RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CIZ1Q9ULV3 898 aaPredicted RBP14.59□□□□□ -0.07
MSH6-204ENST00000445503 ZBTB7BO15156 539 aaPredicted RBP14.58□□□□□ -0.08
MSH6-204ENST00000445503 NUCB2P80303 420 aa14.58□□□□□ -0.08
MSH6-204ENST00000445503 RABEP1Q15276 862 aa14.58□□□□□ -0.08
MSH6-204ENST00000445503 NPATQ14207 1427 aa14.58□□□□□ -0.08
MSH6-204ENST00000445503 ZNF518AQ6AHZ1 1483 aa14.58□□□□□ -0.08
MSH6-204ENST00000445503 FKBP5Q13451 457 aaPredicted RBP14.58□□□□□ -0.08
MSH6-204ENST00000445503 PHF23Q9BUL5 403 aaPredicted RBP14.57□□□□□ -0.08
MSH6-204ENST00000445503 IFT57Q9NWB7 429 aa14.57□□□□□ -0.08
MSH6-204ENST00000445503 F6X3S4 739 aa14.57□□□□□ -0.08
MSH6-204ENST00000445503 NGDNQ8NEJ9 315 aaKnown RBP14.57□□□□□ -0.08
MSH6-204ENST00000445503 SBNO2Q9Y2G9 1366 aa14.57□□□□□ -0.08
MSH6-204ENST00000445503 TSHZ3Q63HK5 1081 aa14.57□□□□□ -0.08
MSH6-204ENST00000445503 VSIG10Q8N0Z9 540 aa14.57□□□□□ -0.08
MSH6-204ENST00000445503 NUTM2GQ5VZR2 741 aa14.56□□□□□ -0.08
MSH6-204ENST00000445503 ZNF428Q96B54 188 aa14.56□□□□□ -0.08
MSH6-204ENST00000445503 NUDT16Q96DE0 195 aaKnown RBP14.56□□□□□ -0.08
MSH6-204ENST00000445503 EXOC6BQ9Y2D4 811 aa14.56□□□□□ -0.08
MSH6-204ENST00000445503 LAMC1P11047 1609 aa14.56□□□□□ -0.08
MSH6-204ENST00000445503 MPNDQ8N594 471 aa14.56□□□□□ -0.08
MSH6-204ENST00000445503 AEBP1Q8IUX7 1158 aa14.55□□□□□ -0.08
MSH6-204ENST00000445503 OTUD7AQ8TE49 926 aaPredicted RBP14.55□□□□□ -0.08
MSH6-204ENST00000445503 CD2BP2O95400 341 aaKnown RBP14.55□□□□□ -0.08
MSH6-204ENST00000445503 FAM69CQ0P6D2 419 aa14.55□□□□□ -0.08
MSH6-204ENST00000445503 ZFYVE16Q7Z3T8 1539 aa14.55□□□□□ -0.08
MSH6-204ENST00000445503 HDGFP51858 240 aaKnown RBP14.55□□□□□ -0.08
MSH6-204ENST00000445503 RBM25P49756 843 aaKnown RBP14.54□□□□□ -0.08
MSH6-204ENST00000445503 BAG4O95429 457 aaKnown RBP14.54□□□□□ -0.08
MSH6-204ENST00000445503 LMOD2Q6P5Q4 547 aa14.54□□□□□ -0.08
MSH6-204ENST00000445503 SNX21Q969T3 373 aa14.54□□□□□ -0.08
MSH6-204ENST00000445503 KCNJ4P48050 445 aa14.54□□□□□ -0.08
MSH6-204ENST00000445503 CHD1O14646 1710 aa14.53□□□□□ -0.08
MSH6-204ENST00000445503 EIF2S2P20042 333 aaKnown RBP14.53□□□□□ -0.08
MSH6-204ENST00000445503 MEIS3Q99687 375 aa14.53□□□□□ -0.08
MSH6-204ENST00000445503 ZCCHC11Q5TAX3 1644 aaKnown RBP14.53□□□□□ -0.08
MSH6-204ENST00000445503 RAB3GAP1Q15042 981 aa14.52□□□□□ -0.08
MSH6-204ENST00000445503 MYOM2P54296 1465 aa14.52□□□□□ -0.08
MSH6-204ENST00000445503 CCDC61Q9Y6R9 512 aa14.52□□□□□ -0.08
MSH6-204ENST00000445503 PUS7Q96PZ0 661 aaKnown RBP14.52□□□□□ -0.09
MSH6-204ENST00000445503 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.09
MSH6-204ENST00000445503 KIAA1211Q6ZU35 1233 aa14.52□□□□□ -0.09
MSH6-204ENST00000445503 GAS2L3Q86XJ1 694 aa14.52□□□□□ -0.09
MSH6-204ENST00000445503 RBM27Q9P2N5 1060 aaKnown RBP14.52□□□□□ -0.09
MSH6-204ENST00000445503 MAP4K4O95819 1239 aaPredicted RBP14.51□□□□□ -0.09
MSH6-204ENST00000445503 SDSP20132 328 aa14.51□□□□□ -0.09
MSH6-204ENST00000445503 TTC22Q5TAA0 569 aa14.51□□□□□ -0.09
MSH6-204ENST00000445503 PLEKHM2Q8IWE5 1019 aa14.51□□□□□ -0.09
MSH6-204ENST00000445503 R3HCC1Q9Y3T6 440 aaKnown RBP14.51□□□□□ -0.09
MSH6-204ENST00000445503 ERC2O15083 957 aa14.51□□□□□ -0.09
MSH6-204ENST00000445503 SPHKAPQ2M3C7 1700 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 MAP3K4Q9Y6R4 1608 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 RPAP2Q8IXW5 612 aaPredicted RBP14.5□□□□□ -0.09
MSH6-204ENST00000445503 WASLO00401 505 aaPredicted RBP14.5□□□□□ -0.09
MSH6-204ENST00000445503 CLCN1P35523 988 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 ARHGAP45Q92619 1136 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 UPF3BQ9BZI7 483 aaKnown RBP14.5□□□□□ -0.09
MSH6-204ENST00000445503 CCDC173Q0VFZ6 552 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 IL1RAPL2Q9NP60 686 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 FAM13BQ9NYF5 915 aa14.5□□□□□ -0.09
MSH6-204ENST00000445503 RBM10P98175 930 aaKnown RBP14.49□□□□□ -0.09
MSH6-204ENST00000445503 ZGPATQ8N5A5 531 aaKnown RBP14.49□□□□□ -0.09
MSH6-204ENST00000445503 ISY1Q9ULR0 285 aaKnown RBP14.49□□□□□ -0.09
MSH6-204ENST00000445503 ABCA6Q8N139 1617 aa14.49□□□□□ -0.09
MSH6-204ENST00000445503 IQGAP1P46940 1657 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 TET3O43151 1660 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 HSP90AB2PQ58FF8 381 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 SYCE3A1L190 88 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 FSD2A1L4K1 749 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 SIRT2Q8IXJ6 389 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 CHAMP1Q96JM3 812 aa14.48□□□□□ -0.09
MSH6-204ENST00000445503 GNAI2P04899 355 aa14.47□□□□□ -0.09
MSH6-204ENST00000445503 SLC26A8Q96RN1 970 aa14.47□□□□□ -0.09
MSH6-204ENST00000445503 GSPT1P15170 499 aaKnown RBP14.47□□□□□ -0.09
MSH6-204ENST00000445503 DCTPP1Q9H773 170 aa14.47□□□□□ -0.09
MSH6-204ENST00000445503 CHMP3Q9Y3E7 222 aa14.47□□□□□ -0.09
MSH6-204ENST00000445503 RNF17Q9BXT8 1623 aaKnown RBP14.47□□□□□ -0.09
MSH6-204ENST00000445503 IL13P35225 146 aa14.46□□□□□ -0.09
MSH6-204ENST00000445503 SYAP1Q96A49 352 aaPredicted RBP14.46□□□□□ -0.09
MSH6-204ENST00000445503 LARP6Q9BRS8 491 aaKnown RBP14.46□□□□□ -0.09
MSH6-204ENST00000445503 YTHDC2Q9H6S0 1430 aaKnown RBP14.46□□□□□ -0.09
MSH6-204ENST00000445503 GDPD2Q9HCC8 539 aa14.46□□□□□ -0.09
MSH6-204ENST00000445503 PPIP5K1Q6PFW1 1433 aa14.46□□□□□ -0.09
MSH6-204ENST00000445503 FOXO3O43524 673 aa14.46□□□□□ -0.1
MSH6-204ENST00000445503 SURF6O75683 361 aaKnown RBP14.46□□□□□ -0.1
MSH6-204ENST00000445503 PKP1Q13835 747 aa14.45□□□□□ -0.1
MSH6-204ENST00000445503 ANKRD44Q8N8A2 993 aa14.45□□□□□ -0.1
MSH6-204ENST00000445503 KIF1BO60333 1816 aa14.45□□□□□ -0.1
MSH6-204ENST00000445503 KLHL40Q2TBA0 621 aa14.45□□□□□ -0.1
MSH6-204ENST00000445503 CWC22Q9HCG8 908 aaKnown RBP14.45□□□□□ -0.1
MSH6-204ENST00000445503 LRRCC1Q9C099 1032 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 NLRP6P59044 892 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 CEP85Q6P2H3 762 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 NUTM1Q86Y26 1132 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 TAOK2Q9UL54 1235 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 UBTFL1P0CB47 393 aaPredicted RBP14.44□□□□□ -0.1
MSH6-204ENST00000445503 ZSCAN30Q86W11 494 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 USP26Q9BXU7 913 aa14.44□□□□□ -0.1
MSH6-204ENST00000445503 EIF4A2Q14240 407 aaKnown RBP14.44□□□□□ -0.1
MSH6-204ENST00000445503 ZNF692Q9BU19 519 aaPredicted RBP14.44□□□□□ -0.1
MSH6-204ENST00000445503 A0A0U1RQG5 324 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms