RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 KIF13AQ9H1H9 1805 aa13.9□□□□□ -0.18
RFX3-211ENST00000458034 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.19
RFX3-211ENST00000458034 WASLO00401 505 aaPredicted RBP13.89□□□□□ -0.19
RFX3-211ENST00000458034 PITPNM1O00562 1244 aa13.89□□□□□ -0.19
RFX3-211ENST00000458034 LMOD3Q0VAK6 560 aa13.89□□□□□ -0.19
RFX3-211ENST00000458034 HDAC1Q13547 482 aaPredicted RBP13.89□□□□□ -0.19
RFX3-211ENST00000458034 C3P01024 1663 aa13.88□□□□□ -0.19
RFX3-211ENST00000458034 SSH1Q8WYL5 1049 aa13.88□□□□□ -0.19
RFX3-211ENST00000458034 RSPH6AQ9H0K4 717 aa13.88□□□□□ -0.19
RFX3-211ENST00000458034 TNNQ9UQP3 1299 aa13.88□□□□□ -0.19
RFX3-211ENST00000458034 UBR1Q8IWV7 1749 aa13.87□□□□□ -0.19
RFX3-211ENST00000458034 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.19
RFX3-211ENST00000458034 NFE2L2Q16236 605 aa13.87□□□□□ -0.19
RFX3-211ENST00000458034 ITPRIPQ8IWB1 547 aa13.87□□□□□ -0.19
RFX3-211ENST00000458034 POLKQ9UBT6 870 aa13.87□□□□□ -0.19
RFX3-211ENST00000458034 DLG5Q8TDM6 1919 aa13.86□□□□□ -0.19
RFX3-211ENST00000458034 TRIM27P14373 513 aa13.86□□□□□ -0.19
RFX3-211ENST00000458034 PRKAR2BP31323 418 aa13.86□□□□□ -0.19
RFX3-211ENST00000458034 BRPF1P55201 1214 aaPredicted RBP13.86□□□□□ -0.19
RFX3-211ENST00000458034 WAPLQ7Z5K2 1190 aa13.86□□□□□ -0.19
RFX3-211ENST00000458034 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.86□□□□□ -0.19
RFX3-211ENST00000458034 NRKQ7Z2Y5 1582 aa13.86□□□□□ -0.19
RFX3-211ENST00000458034 TNRQ92752 1358 aa13.85□□□□□ -0.19
RFX3-211ENST00000458034 GNAI1P63096 354 aa13.85□□□□□ -0.19
RFX3-211ENST00000458034 NFKBIBQ15653 356 aa13.85□□□□□ -0.19
RFX3-211ENST00000458034 ZNF692Q9BU19 519 aaPredicted RBP13.85□□□□□ -0.19
RFX3-211ENST00000458034 NOB1Q9ULX3 412 aaKnown RBP13.85□□□□□ -0.19
RFX3-211ENST00000458034 USP19O94966 1318 aa13.85□□□□□ -0.19
RFX3-211ENST00000458034 MLECQ14165 292 aa13.84□□□□□ -0.19
RFX3-211ENST00000458034 COG3Q96JB2 828 aa13.84□□□□□ -0.19
RFX3-211ENST00000458034 IFT57Q9NWB7 429 aa13.84□□□□□ -0.19
RFX3-211ENST00000458034 TOPAZ1Q8N9V7 1692 aa13.84□□□□□ -0.19
RFX3-211ENST00000458034 SLC4A3P48751 1232 aa13.83□□□□□ -0.2
RFX3-211ENST00000458034 NUDT16Q96DE0 195 aaKnown RBP13.83□□□□□ -0.2
RFX3-211ENST00000458034 CCDC61Q9Y6R9 512 aa13.83□□□□□ -0.2
RFX3-211ENST00000458034 PTCH1Q13635 1447 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 IL13P35225 146 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 SMC5Q8IY18 1101 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 TMEM57Q8N5G2 664 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 ARHGAP45Q92619 1136 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 METP08581 1390 aa13.82□□□□□ -0.2
RFX3-211ENST00000458034 HAP1P54257 671 aaPredicted RBP13.81□□□□□ -0.2
RFX3-211ENST00000458034 TBC1D32Q96NH3 1257 aa13.81□□□□□ -0.2
RFX3-211ENST00000458034 ZBTB40Q9NUA8 1239 aa13.8□□□□□ -0.2
RFX3-211ENST00000458034 PIK3R4Q99570 1358 aa13.8□□□□□ -0.2
RFX3-211ENST00000458034 TMEM2Q9UHN6 1383 aa13.8□□□□□ -0.2
RFX3-211ENST00000458034 NALCNQ8IZF0 1738 aa13.79□□□□□ -0.2
RFX3-211ENST00000458034 TXNDC2Q86VQ3 553 aa13.79□□□□□ -0.2
RFX3-211ENST00000458034 NME9Q86XW9 330 aa13.79□□□□□ -0.2
RFX3-211ENST00000458034 EIF5BO60841 1220 aaKnown RBP13.78□□□□□ -0.2
RFX3-211ENST00000458034 SEC24BO95487 1268 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 HMOX1P09601 288 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 GSE1Q14687 1217 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 MRPL50Q8N5N7 158 aaKnown RBP13.78□□□□□ -0.2
RFX3-211ENST00000458034 FOXD4L1Q9NU39 408 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 EMILIN1Q9Y6C2 1016 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 KIF24Q5T7B8 1368 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 PLEKHG1Q9ULL1 1385 aa13.78□□□□□ -0.2
RFX3-211ENST00000458034 RIMS1Q86UR5 1692 aaKnown RBP13.77□□□□□ -0.21
RFX3-211ENST00000458034 GCC1Q96CN9 775 aa13.77□□□□□ -0.21
RFX3-211ENST00000458034 API5Q9BZZ5 524 aaKnown RBP13.77□□□□□ -0.21
RFX3-211ENST00000458034 FMN2Q9NZ56 1722 aa13.77□□□□□ -0.21
RFX3-211ENST00000458034 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.76□□□□□ -0.21
RFX3-211ENST00000458034 VAMP4O75379 141 aa13.76□□□□□ -0.21
RFX3-211ENST00000458034 ZNF853P0CG23 659 aa13.76□□□□□ -0.21
RFX3-211ENST00000458034 EVX2Q03828 476 aa13.76□□□□□ -0.21
RFX3-211ENST00000458034 NUCB1Q02818 461 aa13.75□□□□□ -0.21
RFX3-211ENST00000458034 CFAP44Q96MT7 982 aa13.75□□□□□ -0.21
RFX3-211ENST00000458034 DIP2AQ14689 1571 aa13.75□□□□□ -0.21
RFX3-211ENST00000458034 ADAMTS13Q76LX8 1427 aa13.74□□□□□ -0.21
RFX3-211ENST00000458034 ABCC4O15439 1325 aa13.74□□□□□ -0.21
RFX3-211ENST00000458034 RGPD1P0DJD0 1748 aa13.74□□□□□ -0.21
RFX3-211ENST00000458034 PHACTR3Q96KR7 559 aa13.74□□□□□ -0.21
RFX3-211ENST00000458034 C22orf23Q9BZE7 217 aa13.74□□□□□ -0.21
RFX3-211ENST00000458034 OVOS2A0A0J9YW53 1432 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 OVOS2Q6IE36 1432 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 TTC21BQ7Z4L5 1316 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 PLEKHG3A1L390 1219 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 TWISTNBQ3B726 338 aaPredicted RBP13.73□□□□□ -0.21
RFX3-211ENST00000458034 CHD1LQ86WJ1 897 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 MBIPQ9NS73 344 aa13.73□□□□□ -0.21
RFX3-211ENST00000458034 ROBO2Q9HCK4 1378 aa13.72□□□□□ -0.21
RFX3-211ENST00000458034 USP6P35125 1406 aa13.72□□□□□ -0.21
RFX3-211ENST00000458034 TTC21AQ8NDW8 1320 aa13.71□□□□□ -0.21
RFX3-211ENST00000458034 PRR36Q9H6K5 1346 aa13.71□□□□□ -0.21
RFX3-211ENST00000458034 ZBTB7BO15156 539 aaPredicted RBP13.71□□□□□ -0.21
RFX3-211ENST00000458034 MFAP1P55081 439 aaKnown RBP13.71□□□□□ -0.21
RFX3-211ENST00000458034 RRS1Q15050 365 aaKnown RBP13.71□□□□□ -0.21
RFX3-211ENST00000458034 ZRANB1Q9UGI0 708 aa13.71□□□□□ -0.21
RFX3-211ENST00000458034 EID1Q9Y6B2 187 aa13.71□□□□□ -0.21
RFX3-211ENST00000458034 SLIT1O75093 1534 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 FRAT2O75474 233 aaPredicted RBP13.7□□□□□ -0.22
RFX3-211ENST00000458034 FBLN1P23142 703 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 HSCBQ8IWL3 235 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 THUMPD2Q9BTF0 503 aaKnown RBP13.7□□□□□ -0.22
RFX3-211ENST00000458034 TBC1D2Q9BYX2 928 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 ARHGEF10O15013 1369 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 USP31Q70CQ4 1352 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 KIAA0232Q92628 1395 aa13.7□□□□□ -0.22
RFX3-211ENST00000458034 BMP2KLQ5H9B9 411 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms