RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 TRIM27P14373 513 aa10.7□□□□□ -0.7
VPS50-208ENST00000458707 ISY1Q9ULR0 285 aaKnown RBP10.7□□□□□ -0.7
VPS50-208ENST00000458707 ABCC3O15438 1527 aa10.7□□□□□ -0.7
VPS50-208ENST00000458707 EVC2Q86UK5 1308 aa10.7□□□□□ -0.7
VPS50-208ENST00000458707 RBM25P49756 843 aaKnown RBP10.7□□□□□ -0.7
VPS50-208ENST00000458707 PROM2Q8N271 834 aa10.7□□□□□ -0.7
VPS50-208ENST00000458707 REREQ9P2R6 1566 aa10.7□□□□□ -0.7
VPS50-208ENST00000458707 TRAK2O60296 914 aa10.69□□□□□ -0.7
VPS50-208ENST00000458707 U2AF1L5P0DN76 240 aaPredicted RBP10.69□□□□□ -0.7
VPS50-208ENST00000458707 U2AF1Q01081 240 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS50-208ENST00000458707 ATF7IPQ6VMQ6 1270 aa10.69□□□□□ -0.7
VPS50-208ENST00000458707 SNX21Q969T3 373 aa10.69□□□□□ -0.7
VPS50-208ENST00000458707 DLG5Q8TDM6 1919 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 A0A0U1RQG5 324 aaPredicted RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 DDX11L8A8MPP1 907 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 CLCN1P35523 988 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 TMPOP42166 694 aaKnown RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 MRE11P49959 708 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 MFAP1P55081 439 aaKnown RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 EXOSC9Q06265 439 aaKnown RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 ASTLQ6HA08 431 aaPredicted RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 SSH1Q8WYL5 1049 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 SMC4Q9NTJ3 1288 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 TRIM35Q9UPQ4 493 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 MLH3Q9UHC1 1453 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 MAP2P11137 1827 aaKnown RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 SPATA31D1Q6ZQQ2 1576 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 HSCBQ8IWL3 235 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 TSR2Q969E8 191 aaKnown RBP10.68□□□□□ -0.7
VPS50-208ENST00000458707 ZBTB40Q9NUA8 1239 aa10.68□□□□□ -0.7
VPS50-208ENST00000458707 AK9Q5TCS8 1911 aa10.67□□□□□ -0.7
VPS50-208ENST00000458707 CERKQ8TCT0 537 aa10.67□□□□□ -0.7
VPS50-208ENST00000458707 KIF16BQ96L93 1317 aa10.67□□□□□ -0.7
VPS50-208ENST00000458707 PPIP5K1Q6PFW1 1433 aa10.67□□□□□ -0.7
VPS50-208ENST00000458707 A0A1W2PP64 1363 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 NUCB1Q02818 461 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 TMEM132EQ6IEE7 984 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 CIZ1Q9ULV3 898 aaPredicted RBP10.66□□□□□ -0.7
VPS50-208ENST00000458707 ZFYVE9O95405 1425 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 BRPF1P55201 1214 aaPredicted RBP10.66□□□□□ -0.7
VPS50-208ENST00000458707 ITPRIPQ8IWB1 547 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 SPRYD3Q8NCJ5 442 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 PANK2Q9BZ23 570 aa10.66□□□□□ -0.7
VPS50-208ENST00000458707 CD163L1Q9NR16 1453 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 PNPLA6Q8IY17 1366 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 RRP9O43818 475 aaKnown RBP10.65□□□□□ -0.7
VPS50-208ENST00000458707 ALDH1L2Q3SY69 923 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 TMEM57Q8N5G2 664 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 NOB1Q9ULX3 412 aaKnown RBP10.65□□□□□ -0.7
VPS50-208ENST00000458707 LRRC7Q96NW7 1537 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 ASXL2Q76L83 1435 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 POGZQ7Z3K3 1410 aa10.65□□□□□ -0.7
VPS50-208ENST00000458707 IPO8O15397 1037 aaKnown RBP10.64□□□□□ -0.71
VPS50-208ENST00000458707 CHGAP10645 457 aaKnown RBP10.64□□□□□ -0.71
VPS50-208ENST00000458707 MS4A3Q96HJ5 214 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 PTPRMP28827 1452 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 BMP2KLQ5H9B9 411 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 SLC39A7Q92504 469 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 ZNF428Q96B54 188 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 GRPEL1Q9HAV7 217 aa10.64□□□□□ -0.71
VPS50-208ENST00000458707 PIK3R4Q99570 1358 aa10.63□□□□□ -0.71
VPS50-208ENST00000458707 VGFO15240 615 aaPredicted RBP10.63□□□□□ -0.71
VPS50-208ENST00000458707 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
VPS50-208ENST00000458707 C7P10643 843 aa10.63□□□□□ -0.71
VPS50-208ENST00000458707 PTMSP20962 102 aa10.63□□□□□ -0.71
VPS50-208ENST00000458707 GZF1Q9H116 711 aaPredicted RBP10.63□□□□□ -0.71
VPS50-208ENST00000458707 PTCH1Q13635 1447 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 TMEM131LA2VDJ0 1609 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 RAB3GAP1Q15042 981 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 CHD1LQ86WJ1 897 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 PNNQ9H307 717 aaKnown RBP10.62□□□□□ -0.71
VPS50-208ENST00000458707 PREX1Q8TCU6 1659 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 ATAD2Q6PL18 1390 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 ARHGAP31Q2M1Z3 1444 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 FAM135BQ49AJ0 1406 aa10.62□□□□□ -0.71
VPS50-208ENST00000458707 SKOR2Q2VWA4 1001 aaPredicted RBP10.61□□□□□ -0.71
VPS50-208ENST00000458707 HOMEZQ8IX15 550 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 TNPO1Q92973 898 aaKnown RBP10.61□□□□□ -0.71
VPS50-208ENST00000458707 KIF2CQ99661 725 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 CABP2Q9NPB3 220 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 PLSCR2Q9NRY7 297 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 KNDC1Q76NI1 1749 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 U2SURPO15042 1029 aaKnown RBP10.61□□□□□ -0.71
VPS50-208ENST00000458707 RIPK4P57078 832 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 GBP4Q96PP9 640 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 METRNQ9UJH8 293 aa10.61□□□□□ -0.71
VPS50-208ENST00000458707 CLEC17AQ6ZS10 378 aa10.6□□□□□ -0.71
VPS50-208ENST00000458707 GCC1Q96CN9 775 aa10.6□□□□□ -0.71
VPS50-208ENST00000458707 CHMP4BQ9H444 224 aaKnown RBP10.6□□□□□ -0.71
VPS50-208ENST00000458707 DIP2BQ9P265 1576 aa10.6□□□□□ -0.71
VPS50-208ENST00000458707 DIP2CQ9Y2E4 1556 aa10.6□□□□□ -0.71
VPS50-208ENST00000458707 FYB1O15117 783 aa10.59□□□□□ -0.71
VPS50-208ENST00000458707 ARHGAP45Q92619 1136 aa10.59□□□□□ -0.71
VPS50-208ENST00000458707 DIAPH1O60610 1272 aaKnown RBP10.59□□□□□ -0.71
VPS50-208ENST00000458707 LNPKQ9C0E8 428 aa10.59□□□□□ -0.71
VPS50-208ENST00000458707 GGNBP2Q9H3C7 697 aa10.59□□□□□ -0.71
VPS50-208ENST00000458707 TERF2IPQ9NYB0 399 aa10.59□□□□□ -0.71
VPS50-208ENST00000458707 IBTKQ9P2D0 1353 aaPredicted RBP10.59□□□□□ -0.71
VPS50-208ENST00000458707 ESPNB1AK53 854 aa10.58□□□□□ -0.72
VPS50-208ENST00000458707 ZBTB7BO15156 539 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms