RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CCDC27Q2M243 656 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 FAM13BQ9NYF5 915 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 DRC7Q8IY82 874 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 NKTRP30414 1462 aaKnown RBP7.64□□□□□ -1.19
VPS13D-202ENST00000460333 KIF13AQ9H1H9 1805 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 LTKP29376 864 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 GNAI1P63096 354 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 ZNF771Q7L3S4 317 aaPredicted RBP7.64□□□□□ -1.19
VPS13D-202ENST00000460333 SMC4Q9NTJ3 1288 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 NLRP6P59044 892 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 ARID3AQ99856 593 aa7.64□□□□□ -1.19
VPS13D-202ENST00000460333 SIGLEC1Q9BZZ2 1709 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 PRKAR2BP31323 418 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 EVA1CP58658 441 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 TAF3Q5VWG9 929 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 NME9Q86XW9 330 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 PIK3R4Q99570 1358 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 PTPRMP28827 1452 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 ACEP12821 1306 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 DUSP27Q5VZP5 1158 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 CRBNQ96SW2 442 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 GOLGA6L4A6NEF3 574 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 TMPOP42166 694 aaKnown RBP7.63□□□□□ -1.19
VPS13D-202ENST00000460333 PDE3AQ14432 1141 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 ZKSCAN2Q63HK3 967 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 PLIN1O60240 522 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 SLC4A3P48751 1232 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 TULP4Q9NRJ4 1543 aa7.63□□□□□ -1.19
VPS13D-202ENST00000460333 TTC21BQ7Z4L5 1316 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 PLEKHH1Q9ULM0 1364 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 PLEKHG3A1L390 1219 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 MFAP1P55081 439 aaKnown RBP7.62□□□□□ -1.19
VPS13D-202ENST00000460333 ABTB2Q8N961 1025 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 PIP4K2BP78356 416 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 CCDC173Q0VFZ6 552 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 ZNF428Q96B54 188 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 IL16Q14005 1332 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 A0A0U1RQG5 324 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-202ENST00000460333 CCDC66A2RUB6 948 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 HMOX1P09601 288 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 BACH2Q9BYV9 841 aa7.62□□□□□ -1.19
VPS13D-202ENST00000460333 DDX49Q9Y6V7 483 aaKnown RBP7.62□□□□□ -1.19
VPS13D-202ENST00000460333 MED14O60244 1454 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 RNF123Q5XPI4 1314 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 KIF16BQ96L93 1317 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 HTATSF1O43719 755 aaKnown RBP7.61□□□□□ -1.19
VPS13D-202ENST00000460333 NFE2L2Q16236 605 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 ESCO1Q5FWF5 840 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 ARHGEF28Q8N1W1 1705 aaKnown RBP7.61□□□□□ -1.19
VPS13D-202ENST00000460333 CCDC39Q9UFE4 941 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 PHF8Q9UPP1 1060 aa7.61□□□□□ -1.19
VPS13D-202ENST00000460333 POLKQ9UBT6 870 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 GOLGA6L1Q8N7Z2 621 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 GAS2L2Q8NHY3 880 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 TMX4Q9H1E5 349 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-202ENST00000460333 HMGN5P82970 282 aaKnown RBP7.6□□□□□ -1.19
VPS13D-202ENST00000460333 RRS1Q15050 365 aaKnown RBP7.6□□□□□ -1.19
VPS13D-202ENST00000460333 KCNH5Q8NCM2 988 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 EMILIN1Q9Y6C2 1016 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 TECPR2O15040 1411 aa7.6□□□□□ -1.19
VPS13D-202ENST00000460333 PDCL3Q9H2J4 239 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 DIAPH3Q9NSV4 1193 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 ROBO2Q9HCK4 1378 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 AATKQ6ZMQ8 1374 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 KCNA6P17658 529 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 TEX35Q5T0J7 233 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 ITPRIPQ8IWB1 547 aa7.59□□□□□ -1.19
VPS13D-202ENST00000460333 DZIP1LQ8IYY4 767 aaKnown RBP7.59□□□□□ -1.19
VPS13D-202ENST00000460333 ST18O60284 1047 aa7.59□□□□□ -1.2
VPS13D-202ENST00000460333 SULT6B1Q6IMI4 303 aa7.59□□□□□ -1.2
VPS13D-202ENST00000460333 DDX19BQ9UMR2 479 aa7.59□□□□□ -1.2
VPS13D-202ENST00000460333 USP32Q8NFA0 1604 aa7.58□□□□□ -1.2
VPS13D-202ENST00000460333 TPM3P06753 285 aa7.58□□□□□ -1.2
VPS13D-202ENST00000460333 MYO5BQ9ULV0 1848 aa7.58□□□□□ -1.2
VPS13D-202ENST00000460333 TOM1O60784 492 aa7.58□□□□□ -1.2
VPS13D-202ENST00000460333 SETQ01105 290 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-202ENST00000460333 EXOSC9Q06265 439 aaKnown RBP7.58□□□□□ -1.2
VPS13D-202ENST00000460333 FER1L4A9Z1Z3 1794 aa7.58□□□□□ -1.2
VPS13D-202ENST00000460333 FRAT2O75474 233 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-202ENST00000460333 NASPP49321 788 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-202ENST00000460333 LTV1Q96GA3 475 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-202ENST00000460333 STK31Q9BXU1 1019 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 API5Q9BZZ5 524 aaKnown RBP7.57□□□□□ -1.2
VPS13D-202ENST00000460333 R3HCC1Q9Y3T6 440 aaKnown RBP7.57□□□□□ -1.2
VPS13D-202ENST00000460333 TRAK2O60296 914 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 IFT57Q9NWB7 429 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 DIP2AQ14689 1571 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 MYOM1P52179 1685 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 COG6Q9Y2V7 657 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 PTCH1Q13635 1447 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 ADAMTS13Q76LX8 1427 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 ESPNB1AK53 854 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 TPM4P67936 248 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 CLUAP1Q96AJ1 413 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 ANKARQ7Z5J8 1434 aa7.57□□□□□ -1.2
VPS13D-202ENST00000460333 BCAR3O75815 825 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 NUCB2P80303 420 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 BCL2L13Q9BXK5 485 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 ZMYND15Q9H091 742 aa7.56□□□□□ -1.2
VPS13D-202ENST00000460333 ZNF521Q96K83 1311 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms