HDGFL1Q5TGJ6 251 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 C8orf58Q8NAV2 365 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 ACEP12821 1306 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 YTHDC2Q9H6S0 1430 aaKnown RBP14.25□□□□□ -0.13
NPHP4-204ENST00000460696 SURF6O75683 361 aaKnown RBP14.25□□□□□ -0.13
NPHP4-204ENST00000460696 TRIM35Q9UPQ4 493 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 AIMP1Q12904 312 aaKnown RBP14.25□□□□□ -0.13
NPHP4-204ENST00000460696 TBC1D32Q96NH3 1257 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 EXOC6BQ9Y2D4 811 aa14.25□□□□□ -0.13
NPHP4-204ENST00000460696 GNAI2P04899 355 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 GNAI3P08754 354 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 KRT24Q2M2I5 525 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 GOLGA6L4A6NEF3 574 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 TRMT2AQ8IZ69 625 aaKnown RBP14.24□□□□□ -0.13
NPHP4-204ENST00000460696 C19orf44Q9H6X5 657 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 IQGAP3Q86VI3 1631 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 KAT6BQ8WYB5 2073 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 MSNP26038 577 aaKnown RBP14.24□□□□□ -0.13
NPHP4-204ENST00000460696 GPATCH3Q96I76 525 aa14.24□□□□□ -0.13
NPHP4-204ENST00000460696 MCM4P33991 863 aa14.23□□□□□ -0.13
NPHP4-204ENST00000460696 USHBP1Q8N6Y0 703 aa14.23□□□□□ -0.13
NPHP4-204ENST00000460696 MCTP1Q6DN14 999 aa14.23□□□□□ -0.13
NPHP4-204ENST00000460696 PPP1R1BQ9UD71 204 aaPredicted RBP14.23□□□□□ -0.13
NPHP4-204ENST00000460696 HDAC1Q13547 482 aaPredicted RBP14.23□□□□□ -0.13
NPHP4-204ENST00000460696 PPIP5K1Q6PFW1 1433 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 NEK4P51957 841 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 HDAC5Q9UQL6 1122 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 SBNO2Q9Y2G9 1366 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 VAMP4O75379 141 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 PLXNC1O60486 1568 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 SKOR2Q2VWA4 1001 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-204ENST00000460696 RPAP2Q8IXW5 612 aaPredicted RBP14.22□□□□□ -0.13
NPHP4-204ENST00000460696 DIAPH3Q9NSV4 1193 aa14.22□□□□□ -0.13
NPHP4-204ENST00000460696 KDM5AP29375 1690 aaKnown RBP14.21□□□□□ -0.13
NPHP4-204ENST00000460696 CCT4P50991 539 aaKnown RBP14.21□□□□□ -0.13
NPHP4-204ENST00000460696 RAPGEF4Q8WZA2 1011 aa14.21□□□□□ -0.13
NPHP4-204ENST00000460696 RSPH6AQ9H0K4 717 aa14.21□□□□□ -0.13
NPHP4-204ENST00000460696 IL1RAPL2Q9NP60 686 aa14.21□□□□□ -0.13
NPHP4-204ENST00000460696 ZBTB40Q9NUA8 1239 aa14.2□□□□□ -0.14
NPHP4-204ENST00000460696 SLAIN2Q9P270 581 aa14.2□□□□□ -0.14
NPHP4-204ENST00000460696 UNC13BO14795 1591 aa14.2□□□□□ -0.14
NPHP4-204ENST00000460696 TTC21BQ7Z4L5 1316 aa14.2□□□□□ -0.14
NPHP4-204ENST00000460696 K7ELQ4 463 aaPredicted RBP14.2□□□□□ -0.14
NPHP4-204ENST00000460696 SF3B2Q13435 895 aaKnown RBP14.2□□□□□ -0.14
NPHP4-204ENST00000460696 IFIT2P09913 472 aaKnown RBP14.19□□□□□ -0.14
NPHP4-204ENST00000460696 EIF4A2Q14240 407 aaKnown RBP14.19□□□□□ -0.14
NPHP4-204ENST00000460696 MRPL50Q8N5N7 158 aaKnown RBP14.19□□□□□ -0.14
NPHP4-204ENST00000460696 NUCB2P80303 420 aa14.19□□□□□ -0.14
NPHP4-204ENST00000460696 NUCB1Q02818 461 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms