RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 FER1L4A9Z1Z3 1794 aa19.23■□□□□ 0.67
LDLR-202ENST00000455727 TTC21BQ7Z4L5 1316 aa19.23■□□□□ 0.67
LDLR-202ENST00000455727 NOB1Q9ULX3 412 aaKnown RBP19.23■□□□□ 0.67
LDLR-202ENST00000455727 CEBPAP49715 358 aaPredicted RBP19.23■□□□□ 0.67
LDLR-202ENST00000455727 LMOD3Q0VAK6 560 aa19.23■□□□□ 0.67
LDLR-202ENST00000455727 NALCNQ8IZF0 1738 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 GNAI1P63096 354 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 IFT57Q9NWB7 429 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 OVOS2A0A0J9YW53 1432 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 OVOS2Q6IE36 1432 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 ACEP12821 1306 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 DIP2AQ14689 1571 aa19.22■□□□□ 0.67
LDLR-202ENST00000455727 USP6P35125 1406 aa19.21■□□□□ 0.67
LDLR-202ENST00000455727 ZNF853P0CG23 659 aa19.21■□□□□ 0.67
LDLR-202ENST00000455727 RRS1Q15050 365 aaKnown RBP19.21■□□□□ 0.67
LDLR-202ENST00000455727 PTCH1Q13635 1447 aa19.21■□□□□ 0.67
LDLR-202ENST00000455727 HDAC1Q13547 482 aaPredicted RBP19.2■□□□□ 0.66
LDLR-202ENST00000455727 SLC26A8Q96RN1 970 aa19.19■□□□□ 0.66
LDLR-202ENST00000455727 PDZRN3Q9UPQ7 1066 aa19.19■□□□□ 0.66
LDLR-202ENST00000455727 SSH2Q76I76 1423 aa19.19■□□□□ 0.66
LDLR-202ENST00000455727 THEMISQ8N1K5 641 aaPredicted RBP19.19■□□□□ 0.66
LDLR-202ENST00000455727 AMOTL2Q9Y2J4 779 aa19.18■□□□□ 0.66
LDLR-202ENST00000455727 USP31Q70CQ4 1352 aa19.18■□□□□ 0.66
LDLR-202ENST00000455727 ITPRIPQ8IWB1 547 aa19.18■□□□□ 0.66
LDLR-202ENST00000455727 VAMP4O75379 141 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 ARHGAP45Q92619 1136 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 NBR1Q14596 966 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 TMEM57Q8N5G2 664 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 CFAP44Q96MT7 982 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 ZBTB40Q9NUA8 1239 aa19.17■□□□□ 0.66
LDLR-202ENST00000455727 LAS1LQ9Y4W2 734 aaKnown RBP19.16■□□□□ 0.66
LDLR-202ENST00000455727 TTC21AQ8NDW8 1320 aa19.16■□□□□ 0.66
LDLR-202ENST00000455727 RIMS1Q86UR5 1692 aaKnown RBP19.15■□□□□ 0.66
LDLR-202ENST00000455727 EIF4A2Q14240 407 aaKnown RBP19.14■□□□□ 0.66
LDLR-202ENST00000455727 BCL11AQ9H165 835 aa19.14■□□□□ 0.66
LDLR-202ENST00000455727 MBIPQ9NS73 344 aa19.14■□□□□ 0.66
LDLR-202ENST00000455727 RGPD1P0DJD0 1748 aa19.14■□□□□ 0.66
LDLR-202ENST00000455727 XRN1Q8IZH2 1706 aaKnown RBP19.14■□□□□ 0.65
LDLR-202ENST00000455727 THUMPD2Q9BTF0 503 aaKnown RBP19.14■□□□□ 0.65
LDLR-202ENST00000455727 MRPL50Q8N5N7 158 aaKnown RBP19.13■□□□□ 0.65
LDLR-202ENST00000455727 PEAK1Q9H792 1746 aa19.13■□□□□ 0.65
LDLR-202ENST00000455727 PIK3R4Q99570 1358 aa19.13■□□□□ 0.65
LDLR-202ENST00000455727 USP19O94966 1318 aa19.13■□□□□ 0.65
LDLR-202ENST00000455727 CHMP4BQ9H444 224 aaKnown RBP19.13■□□□□ 0.65
LDLR-202ENST00000455727 SMC5Q8IY18 1101 aa19.12■□□□□ 0.65
LDLR-202ENST00000455727 USP35Q9P2H5 1018 aa19.12■□□□□ 0.65
LDLR-202ENST00000455727 DAXXQ9UER7 740 aaPredicted RBP19.12■□□□□ 0.65
LDLR-202ENST00000455727 RGPD8O14715 1765 aaPredicted RBP19.11■□□□□ 0.65
LDLR-202ENST00000455727 RTL5Q5HYW3 569 aaPredicted RBP19.11■□□□□ 0.65
LDLR-202ENST00000455727 NUTM2FA1L443 756 aa19.11■□□□□ 0.65
LDLR-202ENST00000455727 TSPYL6Q8N831 410 aa19.1■□□□□ 0.65
LDLR-202ENST00000455727 FMN2Q9NZ56 1722 aa19.1■□□□□ 0.65
LDLR-202ENST00000455727 TWISTNBQ3B726 338 aaPredicted RBP19.09■□□□□ 0.65
LDLR-202ENST00000455727 SULT6B1Q6IMI4 303 aa19.09■□□□□ 0.65
LDLR-202ENST00000455727 ANKARQ7Z5J8 1434 aa19.09■□□□□ 0.65
LDLR-202ENST00000455727 SEC24BO95487 1268 aa19.08■□□□□ 0.64
LDLR-202ENST00000455727 AEBP1Q8IUX7 1158 aa19.07■□□□□ 0.64
LDLR-202ENST00000455727 FAM83GA6ND36 823 aa19.07■□□□□ 0.64
LDLR-202ENST00000455727 ZBTB7BO15156 539 aaPredicted RBP19.07■□□□□ 0.64
LDLR-202ENST00000455727 HSP90AB2PQ58FF8 381 aa19.07■□□□□ 0.64
LDLR-202ENST00000455727 ARHGEF10O15013 1369 aa19.06■□□□□ 0.64
LDLR-202ENST00000455727 HAP1P54257 671 aaPredicted RBP19.06■□□□□ 0.64
LDLR-202ENST00000455727 C8orf58Q8NAV2 365 aa19.06■□□□□ 0.64
LDLR-202ENST00000455727 ABCC4O15439 1325 aa19.06■□□□□ 0.64
LDLR-202ENST00000455727 SBNO1A3KN83 1393 aa19.05■□□□□ 0.64
LDLR-202ENST00000455727 CEP170BQ9Y4F5 1589 aaPredicted RBP19.05■□□□□ 0.64
LDLR-202ENST00000455727 NGDNQ8NEJ9 315 aaKnown RBP19.05■□□□□ 0.64
LDLR-202ENST00000455727 UPF2Q9HAU5 1272 aaKnown RBP19.05■□□□□ 0.64
LDLR-202ENST00000455727 API5Q9BZZ5 524 aaKnown RBP19.05■□□□□ 0.64
LDLR-202ENST00000455727 MAP3K19Q56UN5 1328 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 FLT4P35916 1363 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 PIK3C2AO00443 1686 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 CHL1O00533 1208 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 USP54Q70EL1 1684 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 KIF24Q5T7B8 1368 aa19.04■□□□□ 0.64
LDLR-202ENST00000455727 DCTN1Q14203 1278 aa19.03■□□□□ 0.64
LDLR-202ENST00000455727 KIAA0232Q92628 1395 aa19.03■□□□□ 0.64
LDLR-202ENST00000455727 ELL2O00472 640 aaPredicted RBP19.03■□□□□ 0.64
LDLR-202ENST00000455727 SLC4A3P48751 1232 aa19.03■□□□□ 0.64
LDLR-202ENST00000455727 NUCB1Q02818 461 aa19.03■□□□□ 0.64
LDLR-202ENST00000455727 DEKP35659 375 aaKnown RBP19.02■□□□□ 0.64
LDLR-202ENST00000455727 KDRP35968 1356 aa19.02■□□□□ 0.64
LDLR-202ENST00000455727 PLPPR3Q6T4P5 718 aa19.02■□□□□ 0.64
LDLR-202ENST00000455727 TBC1D32Q96NH3 1257 aa19.01■□□□□ 0.63
LDLR-202ENST00000455727 KCNA6P17658 529 aa19.01■□□□□ 0.63
LDLR-202ENST00000455727 GCC1Q96CN9 775 aa19■□□□□ 0.63
LDLR-202ENST00000455727 CHD2O14647 1828 aaKnown RBP19■□□□□ 0.63
LDLR-202ENST00000455727 CRB1P82279 1406 aa18.99■□□□□ 0.63
LDLR-202ENST00000455727 MARF1Q9Y4F3 1742 aaKnown RBP18.99■□□□□ 0.63
LDLR-202ENST00000455727 BECN1Q14457 450 aa18.99■□□□□ 0.63
LDLR-202ENST00000455727 IGSF1Q8N6C5 1336 aa18.98■□□□□ 0.63
LDLR-202ENST00000455727 CHD1LQ86WJ1 897 aa18.97■□□□□ 0.63
LDLR-202ENST00000455727 MCM10Q7L590 875 aa18.97■□□□□ 0.63
LDLR-202ENST00000455727 ZNF142P52746 1687 aaPredicted RBP18.97■□□□□ 0.63
LDLR-202ENST00000455727 AMPHP49418 695 aa18.96■□□□□ 0.63
LDLR-202ENST00000455727 SOX12O15370 315 aa18.96■□□□□ 0.63
LDLR-202ENST00000455727 INTS3Q68E01 1043 aaKnown RBP18.96■□□□□ 0.63
LDLR-202ENST00000455727 NLRP6P59044 892 aa18.95■□□□□ 0.62
LDLR-202ENST00000455727 EYA1Q99502 592 aa18.95■□□□□ 0.62
LDLR-202ENST00000455727 HTATSF1O43719 755 aaKnown RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms