RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 CCDC39Q9UFE4 941 aa17.74■□□□□ 0.43
PTPRU-205ENST00000460170 SRGAP3O43295 1099 aa17.73■□□□□ 0.43
PTPRU-205ENST00000460170 PES1O00541 588 aaKnown RBP17.73■□□□□ 0.43
PTPRU-205ENST00000460170 DNAJC2Q99543 621 aaKnown RBP17.73■□□□□ 0.43
PTPRU-205ENST00000460170 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.73■□□□□ 0.43
PTPRU-205ENST00000460170 MARCH6O60337 910 aa17.73■□□□□ 0.43
PTPRU-205ENST00000460170 LETM1O95202 739 aaPredicted RBP17.73■□□□□ 0.43
PTPRU-205ENST00000460170 PLCH2O75038 1416 aa17.73■□□□□ 0.43
PTPRU-205ENST00000460170 FBXO31Q5XUX0 539 aaPredicted RBP17.73■□□□□ 0.43
PTPRU-205ENST00000460170 ZNF592Q92610 1267 aa17.72■□□□□ 0.43
PTPRU-205ENST00000460170 VPS37DQ86XT2 251 aa17.72■□□□□ 0.43
PTPRU-205ENST00000460170 CYP46A1Q9Y6A2 500 aa17.72■□□□□ 0.43
PTPRU-205ENST00000460170 GNAT3A8MTJ3 354 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 WASLO00401 505 aaPredicted RBP17.71■□□□□ 0.43
PTPRU-205ENST00000460170 TPM1P09493 284 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 MIS18AQ9NYP9 233 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 HOOK1Q9UJC3 728 aaKnown RBP17.71■□□□□ 0.43
PTPRU-205ENST00000460170 ERICH2A1L162 156 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 WDR62O43379 1518 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 DUOX2Q9NRD8 1548 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 FIBPO43427 364 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 KDM5BQ9UGL1 1544 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 TESK2Q96S53 571 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 IL1RAPL2Q9NP60 686 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 FAM13BQ9NYF5 915 aa17.71■□□□□ 0.43
PTPRU-205ENST00000460170 CCDC173Q0VFZ6 552 aa17.7■□□□□ 0.42
PTPRU-205ENST00000460170 TSR1Q2NL82 804 aaKnown RBP17.7■□□□□ 0.42
PTPRU-205ENST00000460170 TSPY26PQ9H489 355 aa17.7■□□□□ 0.42
PTPRU-205ENST00000460170 EXOC6BQ9Y2D4 811 aa17.7■□□□□ 0.42
PTPRU-205ENST00000460170 WDR33Q9C0J8 1336 aaKnown RBP17.7■□□□□ 0.42
PTPRU-205ENST00000460170 SAFBQ15424 915 aaKnown RBP eCLIP17.7■□□□□ 0.42
PTPRU-205ENST00000460170 IGHDP01880 384 aa17.69■□□□□ 0.42
PTPRU-205ENST00000460170 GRPEL1Q9HAV7 217 aa17.69■□□□□ 0.42
PTPRU-205ENST00000460170 AMOTL1Q8IY63 956 aa17.69■□□□□ 0.42
PTPRU-205ENST00000460170 ASXL1Q8IXJ9 1541 aa17.69■□□□□ 0.42
PTPRU-205ENST00000460170 MAP4K4O95819 1239 aaPredicted RBP17.69■□□□□ 0.42
PTPRU-205ENST00000460170 ANKLE2Q86XL3 938 aa17.69■□□□□ 0.42
PTPRU-205ENST00000460170 NOL10Q9BSC4 688 aaKnown RBP17.69■□□□□ 0.42
PTPRU-205ENST00000460170 SDF4Q9BRK5 362 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 SYCP2Q9BX26 1530 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 SIL1Q9H173 461 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 KIAA0556O60303 1618 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 BTBD11A6QL63 1104 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 FBXW7Q969H0 707 aa17.68■□□□□ 0.42
PTPRU-205ENST00000460170 IL16Q14005 1332 aa17.67■□□□□ 0.42
PTPRU-205ENST00000460170 DENND4BO75064 1496 aaPredicted RBP17.67■□□□□ 0.42
PTPRU-205ENST00000460170 ANKRD36BQ8N2N9 1353 aa17.67■□□□□ 0.42
PTPRU-205ENST00000460170 TBC1D2Q9BYX2 928 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 ADAMTS12P58397 1594 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 POGZQ7Z3K3 1410 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 ANKRD1Q15327 319 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 AEBP1Q8IUX7 1158 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 GOLGA6L1Q8N7Z2 621 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 SPG7Q9UQ90 795 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 R3HCC1Q9Y3T6 440 aaKnown RBP17.66■□□□□ 0.42
PTPRU-205ENST00000460170 AACSQ86V21 672 aa17.66■□□□□ 0.42
PTPRU-205ENST00000460170 CCAR2Q8N163 923 aaKnown RBP17.65■□□□□ 0.42
PTPRU-205ENST00000460170 HOMER1Q86YM7 354 aa17.65■□□□□ 0.42
PTPRU-205ENST00000460170 NAT10Q9H0A0 1025 aaKnown RBP17.65■□□□□ 0.42
PTPRU-205ENST00000460170 CABP4P57796 275 aa17.65■□□□□ 0.42
PTPRU-205ENST00000460170 TBC1D2BQ9UPU7 963 aa17.65■□□□□ 0.42
PTPRU-205ENST00000460170 SMARCA5O60264 1052 aaPredicted RBP17.64■□□□□ 0.42
PTPRU-205ENST00000460170 MYL6BP14649 208 aa17.64■□□□□ 0.42
PTPRU-205ENST00000460170 ANKRD20A12PQ8NF67 263 aa17.64■□□□□ 0.42
PTPRU-205ENST00000460170 ARHGEF12Q9NZN5 1544 aa17.64■□□□□ 0.41
PTPRU-205ENST00000460170 MX1P20591 662 aa17.64■□□□□ 0.41
PTPRU-205ENST00000460170 NOC3LQ8WTT2 800 aaKnown RBP17.64■□□□□ 0.41
PTPRU-205ENST00000460170 TPM2P07951 284 aa17.64■□□□□ 0.41
PTPRU-205ENST00000460170 CWC27Q6UX04 472 aaKnown RBP17.64■□□□□ 0.41
PTPRU-205ENST00000460170 KINO60870 393 aaKnown RBP17.63■□□□□ 0.41
PTPRU-205ENST00000460170 KCNH5Q8NCM2 988 aa17.63■□□□□ 0.41
PTPRU-205ENST00000460170 SHANK2Q9UPX8 1470 aa17.63■□□□□ 0.41
PTPRU-205ENST00000460170 TAF7Q15545 349 aaPredicted RBP17.63■□□□□ 0.41
PTPRU-205ENST00000460170 KIF1BPQ96EK5 621 aa17.63■□□□□ 0.41
PTPRU-205ENST00000460170 PZPP20742 1482 aa17.63■□□□□ 0.41
PTPRU-205ENST00000460170 TRIM5Q9C035 493 aa17.63■□□□□ 0.41
PTPRU-205ENST00000460170 PER1O15534 1290 aaPredicted RBP17.62■□□□□ 0.41
PTPRU-205ENST00000460170 DHX16O60231 1041 aaKnown RBP17.62■□□□□ 0.41
PTPRU-205ENST00000460170 VPS53Q5VIR6 699 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 KIF6Q6ZMV9 814 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 BLOC1S2Q6QNY1 142 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 CCDC158Q5M9N0 1113 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 NUTM1Q86Y26 1132 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 PPP6R1Q9UPN7 881 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 BMP2KLQ5H9B9 411 aa17.62■□□□□ 0.41
PTPRU-205ENST00000460170 CCDC47Q96A33 483 aaKnown RBP17.62■□□□□ 0.41
PTPRU-205ENST00000460170 F6X3S4 739 aa17.61■□□□□ 0.41
PTPRU-205ENST00000460170 LARP1BQ659C4 914 aaKnown RBP17.61■□□□□ 0.41
PTPRU-205ENST00000460170 KRT85P78386 507 aa17.61■□□□□ 0.41
PTPRU-205ENST00000460170 ZSCAN31Q96LW9 406 aaPredicted RBP17.61■□□□□ 0.41
PTPRU-205ENST00000460170 RBM42Q9BTD8 480 aaKnown RBP17.61■□□□□ 0.41
PTPRU-205ENST00000460170 FYB1O15117 783 aa17.61■□□□□ 0.41
PTPRU-205ENST00000460170 JAKMIP1Q96N16 626 aaKnown RBP17.61■□□□□ 0.41
PTPRU-205ENST00000460170 POLR3AO14802 1390 aaPredicted RBP17.61■□□□□ 0.41
PTPRU-205ENST00000460170 RAB11FIP3O75154 756 aa17.61■□□□□ 0.41
PTPRU-205ENST00000460170 PDRG1Q9NUG6 133 aa17.61■□□□□ 0.41
PTPRU-205ENST00000460170 TRAPPC8Q9Y2L5 1435 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 VSIG10Q8N0Z9 540 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 MBIPQ9NS73 344 aa17.6■□□□□ 0.41
PTPRU-205ENST00000460170 PCDHB15Q9Y5E8 787 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms